Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002420

Physical Location & Seq

Genomic Coordinates Forward (+)

19120508 .. 19124284

Gene Structure 3777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00097920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGATCCTTTTACTCTCTCCAACAATCATCAAGCATCAAGCAAACATATTAGCGCTTTTGATTTTGGGAGTTCCAGCTTTGCCACCATGTCTAGAGCAGCTCAAGTGATATTTTGCCTCGTGCTAATGGCAACATGCGCTGCAACCGGGCTAGCTTATCAGCCATCCCCACCACCTGCCCCCTTTAACATTCCAGGCCTATTGCCGCCAGGGTTTCCCGGCCTACTGCCGCCAACAAACCCAAATGACATAGCTAAGTGTTGGTCTTCACTTCGGAATATTCAAGGCAATGAGATCGGTGTAGCTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

103

Amino Acids

10.83

Weight (kDa)

7.75

Isoelectric Point (pI)

71.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14378 AT2G27315 AT3G48675 AT4G35165 AT5G52965 AT5G52975 AT5G53742 AT5G53905 AT5G54062
malus_domestica	MD02G1018800.v1.1 MD09G1163700.v1.1 MD09G1164100.v1.1 MD09G1164600.v1.1 MD17G1163700.v1.1
pyrus_communis	pycom09g08120 pycom17g15680
rosa_chinensis	RchiOBHm_Chr1g0323971 RchiOBHm_Chr2g0149601
rosa_laevigata	RLG00000020428 RLG00000030237
rosa_multiflora	Rmu_sc0002529.1_g000027 Rmu_sc0006175.1_g000021 Rmu_sc0006867.1_g000025
rosa_roxburghii	Rroxscaffold_2G00097920 Rroxscaffold_2G00097930 Rroxscaffold_4G00326000 Rroxscaffold_4G00326030
rosa_rugosa	Rorug01G0040900 Rorug02G0412900.1 Rorug02G0413000 Rorug02G0413200 Rorug02G0413300
rosa_samantha	Rh1AG058800 Rh1DG064700 Rh2AG473400 Rh2AG473500 Rh2BG485300 Rh2CG459100 Rh2CG459200 Rh2DG494500
rosa_wichuraiana	Rw2G038600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	184
Acc36I	ACCTGC	1 cut(s)	184
AciI	CCGC	2 cut(s)	206, 230
AclWI	GGATC	1 cut(s)	12
AfeI	AGCGCT	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	284
AjnI	CCWGG	2 cut(s)	193, 208
AluBI	AGCT	5 cut(s)	78, 101, 155, 254, 305
AluI	AGCT	5 cut(s)	78, 101, 155, 254, 305
AlwI	GGATC	1 cut(s)	12
Aor51HI	AGCGCT	1 cut(s)	55
AoxI	GGCC	2 cut(s)	196, 220
ApeKI	GCWGC	2 cut(s)	98, 140
AspLEI	GCGC	2 cut(s)	56, 140
AsuC2I	CCSGG	2 cut(s)	148, 219
AsuNHI	GCTAGC	1 cut(s)	151
BamHI	GGATCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	110, 127
BccI	CCATC	1 cut(s)	172
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BciT130I	CCWGG	2 cut(s)	195, 210
BcnI	CCSGG	2 cut(s)	148, 219
BfaI	CTAG	2 cut(s)	93, 152
BfoI	RGCGCY	1 cut(s)	57
BfuAI	ACCTGC	1 cut(s)	184
BisI	GCNGC	4 cut(s)	99, 141, 206, 230
BlsI	GCNGC	4 cut(s)	100, 142, 207, 231
Bme1390I	CCNGG	4 cut(s)	148, 195, 210, 219
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	4 cut(s)	148, 195, 210, 219
BmsI	GCATC	1 cut(s)	44
BmtI	GCTAGC	1 cut(s)	155
BpiI	GAAGAC	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	87
BpuMI	CCSGG	2 cut(s)	148, 219
BsaJI	CCNNGG	1 cut(s)	209
Bse3DI	GCAATG	1 cut(s)	295
BseBI	CCWGG	2 cut(s)	195, 210
BseDI	CCNNGG	1 cut(s)	209
BseGI	GGATG	1 cut(s)	164
BseMI	GCAATG	1 cut(s)	295
BseXI	GCAGC	2 cut(s)	110, 127
BshFI	GGCC	2 cut(s)	198, 222
BsiSI	CCGG	2 cut(s)	147, 219
BsnI	GGCC	2 cut(s)	198, 222
Bsp143I	GATC	2 cut(s)	4, 294
BspACI	CCGC	2 cut(s)	206, 230
BspANI	GGCC	2 cut(s)	198, 222
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	184
BspOI	GCTAGC	1 cut(s)	155
BspPI	GGATC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	209
BssMI	GATC	2 cut(s)	4, 294
BssSI	CACGAG	1 cut(s)	119
Bst2BI	CACGAG	1 cut(s)	119
Bst2UI	CCWGG	2 cut(s)	195, 210
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	2 cut(s)	255, 306
BstF5I	GGATG	1 cut(s)	164
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	2 cut(s)	56, 140
BstKTI	GATC	2 cut(s)	7, 297
BstMBI	GATC	2 cut(s)	4, 294
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	2 cut(s)	195, 210
BstNSI	RCATGY	1 cut(s)	138
BstSCI	CCNGG	4 cut(s)	146, 193, 208, 217
BstV1I	GCAGC	2 cut(s)	110, 127
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	198, 222
BtsCI	GGATG	1 cut(s)	164
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	153
CfoI	GCGC	2 cut(s)	56, 140
CviAII	CATG	2 cut(s)	88, 135
CviJI	RGCY	9 cut(s)	78, 101, 151, 155, 163, 198, 222, 254, 305
CviKI_1	RGCY	9 cut(s)	78, 101, 151, 155, 163, 198, 222, 254, 305
DdeI	CTNAG	2 cut(s)	255, 306
DpnI	GATC	2 cut(s)	6, 296
DpnII	GATC	2 cut(s)	4, 294
Eco147I	AGGCCT	1 cut(s)	198
Eco47III	AGCGCT	1 cut(s)	55
EcoRII	CCWGG	2 cut(s)	193, 208
FaeI	CATG	2 cut(s)	91, 138
FaiI	YATR	4 cut(s)	48, 89, 136, 251
FatI	CATG	2 cut(s)	87, 134
Fnu4HI	GCNGC	4 cut(s)	99, 141, 206, 230
FokI	GGATG	1 cut(s)	151
Fsp4HI	GCNGC	4 cut(s)	99, 141, 206, 230
FspBI	CTAG	2 cut(s)	93, 152
GlaI	GCGC	2 cut(s)	55, 139
GluI	GCNGC	4 cut(s)	99, 141, 206, 230
HaeII	RGCGCY	1 cut(s)	57
HaeIII	GGCC	2 cut(s)	198, 222
HapII	CCGG	2 cut(s)	147, 219
HhaI	GCGC	2 cut(s)	56, 140
Hin1II	CATG	2 cut(s)	91, 138
Hin6I	GCGC	2 cut(s)	54, 138
HinP1I	GCGC	2 cut(s)	54, 138
HpaII	CCGG	2 cut(s)	147, 219
Hpy188I	TCNGA	1 cut(s)	276
Hpy188III	TCNNGA	1 cut(s)	93
HpyCH4V	TGCA	1 cut(s)	143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	2 cut(s)	255, 306
Hsp92II	CATG	2 cut(s)	91, 138
HspAI	GCGC	2 cut(s)	54, 138
Kzo9I	GATC	2 cut(s)	4, 294
LpnPI	CCDG	8 cut(s)	88, 160, 180, 189, 195, 207, 222, 232
Lsp1109I	GCAGC	2 cut(s)	110, 127
LweI	GCATC	1 cut(s)	44
MaeI	CTAG	2 cut(s)	93, 152
MalI	GATC	2 cut(s)	6, 296
MboI	GATC	2 cut(s)	4, 294
MboII	GAAGA	1 cut(s)	258
MflI	RGATCY	1 cut(s)	4
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	1 cut(s)	128
MseI	TTAA	1 cut(s)	186
MspI	CCGG	2 cut(s)	147, 219
MspR9I	CCNGG	4 cut(s)	148, 195, 210, 219
MvaI	CCWGG	2 cut(s)	195, 210
MwoI	GCNNNNNNNGC	1 cut(s)	137
NciI	CCSGG	2 cut(s)	148, 219
NdeII	GATC	2 cut(s)	4, 294
NheI	GCTAGC	1 cut(s)	151
NlaIII	CATG	2 cut(s)	91, 138
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	138
PaqCI	CACCTGC	1 cut(s)	184
PceI	AGGCCT	1 cut(s)	198
PkrI	GCNGC	4 cut(s)	100, 142, 207, 231
Psp6I	CCWGG	2 cut(s)	193, 208
PspGI	CCWGG	2 cut(s)	193, 208
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	4 cut(s)	99, 141, 206, 230
Sau3AI	GATC	2 cut(s)	4, 294
ScrFI	CCNGG	4 cut(s)	148, 195, 210, 219
SetI	ASST	6 cut(s)	80, 103, 157, 178, 256, 307
SfaNI	GCATC	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	102
SmoI	CTYRAG	1 cut(s)	102
SseBI	AGGCCT	1 cut(s)	198
SsiI	CCGC	2 cut(s)	206, 230
SspI	AATATT	1 cut(s)	280
SspMI	CTAG	2 cut(s)	93, 152
StuI	AGGCCT	1 cut(s)	198
StyD4I	CCNGG	4 cut(s)	146, 193, 208, 217
TauI	GCSGC	2 cut(s)	208, 232
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TseI	GCWGC	2 cut(s)	98, 140
XbaI	TCTAGA	1 cut(s)	92
XceI	RCATGY	1 cut(s)	138
XspI	CTAG	2 cut(s)	93, 152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.