Rroxscaffold_3G00270270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000995
Physical Location & Seq
Reverse (-)
62886971 .. 62890606
3636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00270270.1

Sequence Viewer

Length: 1044 bp
ATGGATGGTCATCCCACTTTGGTTTTCAAGCCTGTTTACAAGTCTTTCAAATTCAAAACCTTTGAAGATATGGAAGGACTGAAGGTAGAAAAGAATACCAGTTTGAAAGACAACAATGTATTCATGGCCGATCCTAAGAGTAAAGATCCCGAGATGGTTCAAAGTCCACATCCAGATGAGAAATGGAAGGCTGCTATTGACTATGACTTACCAGAGTTGGTTGCTTTCCTTCAAGATAGTGGTCACGAGTTTGTTAAGGACATTTGCATTGACAGTGAAGTGCTATCTCAGAATAAATGTTTGGAAGAGAACTGTGATTTGAATCTTAATAGTGTCTCTTGCATGGTAATTAGCTCTGATGCCGAAAGCAGCAGCGAATCAACTGCTGAATCTCAGGACTCATTAGTGTCATTGAATTCAAGTGTGTCGAAACATATATCCGAGCATGTGTGCAAGGAGGATGTAAGCAAGCAAAGTGGTTTTGAGGACTTTACAATTGAAGATGGAGAGCATTTTGGAGAAACAGATGATACTTCAAGTGATCATTCAACCAAGAAGACCATATCTGAAACACTGCTTCAAATTAGACAGGATCCAACTAAGGCAGTCTTGTCAGATTCAGTGGTAGTATCCTCAACTGAGGCAATTGATGACAATAGGCGGAGCAAAAACTCTCTCAAATCTGCCTTAGAGAATGCAAGAAGAGGGGAGATATTTCCTCCAAGTGTAGGGTGTCATTTTCGGAATTCATCCGAAGATGGGATGTCTGATAATGTAACAGAATCTAGTCAATCACAACATCATCTCTGCAGAGAATCCAGTTCATCAGTTTCAGGGCATTTAGCAATATACTCAGGAGCCATACCAAGTTTTGGTAGCATCTCTTTCCGATCAAACAGCAGCACAACTAGCTCTAGGTCTTTTACTTTTCCAATATTATCCTCAGAATGGGTCGGCAGTCCAGTGAGAATGGTTGAAGCTGATCGGACACAATTACGAAGGCATCGTCGTTGGCGGGTACGATTTCTGTGTTGTAGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

347

Amino Acids

38.67

Weight (kDa)

5.16

Isoelectric Point (pI)

66.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 872
AciI CCGC 2 cut(s) 661, 1015
AclWI GGATC 4 cut(s) 125, 140, 587, 600
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 3 cut(s) 50, 415, 745
AcuI CTGAAG 1 cut(s) 101
AfaI GTAC 1 cut(s) 1020
AfiI CCNNNNNNNGG 4 cut(s) 728, 759, 872, 948
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
AluBI AGCT 4 cut(s) 354, 912, 980, 1038
AluI AGCT 4 cut(s) 354, 912, 980, 1038
Alw26I GTCTC 1 cut(s) 340
AlwI GGATC 4 cut(s) 125, 140, 587, 600
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 4 cut(s) 191, 369, 372, 900
ApoI RAATTY 3 cut(s) 50, 415, 745
ArsI GACNNNNNNTTYG 2 cut(s) 991, 1023
AvaI CYCGRG 1 cut(s) 149
BamHI GGATCC 1 cut(s) 592
BauI CACGAG 1 cut(s) 245
BbsI GAAGAC 1 cut(s) 563
BbvI GCAGC 4 cut(s) 178, 381, 384, 912
BccI CCATC 3 cut(s) 148, 497, 752
BcgI CGANNNNNNTGC 2 cut(s) 365, 399
BciVI GTATCC 1 cut(s) 640
BclI TGATCA 1 cut(s) 541
BcoDI GTCTC 1 cut(s) 340
BfaI CTAG 3 cut(s) 786, 909, 915
BfmI CTRYAG 1 cut(s) 808
BfuI GTATCC 1 cut(s) 640
BisI GCNGC 4 cut(s) 192, 370, 373, 901
BlsI GCNGC 4 cut(s) 193, 371, 374, 902
BmeT110I CYCGRG 1 cut(s) 149
BmiI GGNNCC 2 cut(s) 594, 859
BmsI GCATC 3 cut(s) 349, 888, 1012
BpiI GAAGAC 1 cut(s) 563
BsaBI GATNNNNATC 2 cut(s) 9, 321
Bsc4I CCNNNNNNNGG 4 cut(s) 728, 759, 872, 948
Bse1I ACTGG 3 cut(s) 99, 819, 962
Bse8I GATNNNNATC 2 cut(s) 9, 321
BseGI GGATG 6 cut(s) 10, 10, 169, 466, 749, 768
BseJI GATNNNNATC 2 cut(s) 9, 321
BseLI CCNNNNNNNGG 4 cut(s) 728, 759, 872, 948
BseMII CTCAG 5 cut(s) 302, 407, 630, 867, 957
BseNI ACTGG 3 cut(s) 99, 819, 962
BseXI GCAGC 4 cut(s) 178, 381, 384, 912
BshFI GGCC 1 cut(s) 128
BsiHKCI CYCGRG 1 cut(s) 149
BslI CCNNNNNNNGG 4 cut(s) 728, 759, 872, 948
BsmAI GTCTC 1 cut(s) 340
BsmI GAATGC 1 cut(s) 700
BsnI GGCC 1 cut(s) 128
BsoBI CYCGRG 1 cut(s) 149
Bsp143I GATC 6 cut(s) 130, 145, 541, 592, 890, 982
BspACI CCGC 2 cut(s) 661, 1015
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 5 cut(s) 301, 406, 631, 866, 956
BspLI GGNNCC 2 cut(s) 594, 859
BspMAI CTGCAG 1 cut(s) 812
BspPI GGATC 4 cut(s) 125, 140, 587, 600
BsrI ACTGG 3 cut(s) 99, 819, 962
BssMI GATC 6 cut(s) 130, 145, 541, 592, 890, 982
BssSI CACGAG 1 cut(s) 245
Bst2BI CACGAG 1 cut(s) 245
Bst4CI ACNGT 2 cut(s) 275, 314
Bst6I CTCTTC 2 cut(s) 300, 697
BstC8I GCNNGC 1 cut(s) 470
BstDEI CTNAG 8 cut(s) 135, 288, 393, 600, 639, 688, 853, 943
BstF5I GGATG 6 cut(s) 10, 10, 169, 466, 749, 768
BstKTI GATC 6 cut(s) 133, 148, 544, 595, 893, 985
BstMAI GTCTC 1 cut(s) 340
BstMBI GATC 6 cut(s) 130, 145, 541, 592, 890, 982
BstMWI GCNNNNNNNGC 1 cut(s) 909
BstNSI RCATGY 1 cut(s) 449
BstSFI CTRYAG 1 cut(s) 808
BstV1I GCAGC 4 cut(s) 178, 381, 384, 912
BstV2I GAAGAC 1 cut(s) 563
BstX2I RGATCY 2 cut(s) 145, 592
BstYI RGATCY 2 cut(s) 145, 592
BsuI GTATCC 1 cut(s) 640
BsuRI GGCC 1 cut(s) 128
BtsCI GGATG 6 cut(s) 10, 10, 169, 466, 749, 768
BtsI GCAGTG 1 cut(s) 572
BtsIMutI CAGTG 4 cut(s) 280, 572, 627, 969
Cac8I GCNNGC 1 cut(s) 470
Csp6I GTAC 1 cut(s) 1019
CspCI CAANNNNNGTGG 2 cut(s) 457, 492
CviAII CATG 3 cut(s) 124, 343, 446
CviJI RGCY 8 cut(s) 31, 128, 191, 354, 860, 912, 980, 1038
CviKI_1 RGCY 8 cut(s) 31, 128, 191, 354, 860, 912, 980, 1038
CviQI GTAC 1 cut(s) 1019
DdeI CTNAG 8 cut(s) 135, 288, 393, 600, 639, 688, 853, 943
DpnI GATC 6 cut(s) 132, 147, 543, 594, 892, 984
DpnII GATC 6 cut(s) 130, 145, 541, 592, 890, 982
EaeI YGGCCR 1 cut(s) 126
Eam1104I CTCTTC 2 cut(s) 300, 697
EarI CTCTTC 2 cut(s) 300, 697
EciI GGCGGA 1 cut(s) 676
Eco57I CTGAAG 1 cut(s) 101
Eco88I CYCGRG 1 cut(s) 149
EcoRI GAATTC 2 cut(s) 415, 745
FaeI CATG 3 cut(s) 127, 346, 449
FalI AAGNNNNNCTT 2 cut(s) 593, 625
FatI CATG 3 cut(s) 123, 342, 445
FauI CCCGC 1 cut(s) 1008
FbaI TGATCA 1 cut(s) 541
Fnu4HI GCNGC 4 cut(s) 192, 370, 373, 901
FokI GGATG 5 cut(s) 17, 156, 473, 736, 775
Fsp4HI GCNGC 4 cut(s) 192, 370, 373, 901
FspBI CTAG 3 cut(s) 786, 909, 915
GluI GCNGC 4 cut(s) 192, 370, 373, 901
HaeIII GGCC 1 cut(s) 128
Hin1II CATG 3 cut(s) 127, 346, 449
HinfI GANTC 7 cut(s) 322, 377, 389, 398, 617, 782, 815
Hpy166II GTNNAC 2 cut(s) 37, 167
Hpy188III TCNNGA 6 cut(s) 149, 173, 233, 245, 395, 855
Hpy8I GTNNAC 2 cut(s) 37, 167
Hpy99I CGWCG 1 cut(s) 1011
HpyAV CCTTC 5 cut(s) 68, 76, 181, 239, 993
HpyCH4III ACNGT 2 cut(s) 275, 314
HpyCH4V TGCA 5 cut(s) 267, 342, 453, 698, 810
HpyF10VI GCNNNNNNNGC 1 cut(s) 909
HpyF3I CTNAG 8 cut(s) 135, 288, 393, 600, 639, 688, 853, 943
Hsp92II CATG 3 cut(s) 127, 346, 449
Ksp22I TGATCA 1 cut(s) 541
Kzo9I GATC 6 cut(s) 130, 145, 541, 592, 890, 982
LmnI GCTCC 2 cut(s) 663, 857
Lsp1109I GCAGC 4 cut(s) 178, 381, 384, 912
LweI GCATC 3 cut(s) 349, 888, 1012
MaeI CTAG 3 cut(s) 786, 909, 915
MaeIII GTNAC 2 cut(s) 242, 775
MalI GATC 6 cut(s) 132, 147, 543, 594, 892, 984
MboI GATC 6 cut(s) 130, 145, 541, 592, 890, 982
MboII GAAGA 6 cut(s) 77, 317, 512, 568, 714, 767
MfeI CAATTG 2 cut(s) 495, 645
MflI RGATCY 2 cut(s) 145, 592
MluCI AATT 8 cut(s) 50, 348, 415, 495, 582, 645, 745, 992
MlyI GAGTC 1 cut(s) 392
MmeI TCCRAC 1 cut(s) 620
MnlI CCTC 7 cut(s) 451, 478, 634, 643, 698, 729, 952
MseI TTAA 2 cut(s) 255, 327
MslI CAYNNNNRTG 1 cut(s) 174
MunI CAATTG 2 cut(s) 495, 645
Mva1269I GAATGC 1 cut(s) 700
MwoI GCNNNNNNNGC 1 cut(s) 909
NdeII GATC 6 cut(s) 130, 145, 541, 592, 890, 982
NlaIII CATG 3 cut(s) 127, 346, 449
NlaIV GGNNCC 2 cut(s) 594, 859
NmuCI GTSAC 1 cut(s) 242
NspI RCATGY 1 cut(s) 449
PcsI WCGNNNNNNNCGW 1 cut(s) 1003
PctI GAATGC 1 cut(s) 700
PfeI GAWTC 6 cut(s) 322, 377, 389, 617, 782, 815
PflMI CCANNNNNTGG 1 cut(s) 872
PkrI GCNGC 4 cut(s) 193, 371, 374, 902
PleI GAGTC 1 cut(s) 392
PpsI GAGTC 1 cut(s) 392
PspN4I GGNNCC 2 cut(s) 594, 859
PstI CTGCAG 1 cut(s) 812
PsuI RGATCY 2 cut(s) 145, 592
RsaI GTAC 1 cut(s) 1020
RsaNI GTAC 1 cut(s) 1019
RseI CAYNNNNRTG 1 cut(s) 174
SaqAI TTAA 2 cut(s) 255, 327
SatI GCNGC 4 cut(s) 192, 370, 373, 901
Sau3AI GATC 6 cut(s) 130, 145, 541, 592, 890, 982
SchI GAGTC 1 cut(s) 392
SetI ASST 7 cut(s) 62, 87, 356, 914, 920, 982, 1040
SfaNI GCATC 3 cut(s) 349, 888, 1012
SfcI CTRYAG 1 cut(s) 808
SmiMI CAYNNNNRTG 1 cut(s) 174
Sse9I AATT 8 cut(s) 50, 348, 415, 495, 582, 645, 745, 992
SsiI CCGC 2 cut(s) 661, 1015
SspI AATATT 1 cut(s) 936
SspMI CTAG 3 cut(s) 786, 909, 915
TaaI ACNGT 2 cut(s) 275, 314
TaqI TCGA 1 cut(s) 428
TasI AATT 8 cut(s) 50, 348, 415, 495, 582, 645, 745, 992
TfiI GAWTC 6 cut(s) 322, 377, 389, 617, 782, 815
Tru1I TTAA 2 cut(s) 255, 327
Tru9I TTAA 2 cut(s) 255, 327
TscAI CASTG 4 cut(s) 280, 579, 627, 969
TseFI GTSAC 1 cut(s) 242
TseI GCWGC 4 cut(s) 191, 369, 372, 900
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 3 cut(s) 112, 738, 813
TspRI CASTG 4 cut(s) 280, 579, 627, 969
Van91I CCANNNNNTGG 1 cut(s) 872
XapI RAATTY 3 cut(s) 50, 415, 745
XceI RCATGY 1 cut(s) 449
XcmI CCANNNNNNNNNTGG 1 cut(s) 180
XspI CTAG 3 cut(s) 786, 909, 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.