Rroxscaffold_4G00326030

Egg cell-secreted protein 1.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0002420
Physical Location & Seq
Reverse (-)
58069780 .. 58070133
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00326030.1

Sequence Viewer

Length: 354 bp
ATGTCTAGAGCAACTCCGGCAATATTCTCACTACTCCTAATGGCAATATATGCTGCAACTGCTCTAGCGCAAGTGCCAACCTCACCATCACCTCCTCCGATTGGCATATTGCCGAACCCGAATGAAGTAGCAAAATGTTGGTCTTCGCTTGAAAATATTCAAGGGTGTGTATGGGAGATTTATACCTCGGTGTTTTCGGGTAGCCTATCTGGAATAGGCCCTGCTTGTTGCAAGGCATTCCTTGGAATTGAAGAAAGCTGCTGGCCCAATATGTTCCCCTCAAACCCTTTTTTTCCTCCATTGCTTGGAAGCACTTGTAGTGCCCGAAAGGCAACACCTCCGGGAAGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

117

Amino Acids

12.36

Weight (kDa)

7.55

Isoelectric Point (pI)

71.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 45 - 106 1.4e-15 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 305
AfiI CCNNNNNNNGG 2 cut(s) 101, 305
AgsI TTSAA 3 cut(s) 152, 161, 251
AluBI AGCT 1 cut(s) 258
AluI AGCT 1 cut(s) 258
AoxI GGCC 2 cut(s) 217, 263
ApeKI GCWGC 2 cut(s) 53, 258
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
Asp700I GAANNNNTTC 1 cut(s) 156
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 2 cut(s) 218, 264
AsuC2I CCSGG 1 cut(s) 342
AsuHPI GGTGA 2 cut(s) 75, 81
BaeGI GKGCMC 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 135
BbvI GCAGC 2 cut(s) 40, 245
BccI CCATC 1 cut(s) 94
BcnI CCSGG 1 cut(s) 342
BfaI CTAG 2 cut(s) 6, 65
BglI GCCNNNNNGGC 1 cut(s) 329
BisI GCNGC 2 cut(s) 54, 259
BlsI GCNGC 2 cut(s) 55, 260
Bme1390I CCNGG 1 cut(s) 342
BmgT120I GGNCC 2 cut(s) 218, 264
BmrFI CCNGG 1 cut(s) 342
BpiI GAAGAC 1 cut(s) 135
BpuMI CCSGG 1 cut(s) 342
BsaJI CCNNGG 2 cut(s) 186, 241
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 305
Bse3DI GCAATG 1 cut(s) 299
BseDI CCNNGG 2 cut(s) 186, 241
BseLI CCNNNNNNNGG 2 cut(s) 101, 305
BseMI GCAATG 1 cut(s) 299
BseRI GAGGAG 1 cut(s) 84
BseSI GKGCMC 1 cut(s) 325
BseXI GCAGC 2 cut(s) 40, 245
BshFI GGCC 2 cut(s) 219, 265
BsiSI CCGG 2 cut(s) 17, 341
BslI CCNNNNNNNGG 2 cut(s) 101, 305
BsmI GAATGC 1 cut(s) 236
BsnI GGCC 2 cut(s) 219, 265
Bsp1286I GDGCHC 1 cut(s) 325
BspANI GGCC 2 cut(s) 219, 265
BsrDI GCAATG 1 cut(s) 299
BssECI CCNNGG 2 cut(s) 186, 241
BssT1I CCWWGG 1 cut(s) 241
BstAPI GCANNNNNTGC 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 263
BstHHI GCGC 1 cut(s) 70
BstMWI GCNNNNNNNGC 4 cut(s) 17, 50, 59, 329
BstSCI CCNGG 1 cut(s) 340
BstSLI GKGCMC 1 cut(s) 325
BstV1I GCAGC 2 cut(s) 40, 245
BstV2I GAAGAC 1 cut(s) 135
BsuRI GGCC 2 cut(s) 219, 265
Cac8I GCNNGC 1 cut(s) 263
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 2 cut(s) 218, 264
CviJI RGCY 4 cut(s) 204, 219, 258, 265
CviKI_1 RGCY 4 cut(s) 204, 219, 258, 265
Eco130I CCWWGG 1 cut(s) 241
EcoO109I RGGNCCY 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaiI YATR 6 cut(s) 49, 51, 107, 172, 183, 272
Fnu4HI GCNGC 2 cut(s) 54, 259
Fsp4HI GCNGC 2 cut(s) 54, 259
FspBI CTAG 2 cut(s) 6, 65
GlaI GCGC 1 cut(s) 69
GluI GCNGC 2 cut(s) 54, 259
HaeIII GGCC 2 cut(s) 219, 265
HapII CCGG 2 cut(s) 17, 341
HhaI GCGC 1 cut(s) 70
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HpaII CCGG 2 cut(s) 17, 341
HphI GGTGA 2 cut(s) 75, 81
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 2 cut(s) 6, 210
HpyAV CCTTC 1 cut(s) 339
HpyCH4V TGCA 2 cut(s) 56, 231
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 50, 59, 329
HspAI GCGC 1 cut(s) 68
LpnPI CCDG 4 cut(s) 30, 195, 234, 247
Lsp1109I GCAGC 2 cut(s) 40, 245
MaeI CTAG 2 cut(s) 6, 65
MboII GAAGA 2 cut(s) 135, 263
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 1 cut(s) 246
MnlI CCTC 7 cut(s) 91, 102, 105, 196, 289, 306, 348
MroXI GAANNNNTTC 1 cut(s) 156
MspI CCGG 2 cut(s) 17, 341
MspR9I CCNGG 1 cut(s) 342
Mva1269I GAATGC 1 cut(s) 236
MwoI GCNNNNNNNGC 4 cut(s) 17, 50, 59, 329
NciI CCSGG 1 cut(s) 342
PctI GAATGC 1 cut(s) 236
PdmI GAANNNNTTC 1 cut(s) 156
PflMI CCANNNNNTGG 1 cut(s) 305
PfoI TCCNGGA 1 cut(s) 340
PkrI GCNGC 2 cut(s) 55, 260
PspPI GGNCC 2 cut(s) 218, 264
SatI GCNGC 2 cut(s) 54, 259
Sau96I GGNCC 2 cut(s) 218, 264
ScrFI CCNGG 1 cut(s) 342
SduI GDGCHC 1 cut(s) 325
SetI ASST 5 cut(s) 83, 94, 188, 260, 340
Sse9I AATT 1 cut(s) 246
SspI AATATT 2 cut(s) 24, 157
SspMI CTAG 2 cut(s) 6, 65
StyD4I CCNGG 1 cut(s) 340
StyI CCWWGG 1 cut(s) 241
TasI AATT 1 cut(s) 246
TseI GCWGC 2 cut(s) 53, 258
TspDTI ATGAA 1 cut(s) 138
Van91I CCANNNNNTGG 1 cut(s) 305
XbaI TCTAGA 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 2 cut(s) 6, 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.