RchiOBHm_Chr1g0323971

Egg cell-secreted protein 1.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002420
Physical Location & Seq
Forward (+)
11483382 .. 11483735
354 bp
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UTR
Exon/CDS
Intron
PRQ55382

Sequence Viewer

Length: 354 bp
ATGTCTAGAGTAACTCCGGCAATATTCTCACTACTCCTAATGGCAATATATGCTGCAACTGCTCTAGCGGAAGTGCCAACCTCACCATCACCTCCTCCGATTGGCATATTGCCGAACCCGAATGAAGTAGCAAAATGTTGGTCTTCGCTTGAAAATATTCAAGGGTGTATATGGGAAATTTATACCTCGGTGTTTTCTGGTAACCTATCTGGAATAGGCTCTGCTTGTTGCAAGGCATTCATTGGAATTGAAGAAAGCTGCTGGCCAAATATGTTCCCCTCAAACCCCTTTTTTCCTCCATTGCTTGGAAGCACTTGTAGTGCCAGAAAGGCAACACCTCCGGGAGGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

117

Amino Acids

12.32

Weight (kDa)

5.15

Isoelectric Point (pI)

68.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 45 - 106 2.7e-15 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 305
AciI CCGC 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 263
AcsI RAATTY 1 cut(s) 177
AfiI CCNNNNNNNGG 3 cut(s) 101, 305, 344
AgsI TTSAA 3 cut(s) 152, 161, 251
AluBI AGCT 1 cut(s) 258
AluI AGCT 1 cut(s) 258
AoxI GGCC 1 cut(s) 263
ApeKI GCWGC 2 cut(s) 53, 258
ApoI RAATTY 1 cut(s) 177
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
Asp700I GAANNNNTTC 1 cut(s) 156
AsuC2I CCSGG 1 cut(s) 342
AsuHPI GGTGA 2 cut(s) 75, 81
BalI TGGCCA 1 cut(s) 265
BbsI GAAGAC 1 cut(s) 135
BbvI GCAGC 2 cut(s) 40, 245
BccI CCATC 1 cut(s) 94
BcnI CCSGG 1 cut(s) 342
BfaI CTAG 2 cut(s) 6, 65
BglI GCCNNNNNGGC 1 cut(s) 329
BisI GCNGC 2 cut(s) 54, 259
BlsI GCNGC 2 cut(s) 55, 260
Bme1390I CCNGG 1 cut(s) 342
BmrFI CCNGG 1 cut(s) 342
BpiI GAAGAC 1 cut(s) 135
BpuMI CCSGG 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 3 cut(s) 101, 305, 344
Bse3DI GCAATG 1 cut(s) 299
BseDI CCNNGG 1 cut(s) 186
BseLI CCNNNNNNNGG 3 cut(s) 101, 305, 344
BseMI GCAATG 1 cut(s) 299
BseRI GAGGAG 1 cut(s) 84
BseXI GCAGC 2 cut(s) 40, 245
BshFI GGCC 1 cut(s) 265
BsiSI CCGG 2 cut(s) 17, 341
BslI CCNNNNNNNGG 3 cut(s) 101, 305, 344
BsmI GAATGC 1 cut(s) 236
BsnI GGCC 1 cut(s) 265
BspACI CCGC 1 cut(s) 68
BspANI GGCC 1 cut(s) 265
BsrDI GCAATG 1 cut(s) 299
BssECI CCNNGG 1 cut(s) 186
BstAPI GCANNNNNTGC 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 263
BstEII GGTNACC 1 cut(s) 200
BstENI CCTNNNNNAGG 1 cut(s) 342
BstMWI GCNNNNNNNGC 3 cut(s) 50, 59, 329
BstPI GGTNACC 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 340
BstV1I GCAGC 2 cut(s) 40, 245
BstV2I GAAGAC 1 cut(s) 135
BsuRI GGCC 1 cut(s) 265
Cac8I GCNNGC 1 cut(s) 263
CviJI RGCY 3 cut(s) 219, 258, 265
CviKI_1 RGCY 3 cut(s) 219, 258, 265
EaeI YGGCCR 1 cut(s) 263
Eco91I GGTNACC 1 cut(s) 200
EcoNI CCTNNNNNAGG 1 cut(s) 342
EcoO65I GGTNACC 1 cut(s) 200
FaiI YATR 7 cut(s) 49, 51, 107, 170, 172, 183, 272
Fnu4HI GCNGC 2 cut(s) 54, 259
Fsp4HI GCNGC 2 cut(s) 54, 259
FspBI CTAG 2 cut(s) 6, 65
GluI GCNGC 2 cut(s) 54, 259
HaeIII GGCC 1 cut(s) 265
HapII CCGG 2 cut(s) 17, 341
HpaII CCGG 2 cut(s) 17, 341
HphI GGTGA 2 cut(s) 75, 81
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 2 cut(s) 6, 210
HpyCH4V TGCA 2 cut(s) 56, 231
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 59, 329
LpnPI CCDG 5 cut(s) 30, 183, 195, 247, 337
Lsp1109I GCAGC 2 cut(s) 40, 245
MaeI CTAG 2 cut(s) 6, 65
MaeIII GTNAC 2 cut(s) 10, 200
MboII GAAGA 2 cut(s) 135, 263
MlsI TGGCCA 1 cut(s) 265
MluCI AATT 2 cut(s) 177, 246
MluNI TGGCCA 1 cut(s) 265
MnlI CCTC 8 cut(s) 91, 102, 105, 196, 289, 306, 338, 348
Mox20I TGGCCA 1 cut(s) 265
MroXI GAANNNNTTC 1 cut(s) 156
MscI TGGCCA 1 cut(s) 265
Msp20I TGGCCA 1 cut(s) 265
MspI CCGG 2 cut(s) 17, 341
MspR9I CCNGG 1 cut(s) 342
Mva1269I GAATGC 1 cut(s) 236
MwoI GCNNNNNNNGC 3 cut(s) 50, 59, 329
NciI CCSGG 1 cut(s) 342
PctI GAATGC 1 cut(s) 236
PdmI GAANNNNTTC 1 cut(s) 156
PflMI CCANNNNNTGG 1 cut(s) 305
PfoI TCCNGGA 1 cut(s) 340
PkrI GCNGC 2 cut(s) 55, 260
PspEI GGTNACC 1 cut(s) 200
SatI GCNGC 2 cut(s) 54, 259
ScrFI CCNGG 1 cut(s) 342
SetI ASST 6 cut(s) 83, 94, 188, 207, 260, 340
Sse9I AATT 2 cut(s) 177, 246
SsiI CCGC 1 cut(s) 68
SspI AATATT 2 cut(s) 24, 157
SspMI CTAG 2 cut(s) 6, 65
StyD4I CCNGG 1 cut(s) 340
TasI AATT 2 cut(s) 177, 246
TseI GCWGC 2 cut(s) 53, 258
TspDTI ATGAA 2 cut(s) 138, 229
Van91I CCANNNNNTGG 1 cut(s) 305
XagI CCTNNNNNAGG 1 cut(s) 342
XapI RAATTY 1 cut(s) 177
XbaI TCTAGA 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 2 cut(s) 6, 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.