Prupe.5G210100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000995
Physical Location & Seq
Forward (+)
16707022 .. 16711242
4221 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G210100.2

Sequence Viewer

Length: 1194 bp
ATGACGTGCACCTGCCAGGCAAATAGCGAATCCATGGATGAGCATTCAACTGCGGTCTTCAAGCCTGTTTACAAGTCCTTCAAGTTCAAATGTTCTGAAGCCATAAAAGGGTTGAAGGTAGAAAAGAACACCGGTTTGAAAGATAATAATGTATTCATTTCCAATTTGAAAAGTGAAGACAGTGAGGTGGTTCCAAATCAACATCCAGATGATAGCCGGGATATGCATGCTGTCCGGAACGCCTCGAGAGCAAGTGGTTACATGGATTGGAAGGATTCTGTGGATGGAAATGGCCAACATATCCCACATTATACTTGTACTTGCAGTGACAAGGAGGAGAGTAGGGAAAGAAAGGTTGGCATGGACAATGAATTGCCAGAGCTGGTTGCTTTCCTTCAAGAGAGCAGTAATTACCAGTGTTTTAAGGACATTTGCATTGACAAGGAAGTGCCATCTCAGGAAAAATATTTGGTAGAAAACTGTGAGCTGGACCATAGTCGTATCTCTTGCATACTTGACTCTGATATGGACAGCAGCAGTGAATCAATTGGAGAAACTCTGGACTCGGAGTCTTCCATTTCAACTGAGCATGACTGTGACAAGGACGTAAGCGAGCAGTGTGGTTCCAAGAACTTGAAGATTGAAGATGAAAAATACTCTGGAGACAGAGATGATCATTCAACCAAGAAGACCGTATCCGAAACACTGCTTATAGTTAGACAGGGTCCAAATAACGCAGTGCTGGCAAACTCAATGGTATTATCCAAAAGTCAGGCAATTGATGACAACAGCCGCACAAGCAAGGCCTCTGTACGAAGTGACCTGGACGATGCAAGCAGTCTTGGCAAACTCAATGGTATAATCACCATAGATGATGGGAGAGAGGAAGTTACACAAAGTGCAGAGTGCCATCCTCCGGACATAGGAAACATGTTCAGGCCTGATTCGTCCGAAGACGGGATGTCAGCATCTGAACCTTGTTCAGGCCTTTCAGCACTCTCAGGAGGAATACCAAGTTGCGGTAGCATATCTCTTCGGTCAAATAGCAGCACAACTAGCTCCCAGTCTTTTGCTTTTCCCATATTATCCTCGGAATGGAATGGCAGCCCGGCAAGAATGGGGAAAGCTGACCCGAGACAATTACAGAGACACCACCGCCATTGGGTGATGCGTTTTCTCTGCTGTAAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

398

Amino Acids

43.82

Weight (kDa)

4.96

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 20
Acc36I ACCTGC 1 cut(s) 20
AccIII TCCGGA 2 cut(s) 234, 916
AciI CCGC 4 cut(s) 53, 793, 1020, 1156
AcoI YGGCCR 1 cut(s) 292
AcsI RAATTY 1 cut(s) 1187
AcuI CTGAAG 1 cut(s) 117
AdeI CACNNNGTG 1 cut(s) 899
AfaI GTAC 2 cut(s) 319, 813
AfiI CCNNNNNNNGG 8 cut(s) 108, 916, 923, 957, 983, 1019, 1095, 1162
AflIII ACRYGT 1 cut(s) 930
AgeI ACCGGT 1 cut(s) 131
AhdI GACNNNNNGTC 2 cut(s) 568, 961
AjiI CACGTC 1 cut(s) 6
AjnI CCWGG 2 cut(s) 15, 822
AjuI GAANNNNNNNTTGG 2 cut(s) 339, 371
AluBI AGCT 4 cut(s) 382, 487, 1059, 1127
AluI AGCT 4 cut(s) 382, 487, 1059, 1127
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 3 cut(s) 657, 1129, 1141
Alw44I GTGCAC 1 cut(s) 7
AlwNI CAGNNNCTG 1 cut(s) 971
Ama87I CYCGRG 2 cut(s) 244, 1132
Aor13HI TCCGGA 2 cut(s) 234, 916
AoxI GGCC 4 cut(s) 292, 804, 938, 985
ApaLI GTGCAC 1 cut(s) 7
ApeKI GCWGC 3 cut(s) 534, 1047, 1104
ApoI RAATTY 1 cut(s) 1187
AsiGI ACCGGT 1 cut(s) 131
AspS9I GGNCC 2 cut(s) 490, 725
AsuC2I CCSGG 2 cut(s) 218, 1109
AsuHPI GGTGA 2 cut(s) 856, 1177
AvaI CYCGRG 2 cut(s) 244, 1132
AvaII GGWCC 2 cut(s) 490, 725
BaeGI GKGCMC 1 cut(s) 11
BalI TGGCCA 1 cut(s) 294
BbsI GAAGAC 5 cut(s) 49, 183, 564, 695, 960
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 3 cut(s) 546, 1059, 1116
BccI CCATC 4 cut(s) 278, 460, 869, 918
BciT130I CCWGG 2 cut(s) 17, 824
BciVI GTATCC 1 cut(s) 706
BclI TGATCA 1 cut(s) 673
BcnI CCSGG 2 cut(s) 218, 1109
BcoDI GTCTC 3 cut(s) 657, 1129, 1141
BfaI CTAG 1 cut(s) 1056
BfuAI ACCTGC 1 cut(s) 20
BfuI GTATCC 1 cut(s) 706
BisI GCNGC 4 cut(s) 535, 793, 1048, 1105
BlsI GCNGC 4 cut(s) 536, 794, 1049, 1106
Bme1390I CCNGG 4 cut(s) 17, 218, 824, 1109
Bme18I GGWCC 2 cut(s) 490, 725
BmeRI GACNNNNNGTC 2 cut(s) 568, 961
BmeT110I CYCGRG 2 cut(s) 244, 1132
BmgBI CACGTC 1 cut(s) 6
BmgT120I GGNCC 2 cut(s) 490, 725
BmiI GGNNCC 3 cut(s) 192, 625, 726
BmrFI CCNGG 4 cut(s) 17, 218, 824, 1109
BmrI ACTGGG 1 cut(s) 1057
BmsI GCATC 3 cut(s) 820, 977, 1158
BmuI ACTGGG 1 cut(s) 1057
BoxI GACNNNNGTC 1 cut(s) 495
BpiI GAAGAC 5 cut(s) 49, 183, 564, 695, 960
BpmI CTGGAG 1 cut(s) 681
BpuMI CCSGG 2 cut(s) 218, 1109
BsaJI CCNNGG 2 cut(s) 33, 1089
BsaWI WCCGGW 3 cut(s) 131, 234, 916
Bsc4I CCNNNNNNNGG 8 cut(s) 108, 916, 923, 957, 983, 1019, 1095, 1162
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 2 cut(s) 415, 1063
BseAI TCCGGA 2 cut(s) 234, 916
BseBI CCWGG 2 cut(s) 17, 824
BseDI CCNNGG 2 cut(s) 33, 1089
BseGI GGATG 5 cut(s) 43, 202, 289, 910, 966
BseLI CCNNNNNNNGG 8 cut(s) 108, 916, 923, 957, 983, 1019, 1095, 1162
BseMII CTCAG 3 cut(s) 470, 576, 1014
BseNI ACTGG 2 cut(s) 415, 1063
BseRI GAGGAG 1 cut(s) 350
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 3 cut(s) 546, 1059, 1116
BsgI GTGCAG 1 cut(s) 921
BshFI GGCC 4 cut(s) 294, 806, 940, 987
BshTI ACCGGT 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 11
BsiHKCI CYCGRG 2 cut(s) 244, 1132
BsiSI CCGG 5 cut(s) 132, 217, 235, 917, 1109
BslI CCNNNNNNNGG 8 cut(s) 108, 916, 923, 957, 983, 1019, 1095, 1162
BsmAI GTCTC 3 cut(s) 657, 1129, 1141
BsmI GAATGC 1 cut(s) 43
BsnI GGCC 4 cut(s) 294, 806, 940, 987
BsoBI CYCGRG 2 cut(s) 244, 1132
Bsp1286I GDGCHC 1 cut(s) 11
Bsp13I TCCGGA 2 cut(s) 234, 916
Bsp143I GATC 1 cut(s) 673
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 4 cut(s) 53, 793, 1020, 1156
BspANI GGCC 4 cut(s) 294, 806, 940, 987
BspCNI CTCAG 3 cut(s) 469, 577, 1013
BspEI TCCGGA 2 cut(s) 234, 916
BspLI GGNNCC 3 cut(s) 192, 625, 726
BspMI ACCTGC 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 2 cut(s) 415, 1063
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 2 cut(s) 33, 1089
BssMI GATC 1 cut(s) 673
BssT1I CCWWGG 1 cut(s) 33
Bst2UI CCWGG 2 cut(s) 17, 824
Bst4CI ACNGT 4 cut(s) 182, 482, 596, 694
Bst6I CTCTTC 1 cut(s) 1038
BstC8I GCNNGC 4 cut(s) 228, 614, 744, 835
BstDEI CTNAG 3 cut(s) 456, 585, 1000
BstDSI CCRYGG 1 cut(s) 33
BstENI CCTNNNNNAGG 1 cut(s) 981
BstF5I GGATG 5 cut(s) 43, 202, 289, 910, 966
BstKTI GATC 1 cut(s) 676
BstMAI GTCTC 3 cut(s) 657, 1129, 1141
BstMBI GATC 1 cut(s) 673
BstMWI GCNNNNNNNGC 5 cut(s) 248, 743, 798, 843, 1056
BstNI CCWGG 2 cut(s) 17, 824
BstNSI RCATGY 2 cut(s) 230, 934
BstPAI GACNNNNGTC 1 cut(s) 495
BstSCI CCNGG 4 cut(s) 15, 216, 822, 1107
BstSLI GKGCMC 1 cut(s) 11
BstV1I GCAGC 3 cut(s) 546, 1059, 1116
BstV2I GAAGAC 5 cut(s) 49, 183, 564, 695, 960
BsuI GTATCC 1 cut(s) 706
BsuRI GGCC 4 cut(s) 294, 806, 940, 987
BtgI CCRYGG 1 cut(s) 33
BtrI CACGTC 1 cut(s) 6
BtsCI GGATG 5 cut(s) 43, 202, 289, 910, 966
BtsI GCAGTG 5 cut(s) 331, 544, 623, 704, 744
BtsIMutI CAGTG 7 cut(s) 187, 331, 422, 544, 623, 704, 744
BveI ACCTGC 1 cut(s) 20
Cac8I GCNNGC 4 cut(s) 228, 614, 744, 835
CaiI CAGNNNCTG 1 cut(s) 971
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 2 cut(s) 490, 725
Csp6I GTAC 2 cut(s) 318, 812
CspAI ACCGGT 1 cut(s) 131
CspCI CAANNNNNGTGG 2 cut(s) 1142, 1177
CviAII CATG 6 cut(s) 34, 227, 262, 361, 590, 931
CviQI GTAC 2 cut(s) 318, 812
DdeI CTNAG 3 cut(s) 456, 585, 1000
DpnI GATC 1 cut(s) 675
DpnII GATC 1 cut(s) 673
DraIII CACNNNGTG 1 cut(s) 899
DriI GACNNNNNGTC 2 cut(s) 568, 961
EaeI YGGCCR 1 cut(s) 292
Eam1104I CTCTTC 1 cut(s) 1038
Eam1105I GACNNNNNGTC 2 cut(s) 568, 961
EarI CTCTTC 1 cut(s) 1038
Eco130I CCWWGG 1 cut(s) 33
Eco147I AGGCCT 3 cut(s) 806, 940, 987
Eco47I GGWCC 2 cut(s) 490, 725
Eco57I CTGAAG 1 cut(s) 117
Eco88I CYCGRG 2 cut(s) 244, 1132
EcoNI CCTNNNNNAGG 1 cut(s) 981
EcoRII CCWGG 2 cut(s) 15, 822
EcoT14I CCWWGG 1 cut(s) 33
EcoT22I ATGCAT 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 6 cut(s) 37, 230, 265, 364, 593, 934
FatI CATG 6 cut(s) 33, 226, 261, 360, 589, 930
FbaI TGATCA 1 cut(s) 673
Fnu4HI GCNGC 4 cut(s) 535, 793, 1048, 1105
FokI GGATG 5 cut(s) 50, 189, 296, 897, 973
Fsp4HI GCNGC 4 cut(s) 535, 793, 1048, 1105
FspBI CTAG 1 cut(s) 1056
GluI GCNGC 4 cut(s) 535, 793, 1048, 1105
GsuI CTGGAG 1 cut(s) 681
HaeIII GGCC 4 cut(s) 294, 806, 940, 987
HapII CCGG 5 cut(s) 132, 217, 235, 917, 1109
Hin1II CATG 6 cut(s) 37, 230, 265, 364, 593, 934
HinfI GANTC 7 cut(s) 29, 275, 518, 542, 563, 569, 944
HpaII CCGG 5 cut(s) 132, 217, 235, 917, 1109
HphI GGTGA 2 cut(s) 856, 1177
Hpy166II GTNNAC 2 cut(s) 9, 70
Hpy188I TCNGA 8 cut(s) 97, 523, 568, 700, 952, 973, 1093, 1193
Hpy188III TCNNGA 9 cut(s) 206, 235, 246, 398, 458, 560, 660, 917, 1002
Hpy8I GTNNAC 2 cut(s) 9, 70
HpyAV CCTTC 4 cut(s) 88, 109, 265, 404
HpyCH4III ACNGT 4 cut(s) 182, 482, 596, 694
HpyCH4IV ACGT 2 cut(s) 5, 606
HpyCH4V TGCA 7 cut(s) 9, 226, 324, 435, 510, 833, 902
HpyF10VI GCNNNNNNNGC 5 cut(s) 248, 743, 798, 843, 1056
HpyF3I CTNAG 3 cut(s) 456, 585, 1000
HpySE526I ACGT 2 cut(s) 5, 606
Hsp92II CATG 6 cut(s) 37, 230, 265, 364, 593, 934
Kpn2I TCCGGA 2 cut(s) 234, 916
Ksp22I TGATCA 1 cut(s) 673
Kzo9I GATC 1 cut(s) 673
LmnI GCTCC 1 cut(s) 1064
Lsp1109I GCAGC 3 cut(s) 546, 1059, 1116
LweI GCATC 3 cut(s) 820, 977, 1158
MaeI CTAG 1 cut(s) 1056
MaeII ACGT 2 cut(s) 5, 606
MaeIII GTNAC 5 cut(s) 257, 326, 596, 818, 889
MalI GATC 1 cut(s) 675
MboI GATC 1 cut(s) 673
MboII GAAGA 8 cut(s) 49, 188, 564, 649, 656, 700, 965, 1025
MfeI CAATTG 2 cut(s) 546, 777
MhlI GDGCHC 1 cut(s) 11
MlsI TGGCCA 1 cut(s) 294
MluCI AATT 7 cut(s) 163, 371, 409, 546, 777, 1139, 1187
MluNI TGGCCA 1 cut(s) 294
MlyI GAGTC 3 cut(s) 512, 557, 578
MnlI CCTC 8 cut(s) 178, 253, 328, 817, 877, 924, 998, 1099
Mox20I TGGCCA 1 cut(s) 294
Mph1103I ATGCAT 1 cut(s) 228
MroI TCCGGA 2 cut(s) 234, 916
MscI TGGCCA 1 cut(s) 294
MseI TTAA 1 cut(s) 423
MslI CAYNNNNRTG 2 cut(s) 207, 594
Msp20I TGGCCA 1 cut(s) 294
MspI CCGG 5 cut(s) 132, 217, 235, 917, 1109
MspR9I CCNGG 4 cut(s) 17, 218, 824, 1109
MunI CAATTG 2 cut(s) 546, 777
Mva1269I GAATGC 1 cut(s) 43
MvaI CCWGG 2 cut(s) 17, 824
MwoI GCNNNNNNNGC 5 cut(s) 248, 743, 798, 843, 1056
NciI CCSGG 2 cut(s) 218, 1109
NcoI CCATGG 1 cut(s) 33
NdeII GATC 1 cut(s) 673
NlaIII CATG 6 cut(s) 37, 230, 265, 364, 593, 934
NlaIV GGNNCC 3 cut(s) 192, 625, 726
NmuCI GTSAC 3 cut(s) 326, 596, 818
NsiI ATGCAT 1 cut(s) 228
NspI RCATGY 2 cut(s) 230, 934
PaeI GCATGC 1 cut(s) 230
PaeR7I CTCGAG 1 cut(s) 244
PaqCI CACCTGC 1 cut(s) 20
PceI AGGCCT 3 cut(s) 806, 940, 987
PciI ACATGT 1 cut(s) 930
PctI GAATGC 1 cut(s) 43
PfeI GAWTC 4 cut(s) 29, 275, 542, 944
PflFI GACNNNGTC 1 cut(s) 723
PinAI ACCGGT 1 cut(s) 131
PkrI GCNGC 4 cut(s) 536, 794, 1049, 1106
PleI GAGTC 3 cut(s) 512, 557, 577
PpsI GAGTC 3 cut(s) 512, 557, 577
PscI ACATGT 1 cut(s) 930
PshAI GACNNNNGTC 1 cut(s) 495
Psp6I CCWGG 2 cut(s) 15, 822
PspGI CCWGG 2 cut(s) 15, 822
PspN4I GGNNCC 3 cut(s) 192, 625, 726
PspPI GGNCC 2 cut(s) 490, 725
PstNI CAGNNNCTG 1 cut(s) 971
PsyI GACNNNGTC 1 cut(s) 723
RsaI GTAC 2 cut(s) 319, 813
RsaNI GTAC 2 cut(s) 318, 812
RseI CAYNNNNRTG 2 cut(s) 207, 594
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 4 cut(s) 535, 793, 1048, 1105
Sau3AI GATC 1 cut(s) 673
Sau96I GGNCC 2 cut(s) 490, 725
SchI GAGTC 3 cut(s) 512, 557, 578
ScrFI CCNGG 4 cut(s) 17, 218, 824, 1109
SduI GDGCHC 1 cut(s) 11
SfaNI GCATC 3 cut(s) 820, 977, 1158
Sfr274I CTCGAG 1 cut(s) 244
SinI GGWCC 2 cut(s) 490, 725
SlaI CTCGAG 1 cut(s) 244
SmiMI CAYNNNNRTG 2 cut(s) 207, 594
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
SphI GCATGC 1 cut(s) 230
Sse9I AATT 7 cut(s) 163, 371, 409, 546, 777, 1139, 1187
SseBI AGGCCT 3 cut(s) 806, 940, 987
SsiI CCGC 4 cut(s) 53, 793, 1020, 1156
SspI AATATT 1 cut(s) 467
SspMI CTAG 1 cut(s) 1056
StuI AGGCCT 3 cut(s) 806, 940, 987
StyD4I CCNGG 4 cut(s) 15, 216, 822, 1107
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 4 cut(s) 182, 482, 596, 694
TaiI ACGT 2 cut(s) 8, 609
TaqI TCGA 1 cut(s) 245
TaqII GACCGA 1 cut(s) 1026
TasI AATT 7 cut(s) 163, 371, 409, 546, 777, 1139, 1187
TatI WGTACW 1 cut(s) 317
TauI GCSGC 1 cut(s) 795
TfiI GAWTC 4 cut(s) 29, 275, 542, 944
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 7 cut(s) 187, 331, 422, 544, 623, 711, 744
TseFI GTSAC 3 cut(s) 326, 596, 818
TseI GCWGC 3 cut(s) 534, 1047, 1104
Tsp45I GTSAC 3 cut(s) 326, 596, 818
TspDTI ATGAA 3 cut(s) 145, 384, 663
TspRI CASTG 7 cut(s) 187, 331, 422, 544, 623, 711, 744
Tth111I GACNNNGTC 1 cut(s) 723
VneI GTGCAC 1 cut(s) 7
VpaK11BI GGWCC 2 cut(s) 490, 725
XagI CCTNNNNNAGG 1 cut(s) 981
XapI RAATTY 1 cut(s) 1187
XceI RCATGY 2 cut(s) 230, 934
XhoI CTCGAG 1 cut(s) 244
XspI CTAG 1 cut(s) 1056
Zsp2I ATGCAT 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.