Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000995

Physical Location & Seq

Genomic Coordinates Reverse (-)

21853923 .. 21867263

Gene Structure 13341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG115500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCAGAGGGAACCGGTGTTTGGCCAATTAAGTTTAAGCCACAAGCCTGATTATAAACCTTTTGATCACAATGAGATTACTCTGAATTCTGGGGGATTACAATCAGCAAATTGGATTGGGAAGGAAAGTCAGACCAGGGTTTTGTTTGATTTGAAGGACAATGAGGAAGATGCTGTTCAAAATGATGGAATTGACTTGACTGCATCAAGATTTGATTGTTCAAAGAGTGTGGATGATTTGGAAACCTGTAATGAAGGTGAAGTTAAAGGTTTTGCGCCTGAAAAATTAGAATCTTTAGGGAAGCAATCAGAATATTATATGGACAAAAGTGTTACAGAATGCAACTTGCCAGAACTGACAGTTTGTTACAAAGAGAGTAGTTGCAATACTATCAAGGATATCTGCATAGATGAGGGAGTGCCTTCCCAAGAGAAGATCCGGTTTGAGACAGACGTGGATGAGAAGGCATTTTGCACTTATTTGTCTCCTGATAAGGATCAGAAACACCTACTGCTTGAACAACAAATGGACATTTTTATGACCATTCCTGATGATTTCAAGTCTTCTGCACAGAAATATGATGTAAAGAAGGATTTTGTCATTGCTTGTGATGCCAAGGATCTGGTGCAGAGAGAAGAAGCAATGTATGATGCATCAGAGAAAACTGCAATTGATGTGTCCAGAGACATGATTTCCCTTGAAAACTTGCGAACACAGAATTTGAACTCCAAGTCCTCTAGTAAGGCCAGCAATGAAGCTGTACAAGATACTGTTCAGGGAGGTTTCAGGGAGAGACAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

267

Amino Acids

30.27

Weight (kDa)

4.54

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03810 AT2G03810 AT2G03810 AT2G03810 AT2G03810 AT2G03810 AT2G03810
fragaria_vesca	FvH4_4g29290 FvH4_4g29290 FvH4_4g29290 FvH4_5g13400 FvH4_5g13400
malus_domestica	MD06G1205800.v1.1 MD13G1056500.v1.1 MD14G1216700.v1.1 MD16G1055400.v1.1
prunus_persica	Prupe.1G293500_v2.0.a1 Prupe.1G293500_v2.0.a1 Prupe.1G293500_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1
pyrus_communis	pycom06g18360 pycom13g05050 pycom14g17950 pycom16g04830
rosa_chinensis	RchiOBHm_Chr4g0437341 RchiOBHm_Chr7g0183741
rosa_laevigata	RLG00000005027 RLG00000006444
rosa_multiflora	Rmu_co8101974.1_g000001 Rmu_co8329495.1_g000001 Rmu_sc0000893.1_g000016 Rmu_sc0003610.1_g000030 Rmu_sc0004759.1_g000016
rosa_roxburghii	Rroxscaffold_3G00270270 Rroxscaffold_5G00378490
rosa_rugosa	Rorug04G0299600.1 Rorug04G0299700 Rorug04G0299800 Rorug04G0299900 Rorug04G0300000 Rorug04G0300100 Rorug06G0459700 Rorug06G0459800 Rorug06G0459900
rosa_samantha	Rh4AG354900 Rh4BG364800 Rh4CG115500 Rh4CG378900 Rh4DG310700 Rh4DG358600 Rh7AG060600 Rh7BG060700 Rh7CG062300 Rh7DG060700
rosa_wichuraiana	Rw4G031110 Rw7G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	54
AclWI	GGATC	3 cut(s)	430, 504, 627
AcoI	YGGCCR	1 cut(s)	22
AcsI	RAATTY	2 cut(s)	85, 718
AfaI	GTAC	1 cut(s)	762
AfiI	CCNNNNNNNGG	1 cut(s)	20
AgeI	ACCGGT	1 cut(s)	13
AgsI	TTSAA	7 cut(s)	154, 179, 222, 518, 559, 701, 724
AjiI	CACGTC	1 cut(s)	454
AjnI	CCWGG	1 cut(s)	134
AjuI	GAANNNNNNNTTGG	1 cut(s)	35
AloI	GAACNNNNNNTCC	2 cut(s)	716, 748
AluBI	AGCT	1 cut(s)	758
AluI	AGCT	1 cut(s)	758
Alw26I	GTCTC	4 cut(s)	440, 489, 678, 787
AlwI	GGATC	3 cut(s)	430, 504, 627
AoxI	GGCC	2 cut(s)	22, 744
ApoI	RAATTY	2 cut(s)	85, 718
ArsI	GACNNNNNNTTYG	2 cut(s)	124, 156
AsiGI	ACCGGT	1 cut(s)	13
AspLEI	GCGC	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	269
BalI	TGGCCA	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	555
BccI	CCATC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	136
BclI	TGATCA	1 cut(s)	64
BcoDI	GTCTC	4 cut(s)	440, 489, 678, 787
BfaI	CTAG	1 cut(s)	738
Bme1390I	CCNGG	1 cut(s)	136
BmgBI	CACGTC	1 cut(s)	454
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	136
BmsI	GCATC	5 cut(s)	160, 212, 601, 640, 662
BpiI	GAAGAC	1 cut(s)	555
BsaBI	GATNNNNATC	2 cut(s)	100, 495
BsaJI	CCNNGG	2 cut(s)	135, 615
BsaWI	WCCGGW	2 cut(s)	13, 438
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse118I	RCCGGY	1 cut(s)	13
Bse3DI	GCAATG	3 cut(s)	600, 648, 757
Bse8I	GATNNNNATC	2 cut(s)	100, 495
BseBI	CCWGG	1 cut(s)	136
BseDI	CCNNGG	2 cut(s)	135, 615
BseGI	GGATG	2 cut(s)	238, 463
BseJI	GATNNNNATC	2 cut(s)	100, 495
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMI	GCAATG	3 cut(s)	600, 648, 757
BsgI	GTGCAG	2 cut(s)	552, 647
BshFI	GGCC	2 cut(s)	24, 746
BshTI	ACCGGT	1 cut(s)	13
BsiSI	CCGG	2 cut(s)	14, 439
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	4 cut(s)	440, 489, 678, 787
BsmI	GAATGC	1 cut(s)	344
BsnI	GGCC	2 cut(s)	24, 746
Bsp1407I	TGTACA	1 cut(s)	760
Bsp143I	GATC	4 cut(s)	64, 435, 496, 619
BspANI	GGCC	2 cut(s)	24, 746
BspLI	GGNNCC	1 cut(s)	12
BspPI	GGATC	3 cut(s)	430, 504, 627
BsrDI	GCAATG	3 cut(s)	600, 648, 757
BsrFI	RCCGGY	1 cut(s)	13
BsrGI	TGTACA	1 cut(s)	760
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	2 cut(s)	135, 615
BssMI	GATC	4 cut(s)	64, 435, 496, 619
BssT1I	CCWWGG	1 cut(s)	615
Bst2UI	CCWGG	1 cut(s)	136
Bst4CI	ACNGT	2 cut(s)	361, 772
BstAUI	TGTACA	1 cut(s)	760
BstC8I	GCNNGC	1 cut(s)	748
BstF5I	GGATG	2 cut(s)	238, 463
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	4 cut(s)	67, 438, 499, 622
BstMAI	GTCTC	4 cut(s)	440, 489, 678, 787
BstMBI	GATC	4 cut(s)	64, 435, 496, 619
BstMWI	GCNNNNNNNGC	1 cut(s)	611
BstNI	CCWGG	1 cut(s)	136
BstSCI	CCNGG	1 cut(s)	134
BstV2I	GAAGAC	1 cut(s)	555
BstX2I	RGATCY	2 cut(s)	435, 619
BstXI	CCANNNNNNTGG	1 cut(s)	622
BstYI	RGATCY	2 cut(s)	435, 619
BsuRI	GGCC	2 cut(s)	24, 746
BtrI	CACGTC	1 cut(s)	454
BtsCI	GGATG	2 cut(s)	238, 463
Cac8I	GCNNGC	1 cut(s)	748
CfoI	GCGC	1 cut(s)	277
Cfr10I	RCCGGY	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	761
CspAI	ACCGGT	1 cut(s)	13
CspCI	CAANNNNNGTGG	2 cut(s)	210, 245
CviAII	CATG	1 cut(s)	688
CviJI	RGCY	5 cut(s)	24, 39, 46, 746, 758
CviKI_1	RGCY	5 cut(s)	24, 39, 46, 746, 758
CviQI	GTAC	1 cut(s)	761
DpnI	GATC	4 cut(s)	66, 437, 498, 621
DpnII	GATC	4 cut(s)	64, 435, 496, 619
EaeI	YGGCCR	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	615
Eco32I	GATATC	1 cut(s)	400
EcoRI	GAATTC	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	134
EcoRV	GATATC	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	615
EcoT22I	ATGCAT	1 cut(s)	655
ErhI	CCWWGG	1 cut(s)	615
FaeI	CATG	1 cut(s)	691
FaiI	YATR	8 cut(s)	54, 318, 320, 407, 539, 579, 648, 689
FatI	CATG	1 cut(s)	687
FbaI	TGATCA	1 cut(s)	64
FokI	GGATG	2 cut(s)	245, 470
FspBI	CTAG	1 cut(s)	738
GlaI	GCGC	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	24, 746
HapII	CCGG	2 cut(s)	14, 439
HhaI	GCGC	1 cut(s)	277
Hin1II	CATG	1 cut(s)	691
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HinfI	GANTC	1 cut(s)	290
HpaII	CCGG	2 cut(s)	14, 439
HphI	GGTGA	1 cut(s)	269
Hpy188I	TCNGA	5 cut(s)	84, 132, 310, 501, 658
Hpy188III	TCNNGA	4 cut(s)	207, 488, 548, 681
HpyAV	CCTTC	6 cut(s)	115, 148, 248, 432, 457, 583
HpyCH4III	ACNGT	2 cut(s)	361, 772
HpyCH4IV	ACGT	1 cut(s)	453
HpyF10VI	GCNNNNNNNGC	1 cut(s)	611
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	1 cut(s)	691
HspAI	GCGC	1 cut(s)	275
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	4 cut(s)	64, 435, 496, 619
LweI	GCATC	5 cut(s)	160, 212, 601, 640, 662
MaeI	CTAG	1 cut(s)	738
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	2 cut(s)	331, 365
MalI	GATC	4 cut(s)	66, 437, 498, 621
MboI	GATC	4 cut(s)	64, 435, 496, 619
MboII	GAAGA	4 cut(s)	179, 445, 555, 647
MfeI	CAATTG	1 cut(s)	669
MflI	RGATCY	2 cut(s)	435, 619
MlsI	TGGCCA	1 cut(s)	24
MluCI	AATT	7 cut(s)	26, 85, 109, 189, 284, 669, 718
MluNI	TGGCCA	1 cut(s)	24
MnlI	CCTC	4 cut(s)	157, 406, 745, 773
Mox20I	TGGCCA	1 cut(s)	24
Mph1103I	ATGCAT	1 cut(s)	655
MscI	TGGCCA	1 cut(s)	24
MseI	TTAA	3 cut(s)	29, 35, 264
MslI	CAYNNNNRTG	1 cut(s)	536
Msp20I	TGGCCA	1 cut(s)	24
MspI	CCGG	2 cut(s)	14, 439
MspR9I	CCNGG	1 cut(s)	136
MunI	CAATTG	1 cut(s)	669
Mva1269I	GAATGC	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	136
MwoI	GCNNNNNNNGC	1 cut(s)	611
NdeII	GATC	4 cut(s)	64, 435, 496, 619
NlaIII	CATG	1 cut(s)	691
NlaIV	GGNNCC	1 cut(s)	12
NsiI	ATGCAT	1 cut(s)	655
PctI	GAATGC	1 cut(s)	344
PfeI	GAWTC	1 cut(s)	290
PinAI	ACCGGT	1 cut(s)	13
PsiI	TTATAA	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	12
PsuI	RGATCY	2 cut(s)	435, 619
RsaI	GTAC	1 cut(s)	762
RsaNI	GTAC	1 cut(s)	761
RseI	CAYNNNNRTG	1 cut(s)	536
SaqAI	TTAA	3 cut(s)	29, 35, 264
Sau3AI	GATC	4 cut(s)	64, 435, 496, 619
ScrFI	CCNGG	1 cut(s)	136
SetI	ASST	8 cut(s)	61, 248, 259, 271, 456, 510, 760, 784
SfaNI	GCATC	5 cut(s)	160, 212, 601, 640, 662
SmiMI	CAYNNNNRTG	1 cut(s)	536
Sse9I	AATT	7 cut(s)	26, 85, 109, 189, 284, 669, 718
SspI	AATATT	1 cut(s)	314
SspMI	CTAG	1 cut(s)	738
StyD4I	CCNGG	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	615
TaaI	ACNGT	2 cut(s)	361, 772
TaiI	ACGT	1 cut(s)	456
TasI	AATT	7 cut(s)	26, 85, 109, 189, 284, 669, 718
TatI	WGTACW	1 cut(s)	760
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	3 cut(s)	29, 35, 264
Tru9I	TTAA	3 cut(s)	29, 35, 264
TspDTI	ATGAA	2 cut(s)	267, 768
XapI	RAATTY	2 cut(s)	85, 718
XspI	CTAG	1 cut(s)	738
Zsp2I	ATGCAT	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.