Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000995

Physical Location & Seq

Genomic Coordinates Reverse (-)

64434661 .. 64436247

Gene Structure 1587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005027

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGATGGTCATCCCACTTTGGTTTTCAAGCCTGTTTACAAGTCTTTCAAATTCAAAACCTTTGAAGATATGGAAGGACTGAAGGTAGAAAAGAATACCAGATTGAAAGACAACAATGTATTCATGGCCAATCCTAAGAGTAAAGATCCCGAGGTGGTTCAAAGTCCACATCCAGAAGAGAAATGGAAGGCTGCTATTGACTATGACTTACCAGAGTTGGTTGCTTTCCTTCAAGATAGTGGTCACGAGTTTGTTAAGGACATTTGCATTGACAGTGAAGTGCTATCTCAGAATAAATGTTTGGAAGAGAACTGTGATTTGAATCTTAATAGTGTCTCTTGCATGGTTAGCTCTGATGCCGAAAGCAGCAGAGAATCAACTGCTGAATCTCAGGACTCATTAGTGTCATTGAATTCAAGTGTGTCGAAACATATATCCGAGCATGTGTGCAAGGAGGATGTAAGCAAGCAAAGTGGTTTTGAGGACTTGACAATTGAAGATGGAGAGCATTTTGGAGAAACAGATGATACTTCAAGTGATCATTCAACCAAGAAGACCATATCTGAAACACTGCTTCAAATTAGACAGGATCCAACTAAGGCAGTCTTGTCAGATTCAGTGGTAGTATCCTCAACTGAGGCAATTGATGACAATAGGCGGAGCAAAAGCTCTCTCAAATCTGCCTTAGAGAATGCAAGAAGTGGGGAGATATTTCCTCCAAGTGTAGGGTGTCATTCTCGGAATTCATCCGAAGATGGGATGTCTGATAATGTAACAGAATCAAGTCAATCACAACATCATCCCTGCAGAGAATCCAGTTCATCAGTTTCAGGGCATTTAGCAATATACTCAGGAGCCATACCAAGTTTTGGTAGCATCTCTTTTCGATCGAACAGCAGCACAACTAGCTCTAGGTCTTTTACTTTTCCAATACTATCCTCAGAATGGGTCGGCAGTCCAGTGAGAATGGTTGAAGCTGATCGGACACAATTACGAAGGCATCGTCGTTGGGGGGTACGATTTCTGTGTTGTAGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

347

Amino Acids

38.37

Weight (kDa)

5.22

Isoelectric Point (pI)

68.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03810 AT2G03810 AT2G03810 AT2G03810 AT2G03810 AT2G03810 AT2G03810
fragaria_vesca	FvH4_4g29290 FvH4_4g29290 FvH4_4g29290 FvH4_5g13400 FvH4_5g13400
malus_domestica	MD06G1205800.v1.1 MD13G1056500.v1.1 MD14G1216700.v1.1 MD16G1055400.v1.1
prunus_persica	Prupe.1G293500_v2.0.a1 Prupe.1G293500_v2.0.a1 Prupe.1G293500_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1
pyrus_communis	pycom06g18360 pycom13g05050 pycom14g17950 pycom16g04830
rosa_chinensis	RchiOBHm_Chr4g0437341 RchiOBHm_Chr7g0183741
rosa_laevigata	RLG00000005027 RLG00000006444
rosa_multiflora	Rmu_co8101974.1_g000001 Rmu_co8329495.1_g000001 Rmu_sc0000893.1_g000016 Rmu_sc0003610.1_g000030 Rmu_sc0004759.1_g000016
rosa_roxburghii	Rroxscaffold_3G00270270 Rroxscaffold_5G00378490
rosa_rugosa	Rorug04G0299600.1 Rorug04G0299700 Rorug04G0299800 Rorug04G0299900 Rorug04G0300000 Rorug04G0300100 Rorug06G0459700 Rorug06G0459800 Rorug06G0459900
rosa_samantha	Rh4AG354900 Rh4BG364800 Rh4CG115500 Rh4CG378900 Rh4DG310700 Rh4DG358600 Rh7AG060600 Rh7BG060700 Rh7CG062300 Rh7DG060700
rosa_wichuraiana	Rw4G031110 Rw7G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	869
AciI	CCGC	1 cut(s)	658
AclWI	GGATC	3 cut(s)	140, 584, 597
AcoI	YGGCCR	1 cut(s)	126
AcsI	RAATTY	3 cut(s)	50, 412, 742
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	1 cut(s)	1017
AfiI	CCNNNNNNNGG	4 cut(s)	725, 756, 869, 945
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
AluBI	AGCT	5 cut(s)	351, 669, 909, 977, 1035
AluI	AGCT	5 cut(s)	351, 669, 909, 977, 1035
Alw26I	GTCTC	1 cut(s)	340
AlwI	GGATC	3 cut(s)	140, 584, 597
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	3 cut(s)	191, 366, 897
ApoI	RAATTY	3 cut(s)	50, 412, 742
ArsI	GACNNNNNNTTYG	2 cut(s)	988, 1020
AvaI	CYCGRG	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	128
BamHI	GGATCC	1 cut(s)	589
BauI	CACGAG	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	560
BbvI	GCAGC	3 cut(s)	178, 378, 909
BccI	CCATC	2 cut(s)	494, 749
BciVI	GTATCC	1 cut(s)	637
BclI	TGATCA	1 cut(s)	538
BcoDI	GTCTC	1 cut(s)	340
BfaI	CTAG	2 cut(s)	906, 912
BfmI	CTRYAG	1 cut(s)	805
BfuI	GTATCC	1 cut(s)	637
BisI	GCNGC	3 cut(s)	192, 367, 898
BlsI	GCNGC	3 cut(s)	193, 368, 899
BmeT110I	CYCGRG	1 cut(s)	149
BmiI	GGNNCC	2 cut(s)	591, 856
BmsI	GCATC	3 cut(s)	346, 885, 1009
BpiI	GAAGAC	1 cut(s)	560
BsaBI	GATNNNNATC	2 cut(s)	9, 321
BsaJI	CCNNGG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	4 cut(s)	725, 756, 869, 945
Bse1I	ACTGG	2 cut(s)	816, 959
Bse8I	GATNNNNATC	2 cut(s)	9, 321
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	7 cut(s)	10, 10, 169, 463, 746, 765, 799
BseJI	GATNNNNATC	2 cut(s)	9, 321
BseLI	CCNNNNNNNGG	4 cut(s)	725, 756, 869, 945
BseMII	CTCAG	5 cut(s)	302, 404, 627, 864, 954
BseNI	ACTGG	2 cut(s)	816, 959
BseXI	GCAGC	3 cut(s)	178, 378, 909
Bsh1285I	CGRYCG	1 cut(s)	890
BshFI	GGCC	1 cut(s)	128
BsiEI	CGRYCG	1 cut(s)	890
BsiHKCI	CYCGRG	1 cut(s)	149
BslI	CCNNNNNNNGG	4 cut(s)	725, 756, 869, 945
BsmAI	GTCTC	1 cut(s)	340
BsmI	GAATGC	1 cut(s)	697
BsnI	GGCC	1 cut(s)	128
BsoBI	CYCGRG	1 cut(s)	149
Bsp143I	GATC	5 cut(s)	145, 538, 589, 887, 979
BspACI	CCGC	1 cut(s)	658
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	5 cut(s)	301, 403, 628, 863, 953
BspLI	GGNNCC	2 cut(s)	591, 856
BspMAI	CTGCAG	1 cut(s)	809
BspPI	GGATC	3 cut(s)	140, 584, 597
BsrI	ACTGG	2 cut(s)	816, 959
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	5 cut(s)	145, 538, 589, 887, 979
BssSI	CACGAG	1 cut(s)	245
Bst2BI	CACGAG	1 cut(s)	245
Bst4CI	ACNGT	2 cut(s)	275, 314
Bst6I	CTCTTC	2 cut(s)	171, 300
BstC8I	GCNNGC	1 cut(s)	467
BstDEI	CTNAG	8 cut(s)	135, 288, 390, 597, 636, 685, 850, 940
BstF5I	GGATG	7 cut(s)	10, 10, 169, 463, 746, 765, 799
BstKTI	GATC	5 cut(s)	148, 541, 592, 890, 982
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	5 cut(s)	145, 538, 589, 887, 979
BstMCI	CGRYCG	1 cut(s)	890
BstMWI	GCNNNNNNNGC	2 cut(s)	348, 906
BstNSI	RCATGY	1 cut(s)	446
BstSFI	CTRYAG	1 cut(s)	805
BstV1I	GCAGC	3 cut(s)	178, 378, 909
BstV2I	GAAGAC	1 cut(s)	560
BstX2I	RGATCY	2 cut(s)	145, 589
BstYI	RGATCY	2 cut(s)	145, 589
BsuI	GTATCC	1 cut(s)	637
BsuRI	GGCC	1 cut(s)	128
BtsCI	GGATG	7 cut(s)	10, 10, 169, 463, 746, 765, 799
BtsI	GCAGTG	1 cut(s)	569
BtsIMutI	CAGTG	4 cut(s)	280, 569, 624, 966
Cac8I	GCNNGC	1 cut(s)	467
Csp6I	GTAC	1 cut(s)	1016
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CviAII	CATG	3 cut(s)	124, 343, 443
CviJI	RGCY	9 cut(s)	31, 128, 191, 351, 669, 857, 909, 977, 1035
CviKI_1	RGCY	9 cut(s)	31, 128, 191, 351, 669, 857, 909, 977, 1035
CviQI	GTAC	1 cut(s)	1016
DdeI	CTNAG	8 cut(s)	135, 288, 390, 597, 636, 685, 850, 940
DpnI	GATC	5 cut(s)	147, 540, 591, 889, 981
DpnII	GATC	5 cut(s)	145, 538, 589, 887, 979
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	2 cut(s)	171, 300
EarI	CTCTTC	2 cut(s)	171, 300
EciI	GGCGGA	1 cut(s)	673
Eco57I	CTGAAG	1 cut(s)	101
Eco88I	CYCGRG	1 cut(s)	149
EcoRI	GAATTC	2 cut(s)	412, 742
FaeI	CATG	3 cut(s)	127, 346, 446
FalI	AAGNNNNNCTT	2 cut(s)	590, 622
FatI	CATG	3 cut(s)	123, 342, 442
FbaI	TGATCA	1 cut(s)	538
Fnu4HI	GCNGC	3 cut(s)	192, 367, 898
FokI	GGATG	6 cut(s)	17, 156, 470, 733, 772, 786
Fsp4HI	GCNGC	3 cut(s)	192, 367, 898
FspBI	CTAG	2 cut(s)	906, 912
GluI	GCNGC	3 cut(s)	192, 367, 898
HaeIII	GGCC	1 cut(s)	128
Hin1II	CATG	3 cut(s)	127, 346, 446
HinfI	GANTC	7 cut(s)	322, 374, 386, 395, 614, 779, 812
Hpy166II	GTNNAC	2 cut(s)	37, 167
Hpy188III	TCNNGA	6 cut(s)	149, 173, 233, 245, 392, 852
Hpy8I	GTNNAC	2 cut(s)	37, 167
Hpy99I	CGWCG	1 cut(s)	1008
HpyAV	CCTTC	5 cut(s)	68, 76, 181, 239, 990
HpyCH4III	ACNGT	2 cut(s)	275, 314
HpyCH4V	TGCA	5 cut(s)	267, 342, 450, 695, 807
HpyF10VI	GCNNNNNNNGC	2 cut(s)	348, 906
HpyF3I	CTNAG	8 cut(s)	135, 288, 390, 597, 636, 685, 850, 940
Hsp92II	CATG	3 cut(s)	127, 346, 446
Ksp22I	TGATCA	1 cut(s)	538
Kzo9I	GATC	5 cut(s)	145, 538, 589, 887, 979
LmnI	GCTCC	2 cut(s)	660, 854
Lsp1109I	GCAGC	3 cut(s)	178, 378, 909
LweI	GCATC	3 cut(s)	346, 885, 1009
MaeI	CTAG	2 cut(s)	906, 912
MaeIII	GTNAC	2 cut(s)	242, 772
MalI	GATC	5 cut(s)	147, 540, 591, 889, 981
MboI	GATC	5 cut(s)	145, 538, 589, 887, 979
MboII	GAAGA	6 cut(s)	77, 188, 317, 509, 565, 764
MfeI	CAATTG	2 cut(s)	492, 642
MflI	RGATCY	2 cut(s)	145, 589
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	7 cut(s)	50, 412, 492, 579, 642, 742, 989
MluNI	TGGCCA	1 cut(s)	128
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	1 cut(s)	617
MnlI	CCTC	7 cut(s)	145, 448, 475, 631, 640, 726, 949
Mox20I	TGGCCA	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	2 cut(s)	255, 327
Msp20I	TGGCCA	1 cut(s)	128
MunI	CAATTG	2 cut(s)	492, 642
Mva1269I	GAATGC	1 cut(s)	697
MwoI	GCNNNNNNNGC	2 cut(s)	348, 906
NdeII	GATC	5 cut(s)	145, 538, 589, 887, 979
NlaIII	CATG	3 cut(s)	127, 346, 446
NlaIV	GGNNCC	2 cut(s)	591, 856
NmuCI	GTSAC	1 cut(s)	242
NspI	RCATGY	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	1 cut(s)	1000
PctI	GAATGC	1 cut(s)	697
PfeI	GAWTC	6 cut(s)	322, 374, 386, 614, 779, 812
PflMI	CCANNNNNTGG	1 cut(s)	869
PkrI	GCNGC	3 cut(s)	193, 368, 899
Ple19I	CGATCG	1 cut(s)	890
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
PspN4I	GGNNCC	2 cut(s)	591, 856
PstI	CTGCAG	1 cut(s)	809
PsuI	RGATCY	2 cut(s)	145, 589
PvuI	CGATCG	1 cut(s)	890
RsaI	GTAC	1 cut(s)	1017
RsaNI	GTAC	1 cut(s)	1016
SaqAI	TTAA	2 cut(s)	255, 327
SatI	GCNGC	3 cut(s)	192, 367, 898
Sau3AI	GATC	5 cut(s)	145, 538, 589, 887, 979
SchI	GAGTC	1 cut(s)	389
SetI	ASST	9 cut(s)	62, 87, 156, 353, 671, 911, 917, 979, 1037
SfaNI	GCATC	3 cut(s)	346, 885, 1009
SfcI	CTRYAG	1 cut(s)	805
Sse9I	AATT	7 cut(s)	50, 412, 492, 579, 642, 742, 989
SsiI	CCGC	1 cut(s)	658
SspMI	CTAG	2 cut(s)	906, 912
TaaI	ACNGT	2 cut(s)	275, 314
TaqI	TCGA	3 cut(s)	425, 886, 890
TasI	AATT	7 cut(s)	50, 412, 492, 579, 642, 742, 989
TfiI	GAWTC	6 cut(s)	322, 374, 386, 614, 779, 812
Tru1I	TTAA	2 cut(s)	255, 327
Tru9I	TTAA	2 cut(s)	255, 327
TscAI	CASTG	4 cut(s)	280, 576, 624, 966
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	3 cut(s)	191, 366, 897
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	3 cut(s)	112, 735, 810
TspRI	CASTG	4 cut(s)	280, 576, 624, 966
Van91I	CCANNNNNTGG	1 cut(s)	869
XapI	RAATTY	3 cut(s)	50, 412, 742
XceI	RCATGY	1 cut(s)	446
XcmI	CCANNNNNNNNNTGG	1 cut(s)	180
XspI	CTAG	2 cut(s)	906, 912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.