Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8329495.1

Orthogroup ID

OG0000995

Physical Location & Seq

Genomic Coordinates Reverse (-)

363 .. 947

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8329495.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ctgatccaagttcaacatgaggtgggagagactagtttctctgcaggagttcctttctcgacccttataaattataaggaaccaataccttattcaggtacacagagtgctttgagtgaagtgcaacatgatcagggggaatcaagtttctctgcagtaggaaactcattgagtcttataaatagttcgggaccaataccttattctgattcagatggattccttcttcaacgtgatctgggagattcaagttttgctgcagtaggtcatgtctcgagtctcataaatagttcgggaccaataccttattctggcagtatctcccttcgatcagacagcagcgcaaccagcacccgctcatttgccttccctgttatgcatccgcatgaaccatttagcagtccagtgagaatggcaaaagctgaccggaagcttttgggtaaacataggggttggaagcggggtattttctgctgtagtttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

17.23

Weight (kDa)

6.64

Isoelectric Point (pI)

46.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03810 AT2G03810 AT2G03810 AT2G03810 AT2G03810 AT2G03810 AT2G03810
fragaria_vesca	FvH4_4g29290 FvH4_4g29290 FvH4_4g29290 FvH4_5g13400 FvH4_5g13400
malus_domestica	MD06G1205800.v1.1 MD13G1056500.v1.1 MD14G1216700.v1.1 MD16G1055400.v1.1
prunus_persica	Prupe.1G293500_v2.0.a1 Prupe.1G293500_v2.0.a1 Prupe.1G293500_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1
pyrus_communis	pycom06g18360 pycom13g05050 pycom14g17950 pycom16g04830
rosa_chinensis	RchiOBHm_Chr4g0437341 RchiOBHm_Chr7g0183741
rosa_laevigata	RLG00000005027 RLG00000006444
rosa_multiflora	Rmu_co8101974.1_g000001 Rmu_co8329495.1_g000001 Rmu_sc0000893.1_g000016 Rmu_sc0003610.1_g000030 Rmu_sc0004759.1_g000016
rosa_roxburghii	Rroxscaffold_3G00270270 Rroxscaffold_5G00378490
rosa_rugosa	Rorug04G0299600.1 Rorug04G0299700 Rorug04G0299800 Rorug04G0299900 Rorug04G0300000 Rorug04G0300100 Rorug06G0459700 Rorug06G0459800 Rorug06G0459900
rosa_samantha	Rh4AG354900 Rh4BG364800 Rh4CG115500 Rh4CG378900 Rh4DG310700 Rh4DG358600 Rh7AG060600 Rh7BG060700 Rh7CG062300 Rh7DG060700
rosa_wichuraiana	Rw4G031110 Rw7G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	68, 75, 179
AccBSI	CCGCTC	1 cut(s)	357
AciI	CCGC	3 cut(s)	355, 383, 460
AdeI	CACNNNGTG	1 cut(s)	107
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	2 cut(s)	95, 311
AgsI	TTSAA	3 cut(s)	14, 230, 249
AhlI	ACTAGT	1 cut(s)	32
AjuI	GAANNNNNNNTTGG	6 cut(s)	76, 108, 187, 219, 292, 324
AluBI	AGCT	2 cut(s)	422, 433
AluI	AGCT	2 cut(s)	422, 433
Alw26I	GTCTC	3 cut(s)	23, 277, 284
Ama87I	CYCGRG	1 cut(s)	274
ApeKI	GCWGC	2 cut(s)	257, 339
AspLEI	GCGC	1 cut(s)	344
AspS9I	GGNCC	2 cut(s)	191, 296
AvaI	CYCGRG	1 cut(s)	274
AvaII	GGWCC	2 cut(s)	191, 296
BbvI	GCAGC	2 cut(s)	244, 351
BccI	CCATC	1 cut(s)	209
BclI	TGATCA	1 cut(s)	130
BcoDI	GTCTC	3 cut(s)	23, 277, 284
BcuI	ACTAGT	1 cut(s)	32
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	4 cut(s)	42, 153, 258, 475
BisI	GCNGC	2 cut(s)	258, 340
BlsI	GCNGC	2 cut(s)	259, 341
Bme18I	GGWCC	2 cut(s)	191, 296
BmeT110I	CYCGRG	1 cut(s)	274
BmgT120I	GGNCC	2 cut(s)	191, 296
BmiI	GGNNCC	3 cut(s)	81, 192, 297
BmsI	GCATC	1 cut(s)	388
BsaWI	WCCGGW	1 cut(s)	426
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 311
Bse1I	ACTGG	1 cut(s)	404
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	2 cut(s)	95, 311
BseNI	ACTGG	1 cut(s)	404
BseXI	GCAGC	2 cut(s)	244, 351
BsiHKCI	CYCGRG	1 cut(s)	274
BsiSI	CCGG	1 cut(s)	427
BslFI	GGGAC	2 cut(s)	204, 309
BslI	CCNNNNNNNGG	2 cut(s)	95, 311
BsmAI	GTCTC	3 cut(s)	23, 277, 284
BsmFI	GGGAC	2 cut(s)	204, 309
BsoBI	CYCGRG	1 cut(s)	274
Bsp143I	GATC	4 cut(s)	3, 130, 235, 329
BspACI	CCGC	3 cut(s)	355, 383, 460
BspLI	GGNNCC	3 cut(s)	81, 192, 297
BspMAI	CTGCAG	3 cut(s)	46, 157, 262
BsrBI	CCGCTC	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	404
BssMI	GATC	4 cut(s)	3, 130, 235, 329
BstENI	CCTNNNNNAGG	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	379
BstHHI	GCGC	1 cut(s)	344
BstKTI	GATC	4 cut(s)	6, 133, 238, 332
BstMAI	GTCTC	3 cut(s)	23, 277, 284
BstMBI	GATC	4 cut(s)	3, 130, 235, 329
BstMWI	GCNNNNNNNGC	1 cut(s)	348
BstSFI	CTRYAG	4 cut(s)	42, 153, 258, 475
BstV1I	GCAGC	2 cut(s)	244, 351
BtsCI	GGATG	1 cut(s)	379
BtsIMutI	CAGTG	1 cut(s)	411
CfoI	GCGC	1 cut(s)	344
Cfr13I	GGNCC	2 cut(s)	191, 296
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	4 cut(s)	17, 128, 269, 386
CviJI	RGCY	2 cut(s)	422, 433
CviKI_1	RGCY	2 cut(s)	422, 433
CviQI	GTAC	1 cut(s)	99
DpnI	GATC	4 cut(s)	5, 132, 237, 331
DpnII	GATC	4 cut(s)	3, 130, 235, 329
DraIII	CACNNNGTG	1 cut(s)	107
Eco47I	GGWCC	2 cut(s)	191, 296
Eco88I	CYCGRG	1 cut(s)	274
EcoNI	CCTNNNNNAGG	1 cut(s)	93
EcoT22I	ATGCAT	1 cut(s)	381
FaeI	CATG	4 cut(s)	20, 131, 272, 389
FaqI	GGGAC	2 cut(s)	204, 309
FatI	CATG	4 cut(s)	16, 127, 268, 385
FauI	CCCGC	2 cut(s)	362, 453
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	2 cut(s)	258, 340
FokI	GGATG	1 cut(s)	366
Fsp4HI	GCNGC	2 cut(s)	258, 340
FspBI	CTAG	1 cut(s)	33
GlaI	GCGC	1 cut(s)	343
GluI	GCNGC	2 cut(s)	258, 340
HapII	CCGG	1 cut(s)	427
HhaI	GCGC	1 cut(s)	344
Hin1II	CATG	4 cut(s)	20, 131, 272, 389
Hin6I	GCGC	1 cut(s)	342
HinP1I	GCGC	1 cut(s)	342
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	6 cut(s)	140, 172, 209, 219, 245, 277
HpaII	CCGG	1 cut(s)	427
Hpy166II	GTNNAC	2 cut(s)	101, 443
Hpy188I	TCNGA	4 cut(s)	208, 214, 334, 485
Hpy188III	TCNNGA	4 cut(s)	58, 189, 274, 294
Hpy8I	GTNNAC	2 cut(s)	101, 443
HpyAV	CCTTC	3 cut(s)	233, 335, 376
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	5 cut(s)	44, 124, 155, 260, 379
HpyF10VI	GCNNNNNNNGC	1 cut(s)	348
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	4 cut(s)	20, 131, 272, 389
HspAI	GCGC	1 cut(s)	342
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	4 cut(s)	3, 130, 235, 329
LpnPI	CCDG	9 cut(s)	30, 81, 119, 224, 297, 361, 384, 417, 440
Lsp1109I	GCAGC	2 cut(s)	244, 351
LweI	GCATC	1 cut(s)	388
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	1 cut(s)	232
MalI	GATC	4 cut(s)	5, 132, 237, 331
MbiI	CCGCTC	1 cut(s)	357
MboI	GATC	4 cut(s)	3, 130, 235, 329
MboII	GAAGA	1 cut(s)	218
MluCI	AATT	1 cut(s)	70
MlyI	GAGTC	2 cut(s)	181, 286
MmeI	TCCRAC	1 cut(s)	434
MnlI	CCTC	1 cut(s)	13
Mph1103I	ATGCAT	1 cut(s)	381
MslI	CAYNNNNRTG	1 cut(s)	384
MspI	CCGG	1 cut(s)	427
MwoI	GCNNNNNNNGC	1 cut(s)	348
NdeII	GATC	4 cut(s)	3, 130, 235, 329
NlaIII	CATG	4 cut(s)	20, 131, 272, 389
NlaIV	GGNNCC	3 cut(s)	81, 192, 297
NsiI	ATGCAT	1 cut(s)	381
PaeR7I	CTCGAG	1 cut(s)	274
PfeI	GAWTC	4 cut(s)	140, 209, 219, 245
PkrI	GCNGC	2 cut(s)	259, 341
PleI	GAGTC	2 cut(s)	180, 285
PpsI	GAGTC	2 cut(s)	180, 285
PsiI	TTATAA	3 cut(s)	68, 75, 179
PspN4I	GGNNCC	3 cut(s)	81, 192, 297
PspPI	GGNCC	2 cut(s)	191, 296
PstI	CTGCAG	3 cut(s)	46, 157, 262
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
RseI	CAYNNNNRTG	1 cut(s)	384
SatI	GCNGC	2 cut(s)	258, 340
Sau3AI	GATC	4 cut(s)	3, 130, 235, 329
Sau96I	GGNCC	2 cut(s)	191, 296
SchI	GAGTC	2 cut(s)	181, 286
SetI	ASST	9 cut(s)	24, 91, 100, 202, 235, 268, 307, 424, 435
SfaNI	GCATC	1 cut(s)	388
SfcI	CTRYAG	4 cut(s)	42, 153, 258, 475
Sfr274I	CTCGAG	1 cut(s)	274
SinI	GGWCC	2 cut(s)	191, 296
SlaI	CTCGAG	1 cut(s)	274
SmiMI	CAYNNNNRTG	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
SpeI	ACTAGT	1 cut(s)	32
Sse9I	AATT	1 cut(s)	70
SsiI	CCGC	3 cut(s)	355, 383, 460
SspMI	CTAG	1 cut(s)	33
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	3 cut(s)	59, 275, 328
TasI	AATT	1 cut(s)	70
TfiI	GAWTC	4 cut(s)	140, 209, 219, 245
TscAI	CASTG	1 cut(s)	411
TseI	GCWGC	2 cut(s)	257, 339
TspDTI	ATGAA	1 cut(s)	402
TspRI	CASTG	1 cut(s)	411
VpaK11BI	GGWCC	2 cut(s)	191, 296
XagI	CCTNNNNNAGG	1 cut(s)	93
XhoI	CTCGAG	1 cut(s)	274
XspI	CTAG	1 cut(s)	33
Zsp2I	ATGCAT	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.