AT3G48675

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002420
Physical Location & Seq
Forward (+)
18034192 .. 18034551
360 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48675.1

Sequence Viewer

Length: 360 bp
ATGGAAAACAACTCAGGAGCTATTCTCTTTGTGATCTTAGCTATGACCATTGTTCTTCAAGTGAGGCCAGGGTTCTCTCAAGCACTCCCTACGATCCCCGGACTTTTCCCACCGGGTCTTCCTATTGATATCATAAAATGTTGGTCATCTCTCTTTAACGTCCAAGGATGTGTACAAGAAATCTACAAATCGATATTTTCTGGTCAGTTTGCTAGCATTGAAGCCCCATGTTGTAAAACGTTTTCAGCTATAGATACAAACTGTTGGCCACATATGTTTCCATTGAACCCATTCTTCCCTCCTATTCTCAAGAACAACTGCGAGCGTATTGCTACGACTCCATCATCAACACACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

119

Amino Acids

13.12

Weight (kDa)

7.6

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 46 - 107 7.6e-17 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 239
AclWI GGATC 1 cut(s) 88
AcoI YGGCCR 1 cut(s) 266
AfaI GTAC 1 cut(s) 174
AgsI TTSAA 3 cut(s) 59, 221, 286
AjnI CCWGG 1 cut(s) 67
AleI CACNNNNGTG 1 cut(s) 355
AluBI AGCT 3 cut(s) 20, 41, 248
AluI AGCT 3 cut(s) 20, 41, 248
AlwI GGATC 1 cut(s) 88
AoxI GGCC 2 cut(s) 65, 266
Asp700I GAANNNNTTC 1 cut(s) 290
AsuC2I CCSGG 2 cut(s) 99, 114
AsuNHI GCTAGC 1 cut(s) 212
BalI TGGCCA 1 cut(s) 268
BbsI GAAGAC 1 cut(s) 110
BccI CCATC 1 cut(s) 349
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BciT130I CCWGG 1 cut(s) 69
BcnI CCSGG 2 cut(s) 99, 114
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 249
Bme1390I CCNGG 3 cut(s) 69, 99, 114
BmrFI CCNGG 3 cut(s) 69, 99, 114
BmtI GCTAGC 1 cut(s) 216
BpiI GAAGAC 1 cut(s) 110
BplI GAGNNNNNCTC 2 cut(s) 9, 41
BpuEI CTTGAG 2 cut(s) 63, 293
BpuMI CCSGG 2 cut(s) 99, 114
Bsa29I ATCGAT 1 cut(s) 191
BsaJI CCNNGG 3 cut(s) 68, 97, 163
BseBI CCWGG 1 cut(s) 69
BseCI ATCGAT 1 cut(s) 191
BseDI CCNNGG 3 cut(s) 68, 97, 163
BseGI GGATG 1 cut(s) 173
BseMII CTCAG 1 cut(s) 27
BshFI GGCC 2 cut(s) 67, 268
BshVI ATCGAT 1 cut(s) 191
BsiSI CCGG 2 cut(s) 99, 113
BsnI GGCC 2 cut(s) 67, 268
Bsp1407I TGTACA 1 cut(s) 172
Bsp143I GATC 2 cut(s) 33, 93
BspANI GGCC 2 cut(s) 67, 268
BspCNI CTCAG 1 cut(s) 26
BspDI ATCGAT 1 cut(s) 191
BspOI GCTAGC 1 cut(s) 216
BspPI GGATC 1 cut(s) 88
BsrGI TGTACA 1 cut(s) 172
BssECI CCNNGG 3 cut(s) 68, 97, 163
BssMI GATC 2 cut(s) 33, 93
BssT1I CCWWGG 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 263
BstAUI TGTACA 1 cut(s) 172
BstC8I GCNNGC 2 cut(s) 214, 323
BstDEI CTNAG 2 cut(s) 13, 37
BstF5I GGATG 1 cut(s) 173
BstKTI GATC 2 cut(s) 36, 96
BstMBI GATC 2 cut(s) 33, 93
BstNI CCWGG 1 cut(s) 69
BstSCI CCNGG 3 cut(s) 67, 97, 112
BstSFI CTRYAG 1 cut(s) 249
BstV2I GAAGAC 1 cut(s) 110
Bsu15I ATCGAT 1 cut(s) 191
BsuRI GGCC 2 cut(s) 67, 268
BsuTUI ATCGAT 1 cut(s) 191
BtsCI GGATG 1 cut(s) 173
Cac8I GCNNGC 2 cut(s) 214, 323
ClaI ATCGAT 1 cut(s) 191
Csp6I GTAC 1 cut(s) 173
CviAII CATG 1 cut(s) 228
CviJI RGCY 6 cut(s) 20, 41, 67, 224, 248, 268
CviKI_1 RGCY 6 cut(s) 20, 41, 67, 224, 248, 268
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 2 cut(s) 13, 37
DpnI GATC 2 cut(s) 35, 95
DpnII GATC 2 cut(s) 33, 93
EaeI YGGCCR 1 cut(s) 266
Eco130I CCWWGG 1 cut(s) 163
Eco32I GATATC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 67
EcoRV GATATC 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 1 cut(s) 231
FaiI YATR 6 cut(s) 44, 134, 229, 251, 273, 275
FatI CATG 1 cut(s) 227
FauNDI CATATG 1 cut(s) 273
FokI GGATG 1 cut(s) 180
FspBI CTAG 1 cut(s) 213
HaeIII GGCC 2 cut(s) 67, 268
HapII CCGG 2 cut(s) 99, 113
Hin1II CATG 1 cut(s) 231
HinfI GANTC 1 cut(s) 337
HpaII CCGG 2 cut(s) 99, 113
Hpy166II GTNNAC 1 cut(s) 173
Hpy188III TCNNGA 2 cut(s) 15, 310
Hpy8I GTNNAC 1 cut(s) 173
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4IV ACGT 2 cut(s) 159, 239
HpyF3I CTNAG 2 cut(s) 13, 37
HpySE526I ACGT 2 cut(s) 159, 239
Hsp92II CATG 1 cut(s) 231
Kzo9I GATC 2 cut(s) 33, 93
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 5 cut(s) 54, 81, 112, 126, 186
MaeI CTAG 1 cut(s) 213
MaeII ACGT 2 cut(s) 159, 239
MalI GATC 2 cut(s) 35, 95
MboI GATC 2 cut(s) 33, 93
MboII GAAGA 3 cut(s) 47, 110, 286
MlsI TGGCCA 1 cut(s) 268
MluNI TGGCCA 1 cut(s) 268
MlyI GAGTC 1 cut(s) 331
MnlI CCTC 2 cut(s) 57, 309
Mox20I TGGCCA 1 cut(s) 268
MroXI GAANNNNTTC 1 cut(s) 290
MscI TGGCCA 1 cut(s) 268
MseI TTAA 1 cut(s) 156
MslI CAYNNNNRTG 1 cut(s) 355
Msp20I TGGCCA 1 cut(s) 268
MspI CCGG 2 cut(s) 99, 113
MspR9I CCNGG 3 cut(s) 69, 99, 114
MvaI CCWGG 1 cut(s) 69
NciI CCSGG 2 cut(s) 99, 114
NdeI CATATG 1 cut(s) 273
NdeII GATC 2 cut(s) 33, 93
NheI GCTAGC 1 cut(s) 212
NlaIII CATG 1 cut(s) 231
OliI CACNNNNGTG 1 cut(s) 355
PdmI GAANNNNTTC 1 cut(s) 290
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
Psp1406I AACGTT 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
RseI CAYNNNNRTG 1 cut(s) 355
SaqAI TTAA 1 cut(s) 156
Sau3AI GATC 2 cut(s) 33, 93
SchI GAGTC 1 cut(s) 331
ScrFI CCNGG 3 cut(s) 69, 99, 114
SetI ASST 5 cut(s) 22, 43, 162, 242, 250
SfcI CTRYAG 1 cut(s) 249
SmiMI CAYNNNNRTG 1 cut(s) 355
SmlI CTYRAG 2 cut(s) 78, 308
SmoI CTYRAG 2 cut(s) 78, 308
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 3 cut(s) 67, 97, 112
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 1 cut(s) 263
TaiI ACGT 2 cut(s) 162, 242
TaqI TCGA 1 cut(s) 191
TatI WGTACW 1 cut(s) 172
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
XmnI GAANNNNTTC 1 cut(s) 290
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.