AT2G14378

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002420
Physical Location & Seq
Reverse (-)
6104752 .. 6105252
501 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G14378.1

Sequence Viewer

Length: 363 bp
ATGGGAAACAATTCAAGAGCTATTTTCTCTTTATTCTTAGTTGTAGCCTTATGTGCTGCAATTTTAATCACTCCCGGAATAGCTCATGATGAACAACCACCGCCCCGCTCACAATTTCCACCGGATTTTCCTATTGATGTGGAAAAATGTTGGTCATCACTTTTCAATACTCAAGGATGCGTATTCGAACTTTTGAAGTCAGTTTTTTCTGGTCGGTTTGGAGATGTTGGAGTTGCATGTTGCAAAGCATTCTCGACCGTAGATGCTAACTGTTGGCCTCATATGTTCCCGCTTAACCCGTTCTTTCCACCTCTGCTTAAGGACAACTGTGCGCACATCGTACCCAATTCCCCCTCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

120

Amino Acids

13.14

Weight (kDa)

6.24

Isoelectric Point (pI)

43.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 49 - 110 2.6e-14 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 333
AccBSI CCGCTC 1 cut(s) 108
AciI CCGC 3 cut(s) 101, 106, 290
AfaI GTAC 1 cut(s) 342
AflII CTTAAG 1 cut(s) 317
AgsI TTSAA 3 cut(s) 15, 166, 196
AluBI AGCT 2 cut(s) 20, 83
AluI AGCT 2 cut(s) 20, 83
AoxI GGCC 1 cut(s) 275
ApeKI GCWGC 1 cut(s) 56
Asp700I GAANNNNTTC 1 cut(s) 10
AspLEI GCGC 1 cut(s) 334
AsuC2I CCSGG 1 cut(s) 75
AsuII TTCGAA 1 cut(s) 186
BbvI GCAGC 1 cut(s) 43
BcnI CCSGG 1 cut(s) 75
BfrI CTTAAG 1 cut(s) 317
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 75
BmsI GCATC 2 cut(s) 167, 253
Bpu14I TTCGAA 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 156
BpuMI CCSGG 1 cut(s) 75
BsaWI WCCGGW 1 cut(s) 121
BseGI GGATG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 43
Bsh1285I CGRYCG 1 cut(s) 258
BshFI GGCC 1 cut(s) 277
BsiEI CGRYCG 1 cut(s) 258
BsiSI CCGG 2 cut(s) 75, 122
BsmI GAATGC 1 cut(s) 248
BsnI GGCC 1 cut(s) 277
Bsp119I TTCGAA 1 cut(s) 186
BspACI CCGC 3 cut(s) 101, 106, 290
BspANI GGCC 1 cut(s) 277
BspHI TCATGA 1 cut(s) 85
BspT104I TTCGAA 1 cut(s) 186
BspTI CTTAAG 1 cut(s) 317
BsrBI CCGCTC 1 cut(s) 108
Bst4CI ACNGT 3 cut(s) 259, 272, 329
BstAFI CTTAAG 1 cut(s) 317
BstBI TTCGAA 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 37
BstF5I GGATG 1 cut(s) 182
BstHHI GCGC 1 cut(s) 334
BstMCI CGRYCG 1 cut(s) 258
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 73
BstV1I GCAGC 1 cut(s) 43
BsuRI GGCC 1 cut(s) 277
BtsCI GGATG 1 cut(s) 182
CciI TCATGA 1 cut(s) 85
CfoI GCGC 1 cut(s) 334
Csp6I GTAC 1 cut(s) 341
CviAII CATG 2 cut(s) 86, 237
CviJI RGCY 4 cut(s) 20, 47, 83, 277
CviKI_1 RGCY 4 cut(s) 20, 47, 83, 277
CviQI GTAC 1 cut(s) 341
DdeI CTNAG 1 cut(s) 37
FaeI CATG 2 cut(s) 89, 240
FaiI YATR 5 cut(s) 52, 87, 238, 282, 284
FatI CATG 2 cut(s) 85, 236
FauI CCCGC 2 cut(s) 113, 297
FauNDI CATATG 1 cut(s) 282
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 1 cut(s) 189
Fsp4HI GCNGC 1 cut(s) 57
FspAI RTGCGCAY 1 cut(s) 333
FspI TGCGCA 1 cut(s) 333
GlaI GCGC 1 cut(s) 333
GluI GCNGC 1 cut(s) 57
HaeIII GGCC 1 cut(s) 277
HapII CCGG 2 cut(s) 75, 122
HhaI GCGC 1 cut(s) 334
Hin1II CATG 2 cut(s) 89, 240
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HpaII CCGG 2 cut(s) 75, 122
Hpy188III TCNNGA 3 cut(s) 15, 86, 253
HpyCH4III ACNGT 3 cut(s) 259, 272, 329
HpyCH4V TGCA 3 cut(s) 59, 236, 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 1 cut(s) 37
Hsp92II CATG 2 cut(s) 89, 240
HspAI GCGC 1 cut(s) 332
LpnPI CCDG 3 cut(s) 88, 135, 195
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 2 cut(s) 167, 253
MbiI CCGCTC 1 cut(s) 108
MluCI AATT 4 cut(s) 10, 60, 113, 346
MmeI TCCRAC 1 cut(s) 208
MnlI CCTC 2 cut(s) 288, 321
MroXI GAANNNNTTC 1 cut(s) 10
MseI TTAA 3 cut(s) 65, 294, 318
MspCI CTTAAG 1 cut(s) 317
MspI CCGG 2 cut(s) 75, 122
MspR9I CCNGG 1 cut(s) 75
Mva1269I GAATGC 1 cut(s) 248
MwoI GCNNNNNNNGC 1 cut(s) 53
NciI CCSGG 1 cut(s) 75
NdeI CATATG 1 cut(s) 282
NlaIII CATG 2 cut(s) 89, 240
NsbI TGCGCA 1 cut(s) 333
NspI RCATGY 1 cut(s) 240
NspV TTCGAA 1 cut(s) 186
PagI TCATGA 1 cut(s) 85
PctI GAATGC 1 cut(s) 248
PdmI GAANNNNTTC 1 cut(s) 10
PfoI TCCNGGA 1 cut(s) 73
PkrI GCNGC 1 cut(s) 58
RsaI GTAC 1 cut(s) 342
RsaNI GTAC 1 cut(s) 341
SaqAI TTAA 3 cut(s) 65, 294, 318
SatI GCNGC 1 cut(s) 57
ScrFI CCNGG 1 cut(s) 75
SetI ASST 3 cut(s) 22, 85, 313
SfaNI GCATC 2 cut(s) 167, 253
SfuI TTCGAA 1 cut(s) 186
SmlI CTYRAG 2 cut(s) 171, 317
SmoI CTYRAG 2 cut(s) 171, 317
Sse9I AATT 4 cut(s) 10, 60, 113, 346
SsiI CCGC 3 cut(s) 101, 106, 290
StyD4I CCNGG 1 cut(s) 73
TaaI ACNGT 3 cut(s) 259, 272, 329
TaqI TCGA 2 cut(s) 186, 254
TasI AATT 4 cut(s) 10, 60, 113, 346
Tru1I TTAA 3 cut(s) 65, 294, 318
Tru9I TTAA 3 cut(s) 65, 294, 318
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 105
Vha464I CTTAAG 1 cut(s) 317
XceI RCATGY 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.