Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002420

Physical Location & Seq

Genomic Coordinates Reverse (-)

52893282 .. 52894245

Gene Structure 964 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0413200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGGTGCTTCCCTGAGCTATGTCTCAGTTTCCCTGAGCTATGTCTCAGATCTAGGGCTTCTGCCTCTTGTTTCTTCTTTTTTTTCCTCCTTCAATCTCCCTCCCTTCTCCTTCCATCTTGCCCCAATTTTCTTTCTGCACTTTAACCCCAAATTTGCTCTAACCTATTCCTCACCACCCATCACTTTCTTTTACCCACCATCTCTCATCTCCAGATCTTGTTCCCTGGATTTCTTCTATTCCATTTCAAATCGGTACCATGGCTTGGTTGTTGCAGTGGCTTCTCTCAAACGCGATTTCTCGCGTCTCAATCGGAAGATAGGTAGAGCCTTGGCTCGGGTGCATGCACCACCTACTTCTATGTTCTATTTTCGGGGCCTCTTGGCTCCTCTTGATCTGGGTTTCATTTGCCTAGATTTGTTCTCAAAGTTGTGGCTGCAAATCTCATGTTATGGTGCAAATTTGTACTGTGGGGAAGAGGATATATATGTGGTTAGATCCTCTTTTTTCTTCTGTTTTTCCATTTTCAGGGTTATTTTGATCAGGCTTTGGTGTAGGGGTCTCCTTACAAGCTGCAATTTTGGAGTTCCAGGTGCCCCAAGACATGCGCTCCCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

206

Amino Acids

23.21

Weight (kDa)

9.42

Isoelectric Point (pI)

51.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14378 AT2G27315 AT3G48675 AT4G35165 AT5G52965 AT5G52975 AT5G53742 AT5G53905 AT5G54062
malus_domestica	MD02G1018800.v1.1 MD09G1163700.v1.1 MD09G1164100.v1.1 MD09G1164600.v1.1 MD17G1163700.v1.1
pyrus_communis	pycom09g08120 pycom17g15680
rosa_chinensis	RchiOBHm_Chr1g0323971 RchiOBHm_Chr2g0149601
rosa_laevigata	RLG00000020428 RLG00000030237
rosa_multiflora	Rmu_sc0002529.1_g000027 Rmu_sc0006175.1_g000021 Rmu_sc0006867.1_g000025
rosa_roxburghii	Rroxscaffold_2G00097920 Rroxscaffold_2G00097930 Rroxscaffold_4G00326000 Rroxscaffold_4G00326030
rosa_rugosa	Rorug01G0040900 Rorug02G0412900.1 Rorug02G0413000 Rorug02G0413200 Rorug02G0413300
rosa_samantha	Rh1AG058800 Rh1DG064700 Rh2AG473400 Rh2AG473500 Rh2BG485300 Rh2CG459100 Rh2CG459200 Rh2DG494500
rosa_wichuraiana	Rw2G038600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	255
AccB1I	GGYRCC	2 cut(s)	255, 593
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccII	CGCG	2 cut(s)	294, 304
AclWI	GGATC	1 cut(s)	492
AcsI	RAATTY	2 cut(s)	152, 460
AfaI	GTAC	2 cut(s)	257, 467
AfiI	CCNNNNNNNGG	3 cut(s)	265, 336, 528
AgsI	TTSAA	2 cut(s)	94, 249
AjnI	CCWGG	2 cut(s)	225, 589
AluBI	AGCT	3 cut(s)	18, 39, 573
AluI	AGCT	3 cut(s)	18, 39, 573
Alw26I	GTCTC	4 cut(s)	28, 49, 311, 566
AlwI	GGATC	1 cut(s)	492
Ama87I	CYCGRG	1 cut(s)	336
AoxI	GGCC	1 cut(s)	376
ApeKI	GCWGC	2 cut(s)	436, 573
ApoI	RAATTY	2 cut(s)	152, 460
Asp718I	GGTACC	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	610
AspS9I	GGNCC	1 cut(s)	376
AsuHPI	GGTGA	1 cut(s)	165
AvaI	CYCGRG	1 cut(s)	336
BaeGI	GKGCMC	1 cut(s)	598
BanI	GGYRCC	2 cut(s)	255, 593
BbvI	GCAGC	2 cut(s)	423, 560
BccI	CCATC	3 cut(s)	123, 188, 208
BciT130I	CCWGG	2 cut(s)	227, 591
BclI	TGATCA	1 cut(s)	540
BcoDI	GTCTC	4 cut(s)	28, 49, 311, 566
BfaI	CTAG	2 cut(s)	53, 413
BglII	AGATCT	2 cut(s)	49, 215
BisI	GCNGC	2 cut(s)	437, 574
BlsI	GCNGC	2 cut(s)	438, 575
Bme1390I	CCNGG	2 cut(s)	227, 591
BmeT110I	CYCGRG	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	4 cut(s)	257, 377, 387, 595
BmrFI	CCNGG	2 cut(s)	227, 591
BpmI	CTGGAG	1 cut(s)	196
Bpu10I	CCTNAGC	2 cut(s)	14, 35
BsaI	GGTCTC	1 cut(s)	566
BsaJI	CCNNGG	3 cut(s)	225, 259, 330
BsaXI	ACNNNNNCTCC	1 cut(s)	594
Bsc4I	CCNNNNNNNGG	3 cut(s)	265, 336, 528
BseBI	CCWGG	2 cut(s)	227, 591
BseDI	CCNNGG	3 cut(s)	225, 259, 330
BseLI	CCNNNNNNNGG	3 cut(s)	265, 336, 528
BseMII	CTCAG	4 cut(s)	5, 26, 39, 60
BseRI	GAGGAG	1 cut(s)	378
BseSI	GKGCMC	1 cut(s)	598
BseXI	GCAGC	2 cut(s)	423, 560
BsgI	GTGCAG	1 cut(s)	122
Bsh1236I	CGCG	2 cut(s)	294, 304
BshFI	GGCC	1 cut(s)	378
BshNI	GGYRCC	2 cut(s)	255, 593
BsiHKCI	CYCGRG	1 cut(s)	336
BslI	CCNNNNNNNGG	3 cut(s)	265, 336, 528
BsmAI	GTCTC	4 cut(s)	28, 49, 311, 566
BsmBI	CGTCTC	1 cut(s)	311
BsnI	GGCC	1 cut(s)	378
Bso31I	GGTCTC	1 cut(s)	566
BsoBI	CYCGRG	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	598
Bsp143I	GATC	5 cut(s)	49, 215, 394, 497, 540
Bsp19I	CCATGG	1 cut(s)	259
BspANI	GGCC	1 cut(s)	378
BspCNI	CTCAG	4 cut(s)	6, 27, 38, 59
BspFNI	CGCG	2 cut(s)	294, 304
BspLI	GGNNCC	4 cut(s)	257, 377, 387, 595
BspPI	GGATC	1 cut(s)	492
BspT107I	GGYRCC	2 cut(s)	255, 593
BspTNI	GGTCTC	1 cut(s)	566
BssECI	CCNNGG	3 cut(s)	225, 259, 330
BssMI	GATC	5 cut(s)	49, 215, 394, 497, 540
BssT1I	CCWWGG	2 cut(s)	259, 330
Bst2UI	CCWGG	2 cut(s)	227, 591
Bst4CI	ACNGT	1 cut(s)	470
Bst6I	CTCTTC	1 cut(s)	471
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	4 cut(s)	14, 25, 35, 46
BstDSI	CCRYGG	1 cut(s)	259
BstFNI	CGCG	2 cut(s)	294, 304
BstHHI	GCGC	1 cut(s)	610
BstKTI	GATC	5 cut(s)	52, 218, 397, 500, 543
BstMAI	GTCTC	4 cut(s)	28, 49, 311, 566
BstMBI	GATC	5 cut(s)	49, 215, 394, 497, 540
BstMWI	GCNNNNNNNGC	1 cut(s)	614
BstNI	CCWGG	2 cut(s)	227, 591
BstNSI	RCATGY	2 cut(s)	347, 608
BstSCI	CCNGG	2 cut(s)	225, 589
BstSLI	GKGCMC	1 cut(s)	598
BstUI	CGCG	2 cut(s)	294, 304
BstV1I	GCAGC	2 cut(s)	423, 560
BstX2I	RGATCY	3 cut(s)	49, 215, 497
BstYI	RGATCY	3 cut(s)	49, 215, 497
BsuRI	GGCC	1 cut(s)	378
BtgI	CCRYGG	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	345
CfoI	GCGC	1 cut(s)	610
Cfr13I	GGNCC	1 cut(s)	376
CseI	GACGC	1 cut(s)	293
Csp6I	GTAC	2 cut(s)	256, 466
CviAII	CATG	4 cut(s)	260, 344, 447, 605
CviQI	GTAC	2 cut(s)	256, 466
DdeI	CTNAG	4 cut(s)	14, 25, 35, 46
DpnI	GATC	5 cut(s)	51, 217, 396, 499, 542
DpnII	GATC	5 cut(s)	49, 215, 394, 497, 540
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
Eco130I	CCWWGG	2 cut(s)	259, 330
Eco31I	GGTCTC	1 cut(s)	566
Eco88I	CYCGRG	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	376
EcoRII	CCWGG	2 cut(s)	225, 589
EcoT14I	CCWWGG	2 cut(s)	259, 330
ErhI	CCWWGG	2 cut(s)	259, 330
Esp3I	CGTCTC	1 cut(s)	311
FaeI	CATG	4 cut(s)	263, 347, 450, 608
FatI	CATG	4 cut(s)	259, 343, 446, 604
FbaI	TGATCA	1 cut(s)	540
Fnu4HI	GCNGC	2 cut(s)	437, 574
Fsp4HI	GCNGC	2 cut(s)	437, 574
FspBI	CTAG	2 cut(s)	53, 413
GlaI	GCGC	1 cut(s)	609
GluI	GCNGC	2 cut(s)	437, 574
GsuI	CTGGAG	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	378
HgaI	GACGC	1 cut(s)	293
HhaI	GCGC	1 cut(s)	610
Hin1II	CATG	4 cut(s)	263, 347, 450, 608
Hin6I	GCGC	1 cut(s)	608
HinP1I	GCGC	1 cut(s)	608
HphI	GGTGA	1 cut(s)	165
Hpy188I	TCNGA	2 cut(s)	49, 315
Hpy188III	TCNNGA	2 cut(s)	213, 392
HpyAV	CCTTC	3 cut(s)	100, 115, 121
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4V	TGCA	7 cut(s)	139, 275, 343, 347, 439, 458, 576
HpyF10VI	GCNNNNNNNGC	1 cut(s)	614
HpyF3I	CTNAG	4 cut(s)	14, 25, 35, 46
Hsp92II	CATG	4 cut(s)	263, 347, 450, 608
HspAI	GCGC	1 cut(s)	608
KpnI	GGTACC	1 cut(s)	259
Ksp22I	TGATCA	1 cut(s)	540
Kzo9I	GATC	5 cut(s)	49, 215, 394, 497, 540
LmnI	GCTCC	2 cut(s)	391, 615
Lsp1109I	GCAGC	2 cut(s)	423, 560
MaeI	CTAG	2 cut(s)	53, 413
MalI	GATC	5 cut(s)	51, 217, 396, 499, 542
MboI	GATC	5 cut(s)	49, 215, 394, 497, 540
MboII	GAAGA	5 cut(s)	66, 226, 328, 488, 502
MflI	RGATCY	3 cut(s)	49, 215, 497
MhlI	GDGCHC	1 cut(s)	598
MluCI	AATT	4 cut(s)	126, 152, 460, 577
MnlI	CCTC	8 cut(s)	75, 97, 111, 181, 389, 399, 472, 511
MseI	TTAA	1 cut(s)	144
MspR9I	CCNGG	2 cut(s)	227, 591
MvaI	CCWGG	2 cut(s)	227, 591
MvnI	CGCG	2 cut(s)	294, 304
MwoI	GCNNNNNNNGC	1 cut(s)	614
NcoI	CCATGG	1 cut(s)	259
NdeII	GATC	5 cut(s)	49, 215, 394, 497, 540
NlaIII	CATG	4 cut(s)	263, 347, 450, 608
NlaIV	GGNNCC	4 cut(s)	257, 377, 387, 595
NspI	RCATGY	2 cut(s)	347, 608
PaeI	GCATGC	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	2 cut(s)	438, 575
Psp6I	CCWGG	2 cut(s)	225, 589
PspGI	CCWGG	2 cut(s)	225, 589
PspN4I	GGNNCC	4 cut(s)	257, 377, 387, 595
PspPI	GGNCC	1 cut(s)	376
PsuI	RGATCY	3 cut(s)	49, 215, 497
RsaI	GTAC	2 cut(s)	257, 467
RsaNI	GTAC	2 cut(s)	256, 466
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	2 cut(s)	437, 574
Sau3AI	GATC	5 cut(s)	49, 215, 394, 497, 540
Sau96I	GGNCC	1 cut(s)	376
ScrFI	CCNGG	2 cut(s)	227, 591
SduI	GDGCHC	1 cut(s)	598
SetI	ASST	7 cut(s)	20, 41, 167, 325, 355, 575, 595
SphI	GCATGC	1 cut(s)	347
Sse9I	AATT	4 cut(s)	126, 152, 460, 577
SspMI	CTAG	2 cut(s)	53, 413
StyD4I	CCNGG	2 cut(s)	225, 589
StyI	CCWWGG	2 cut(s)	259, 330
TaaI	ACNGT	1 cut(s)	470
TasI	AATT	4 cut(s)	126, 152, 460, 577
TatI	WGTACW	1 cut(s)	465
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	1 cut(s)	282
TseI	GCWGC	2 cut(s)	436, 573
TspDTI	ATGAA	1 cut(s)	394
TspRI	CASTG	1 cut(s)	282
Van91I	CCANNNNNTGG	1 cut(s)	265
XapI	RAATTY	2 cut(s)	152, 460
XceI	RCATGY	2 cut(s)	347, 608
XspI	CTAG	2 cut(s)	53, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.