pycom09g08120

lipoprotein transporter activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0002420
Physical Location & Seq
Forward (+)
6245033 .. 6245464
432 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g08120.1

Sequence Viewer

Length: 378 bp
ATGTCTAGACAAGCTCAAGCACTACTTTCACTACTCCTACTGGCAACATGTGCAGCAACCGGTGCGGATGTGCCACCACCGCCCTTCCCCCCAGGCCTATTCCCTCCTGGGATTCCAGGGCTTTCTCCGCCGGGAACCCCGGGTGAGGTACCAAAGTGCTGTTCTTCACTTCAGAACATTCCAGGGTGTGCATCGGAAATTTATACCACAATCTTGACCGGTAAATTTGCACTAGGCCCTGCTTGTTGCAAGGCTTTCATCGAAGTTGATCAGAATTGCTTGCCGAAGTTGTTCCCATTGTTTCCTTCCATTCCTACATTCCTCAAGAGCAGCTGTGCTACTGCTGCTGCTCCTAAAGCAGCTGGATCAAGGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

126

Amino Acids

12.74

Weight (kDa)

8.47

Isoelectric Point (pI)

65.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 52 - 105 2.3e-12 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 148
AccB1I GGYRCC 1 cut(s) 148
AciI CCGC 3 cut(s) 65, 80, 128
AclWI GGATC 1 cut(s) 373
AcsI RAATTY 2 cut(s) 198, 224
AcuI CTGAAG 1 cut(s) 155
AfaI GTAC 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 145
AflIII ACRYGT 1 cut(s) 47
AgeI ACCGGT 2 cut(s) 59, 218
AjnI CCWGG 4 cut(s) 91, 106, 115, 181
AjuI GAANNNNNNNTTGG 2 cut(s) 145, 177
AluBI AGCT 3 cut(s) 14, 333, 362
AluI AGCT 3 cut(s) 14, 333, 362
AlwI GGATC 1 cut(s) 373
Ama87I CYCGRG 1 cut(s) 139
AoxI GGCC 2 cut(s) 94, 235
ApeKI GCWGC 5 cut(s) 53, 330, 344, 347, 359
ApoI RAATTY 2 cut(s) 198, 224
AsiGI ACCGGT 2 cut(s) 59, 218
Asp700I GAANNNNTTC 1 cut(s) 290
Asp718I GGTACC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 236
AsuC2I CCSGG 3 cut(s) 132, 140, 141
AsuHPI GGTGA 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 139
BaeI ACNNNNGTAYC 2 cut(s) 140, 173
BanI GGYRCC 1 cut(s) 148
BbvI GCAGC 5 cut(s) 65, 331, 334, 342, 371
BciT130I CCWGG 4 cut(s) 93, 108, 117, 183
BclI TGATCA 1 cut(s) 268
BcnI CCSGG 3 cut(s) 132, 140, 141
BfaI CTAG 2 cut(s) 6, 233
BisI GCNGC 5 cut(s) 54, 331, 345, 348, 360
BlsI GCNGC 5 cut(s) 55, 332, 346, 349, 361
Bme1390I CCNGG 7 cut(s) 93, 108, 117, 132, 140, 141, 183
BmeT110I CYCGRG 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 2 cut(s) 136, 150
BmrFI CCNGG 7 cut(s) 93, 108, 117, 132, 140, 141, 183
BmsI GCATC 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 308
BpuMI CCSGG 3 cut(s) 132, 140, 141
BsaJI CCNNGG 6 cut(s) 91, 107, 116, 138, 139, 182
BsaWI WCCGGW 2 cut(s) 59, 218
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse118I RCCGGY 2 cut(s) 59, 218
Bse1I ACTGG 1 cut(s) 45
BseBI CCWGG 4 cut(s) 93, 108, 117, 183
BseDI CCNNGG 6 cut(s) 91, 107, 116, 138, 139, 182
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 145
BseNI ACTGG 1 cut(s) 45
BseXI GCAGC 5 cut(s) 65, 331, 334, 342, 371
BsgI GTGCAG 1 cut(s) 72
BshFI GGCC 2 cut(s) 96, 237
BshNI GGYRCC 1 cut(s) 148
BshTI ACCGGT 2 cut(s) 59, 218
BsiHKCI CYCGRG 1 cut(s) 139
BsiSI CCGG 4 cut(s) 60, 131, 140, 219
BslI CCNNNNNNNGG 1 cut(s) 145
BsnI GGCC 2 cut(s) 96, 237
BsoBI CYCGRG 1 cut(s) 139
Bsp143I GATC 2 cut(s) 268, 365
BspACI CCGC 3 cut(s) 65, 80, 128
BspANI GGCC 2 cut(s) 96, 237
BspLI GGNNCC 2 cut(s) 136, 150
BspPI GGATC 1 cut(s) 373
BspT107I GGYRCC 1 cut(s) 148
BsrFI RCCGGY 2 cut(s) 59, 218
BsrI ACTGG 1 cut(s) 45
BssAI RCCGGY 2 cut(s) 59, 218
BssECI CCNNGG 6 cut(s) 91, 107, 116, 138, 139, 182
BssMI GATC 2 cut(s) 268, 365
Bst2UI CCWGG 4 cut(s) 93, 108, 117, 183
BstAPI GCANNNNNTGC 2 cut(s) 50, 62
BstC8I GCNNGC 1 cut(s) 281
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 2 cut(s) 271, 368
BstMBI GATC 2 cut(s) 268, 365
BstMWI GCNNNNNNNGC 6 cut(s) 50, 62, 79, 127, 344, 356
BstNI CCWGG 4 cut(s) 93, 108, 117, 183
BstNSI RCATGY 1 cut(s) 51
BstSCI CCNGG 7 cut(s) 91, 106, 115, 130, 138, 139, 181
BstV1I GCAGC 5 cut(s) 65, 331, 334, 342, 371
BsuRI GGCC 2 cut(s) 96, 237
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 281
Cfr10I RCCGGY 2 cut(s) 59, 218
Cfr13I GGNCC 1 cut(s) 236
Cfr9I CCCGGG 1 cut(s) 139
Csp6I GTAC 1 cut(s) 149
CspAI ACCGGT 2 cut(s) 59, 218
CviAII CATG 1 cut(s) 48
CviJI RGCY 7 cut(s) 14, 96, 121, 237, 254, 333, 362
CviKI_1 RGCY 7 cut(s) 14, 96, 121, 237, 254, 333, 362
CviQI GTAC 1 cut(s) 149
DpnI GATC 2 cut(s) 270, 367
DpnII GATC 2 cut(s) 268, 365
EciI GGCGGA 1 cut(s) 117
Eco147I AGGCCT 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 155
Eco88I CYCGRG 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 236
EcoRII CCWGG 4 cut(s) 91, 106, 115, 181
FaeI CATG 1 cut(s) 51
FaiI YATR 2 cut(s) 49, 204
FalI AAGNNNNNCTT 2 cut(s) 9, 41
FatI CATG 1 cut(s) 47
FbaI TGATCA 1 cut(s) 268
Fnu4HI GCNGC 5 cut(s) 54, 331, 345, 348, 360
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 5 cut(s) 54, 331, 345, 348, 360
FspBI CTAG 2 cut(s) 6, 233
GluI GCNGC 5 cut(s) 54, 331, 345, 348, 360
HaeIII GGCC 2 cut(s) 96, 237
HapII CCGG 4 cut(s) 60, 131, 140, 219
Hin1II CATG 1 cut(s) 51
HinfI GANTC 1 cut(s) 112
HpaII CCGG 4 cut(s) 60, 131, 140, 219
HphI GGTGA 1 cut(s) 155
Hpy188I TCNGA 3 cut(s) 174, 196, 273
Hpy188III TCNNGA 3 cut(s) 6, 214, 325
HpyAV CCTTC 2 cut(s) 94, 315
HpyCH4V TGCA 4 cut(s) 53, 191, 230, 249
HpyF10VI GCNNNNNNNGC 6 cut(s) 50, 62, 79, 127, 344, 356
Hsp92II CATG 1 cut(s) 51
KpnI GGTACC 1 cut(s) 152
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 2 cut(s) 268, 365
LmnI GCTCC 1 cut(s) 355
Lsp1109I GCAGC 5 cut(s) 65, 331, 334, 342, 371
LweI GCATC 1 cut(s) 200
MaeI CTAG 2 cut(s) 6, 233
MalI GATC 2 cut(s) 270, 367
MboI GATC 2 cut(s) 268, 365
MboII GAAGA 1 cut(s) 156
MluCI AATT 3 cut(s) 198, 224, 274
MnlI CCTC 3 cut(s) 114, 139, 332
MroXI GAANNNNTTC 1 cut(s) 290
MspA1I CMGCKG 2 cut(s) 333, 362
MspI CCGG 4 cut(s) 60, 131, 140, 219
MspR9I CCNGG 7 cut(s) 93, 108, 117, 132, 140, 141, 183
MvaI CCWGG 4 cut(s) 93, 108, 117, 183
MwoI GCNNNNNNNGC 6 cut(s) 50, 62, 79, 127, 344, 356
NciI CCSGG 3 cut(s) 132, 140, 141
NdeII GATC 2 cut(s) 268, 365
NlaIII CATG 1 cut(s) 51
NlaIV GGNNCC 2 cut(s) 136, 150
NspI RCATGY 1 cut(s) 51
PceI AGGCCT 1 cut(s) 96
PciI ACATGT 1 cut(s) 47
PdmI GAANNNNTTC 1 cut(s) 290
PfeI GAWTC 1 cut(s) 112
PinAI ACCGGT 2 cut(s) 59, 218
PkrI GCNGC 5 cut(s) 55, 332, 346, 349, 361
PscI ACATGT 1 cut(s) 47
Psp6I CCWGG 4 cut(s) 91, 106, 115, 181
PspGI CCWGG 4 cut(s) 91, 106, 115, 181
PspN4I GGNNCC 2 cut(s) 136, 150
PspPI GGNCC 1 cut(s) 236
PvuII CAGCTG 2 cut(s) 333, 362
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
SatI GCNGC 5 cut(s) 54, 331, 345, 348, 360
Sau3AI GATC 2 cut(s) 268, 365
Sau96I GGNCC 1 cut(s) 236
ScrFI CCNGG 7 cut(s) 93, 108, 117, 132, 140, 141, 183
SetI ASST 4 cut(s) 16, 150, 335, 364
SfaNI GCATC 1 cut(s) 200
SmaI CCCGGG 1 cut(s) 141
SmlI CTYRAG 2 cut(s) 15, 323
SmoI CTYRAG 2 cut(s) 15, 323
Sse9I AATT 3 cut(s) 198, 224, 274
SseBI AGGCCT 1 cut(s) 96
SsiI CCGC 3 cut(s) 65, 80, 128
SspMI CTAG 2 cut(s) 6, 233
StuI AGGCCT 1 cut(s) 96
StyD4I CCNGG 7 cut(s) 91, 106, 115, 130, 138, 139, 181
TaqI TCGA 1 cut(s) 261
TasI AATT 3 cut(s) 198, 224, 274
TfiI GAWTC 1 cut(s) 112
TseI GCWGC 5 cut(s) 53, 330, 344, 347, 359
TspDTI ATGAA 1 cut(s) 247
TspMI CCCGGG 1 cut(s) 139
XapI RAATTY 2 cut(s) 198, 224
XbaI TCTAGA 1 cut(s) 5
XceI RCATGY 1 cut(s) 51
XmaI CCCGGG 1 cut(s) 139
XmnI GAANNNNTTC 1 cut(s) 290
XspI CTAG 2 cut(s) 6, 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.