Rroxscaffold_2G00097930

Egg cell-secreted protein 1.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002420
Physical Location & Seq
Forward (+)
19124874 .. 19125592
719 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00097930.1

Sequence Viewer

Length: 525 bp
ATGGATCAGGAACTGATGTACTCTGTGTATTTATATGCCGGTTATACTATTAAAGCATACACATACAAGCGGATAAAGAATGATAATATTATCTCTGAATTTGAAATGCGTTTGCTACTATTCTCAAATTCCAGCTTTGCCATCATGTCTAGAGCAGCTCAAGTGATATTTTGCCTCGTGCTAATGGCAACATGCGCCGCAACCGGGCTAGTGCATCAGCCACCCCCACCATCACCACCTCCCCTCCTTAACATTCCAGGCCTATCGCCGCCAGGGTTTCCCGGCCTACTGCCGCCAACAAACCCAAATGACATAGCAAAGTGTTGGTCTTCACTTCAGAACATTCAAGGGTGTGAATCGGAAATCTTTACCTCATTCTTTACTCACAAAATAGAAGTAGGCCCTGCCTGTTGTAAAGCTTTCCTTGCAATTGAAGAGAGTTGCTGGCCGAAAATGTTCCCCTTACCTCCTTTCTTTCCTCCATTGCTCAAGAACACTTGTGCTCAGAAGGCAGCTCTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

174

Amino Acids

19.25

Weight (kDa)

7.51

Isoelectric Point (pI)

73.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 107 - 167 7.9e-18 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 70, 198, 269, 293
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 446
AcsI RAATTY 2 cut(s) 98, 127
AcuI CTGAAG 1 cut(s) 320
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 1 cut(s) 204
AgsI TTSAA 3 cut(s) 104, 347, 434
AjnI CCWGG 2 cut(s) 256, 271
AluBI AGCT 4 cut(s) 135, 158, 419, 515
AluI AGCT 4 cut(s) 135, 158, 419, 515
Alw21I GWGCWC 1 cut(s) 505
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 13
AoxI GGCC 4 cut(s) 259, 283, 400, 446
ApeKI GCWGC 2 cut(s) 155, 512
ApoI RAATTY 2 cut(s) 98, 127
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
Asp700I GAANNNNTTC 1 cut(s) 455
AspLEI GCGC 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 401
AsuC2I CCSGG 2 cut(s) 205, 282
AsuHPI GGTGA 1 cut(s) 225
BauI CACGAG 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 321
Bbv12I GWGCWC 1 cut(s) 505
BbvI GCAGC 1 cut(s) 167
BccI CCATC 2 cut(s) 149, 238
BciT130I CCWGG 2 cut(s) 258, 273
BcnI CCSGG 2 cut(s) 205, 282
BfaI CTAG 2 cut(s) 150, 209
BisI GCNGC 5 cut(s) 156, 198, 269, 293, 513
BlsI GCNGC 5 cut(s) 157, 199, 270, 294, 514
Bme1390I CCNGG 4 cut(s) 205, 258, 273, 282
BmgT120I GGNCC 1 cut(s) 401
BmrFI CCNGG 4 cut(s) 205, 258, 273, 282
BmsI GCATC 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 321
BpuEI CTTGAG 2 cut(s) 144, 473
BpuMI CCSGG 2 cut(s) 205, 282
BsaJI CCNNGG 1 cut(s) 272
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bsc4I CCNNNNNNNGG 1 cut(s) 204
Bse118I RCCGGY 1 cut(s) 38
Bse3DI GCAATG 1 cut(s) 482
BseBI CCWGG 2 cut(s) 258, 273
BseDI CCNNGG 1 cut(s) 272
BseLI CCNNNNNNNGG 1 cut(s) 204
BseMI GCAATG 1 cut(s) 482
BseMII CTCAG 1 cut(s) 518
BseXI GCAGC 1 cut(s) 167
BshFI GGCC 4 cut(s) 261, 285, 402, 448
BsiHKAI GWGCWC 1 cut(s) 505
BsiSI CCGG 3 cut(s) 39, 204, 282
BslI CCNNNNNNNGG 1 cut(s) 204
BsnI GGCC 4 cut(s) 261, 285, 402, 448
Bsp1286I GDGCHC 1 cut(s) 505
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 4 cut(s) 70, 198, 269, 293
BspANI GGCC 4 cut(s) 261, 285, 402, 448
BspCNI CTCAG 1 cut(s) 517
BspPI GGATC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 482
BsrFI RCCGGY 1 cut(s) 38
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 1 cut(s) 4
BssSI CACGAG 1 cut(s) 176
Bst2BI CACGAG 1 cut(s) 176
Bst2UI CCWGG 2 cut(s) 258, 273
Bst6I CTCTTC 1 cut(s) 429
BstC8I GCNNGC 1 cut(s) 446
BstDEI CTNAG 1 cut(s) 504
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 3 cut(s) 194, 425, 509
BstNI CCWGG 2 cut(s) 258, 273
BstNSI RCATGY 1 cut(s) 195
BstSCI CCNGG 4 cut(s) 203, 256, 271, 280
BstV1I GCAGC 1 cut(s) 167
BstV2I GAAGAC 1 cut(s) 321
BsuRI GGCC 4 cut(s) 261, 285, 402, 448
Cac8I GCNNGC 1 cut(s) 446
CaiI CAGNNNCTG 1 cut(s) 13
CfoI GCGC 1 cut(s) 197
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 1 cut(s) 401
Csp6I GTAC 1 cut(s) 19
CviAII CATG 2 cut(s) 145, 192
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 1 cut(s) 504
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
EaeI YGGCCR 1 cut(s) 446
Eam1104I CTCTTC 1 cut(s) 429
EarI CTCTTC 1 cut(s) 429
Eco147I AGGCCT 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 320
EcoO109I RGGNCCY 1 cut(s) 401
EcoRII CCWGG 2 cut(s) 256, 271
FaeI CATG 2 cut(s) 148, 195
FaiI YATR 8 cut(s) 34, 36, 45, 58, 64, 146, 193, 314
FalI AAGNNNNNCTT 2 cut(s) 408, 440
FatI CATG 2 cut(s) 144, 191
Fnu4HI GCNGC 5 cut(s) 156, 198, 269, 293, 513
Fsp4HI GCNGC 5 cut(s) 156, 198, 269, 293, 513
FspBI CTAG 2 cut(s) 150, 209
GlaI GCGC 1 cut(s) 196
GluI GCNGC 5 cut(s) 156, 198, 269, 293, 513
HaeIII GGCC 4 cut(s) 261, 285, 402, 448
HapII CCGG 3 cut(s) 39, 204, 282
HhaI GCGC 1 cut(s) 197
Hin1II CATG 2 cut(s) 148, 195
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HindIII AAGCTT 1 cut(s) 417
HinfI GANTC 1 cut(s) 356
HpaII CCGG 3 cut(s) 39, 204, 282
HphI GGTGA 1 cut(s) 225
Hpy188I TCNGA 4 cut(s) 97, 339, 361, 507
Hpy188III TCNNGA 3 cut(s) 8, 150, 490
HpyAV CCTTC 1 cut(s) 502
HpyCH4V TGCA 2 cut(s) 214, 428
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 425, 509
HpyF3I CTNAG 1 cut(s) 504
Hsp92II CATG 2 cut(s) 148, 195
HspAI GCGC 1 cut(s) 195
Kzo9I GATC 1 cut(s) 4
Lsp1109I GCAGC 1 cut(s) 167
LweI GCATC 1 cut(s) 223
MaeI CTAG 2 cut(s) 150, 209
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 2 cut(s) 321, 446
MfeI CAATTG 1 cut(s) 429
MhlI GDGCHC 1 cut(s) 505
MluCI AATT 3 cut(s) 98, 127, 429
MnlI CCTC 6 cut(s) 185, 249, 254, 382, 477, 489
MroXI GAANNNNTTC 1 cut(s) 455
MseI TTAA 3 cut(s) 51, 249, 523
MspI CCGG 3 cut(s) 39, 204, 282
MspR9I CCNGG 4 cut(s) 205, 258, 273, 282
MunI CAATTG 1 cut(s) 429
MvaI CCWGG 2 cut(s) 258, 273
MwoI GCNNNNNNNGC 3 cut(s) 194, 425, 509
NciI CCSGG 2 cut(s) 205, 282
NdeII GATC 1 cut(s) 4
NlaIII CATG 2 cut(s) 148, 195
NspI RCATGY 1 cut(s) 195
PceI AGGCCT 1 cut(s) 261
PdmI GAANNNNTTC 1 cut(s) 455
PfeI GAWTC 1 cut(s) 356
PkrI GCNGC 5 cut(s) 157, 199, 270, 294, 514
Psp6I CCWGG 2 cut(s) 256, 271
PspGI CCWGG 2 cut(s) 256, 271
PspPI GGNCC 1 cut(s) 401
PstNI CAGNNNCTG 1 cut(s) 13
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SaqAI TTAA 3 cut(s) 51, 249, 523
SatI GCNGC 5 cut(s) 156, 198, 269, 293, 513
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 1 cut(s) 401
ScrFI CCNGG 4 cut(s) 205, 258, 273, 282
SduI GDGCHC 1 cut(s) 505
SetI ASST 7 cut(s) 137, 160, 241, 374, 421, 469, 517
SfaNI GCATC 1 cut(s) 223
SmlI CTYRAG 2 cut(s) 159, 488
SmoI CTYRAG 2 cut(s) 159, 488
Sse9I AATT 3 cut(s) 98, 127, 429
SseBI AGGCCT 1 cut(s) 261
SsiI CCGC 4 cut(s) 70, 198, 269, 293
SspI AATATT 1 cut(s) 88
SspMI CTAG 2 cut(s) 150, 209
StuI AGGCCT 1 cut(s) 261
StyD4I CCNGG 4 cut(s) 203, 256, 271, 280
TasI AATT 3 cut(s) 98, 127, 429
TatI WGTACW 1 cut(s) 18
TauI GCSGC 3 cut(s) 200, 271, 295
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 3 cut(s) 51, 249, 523
Tru9I TTAA 3 cut(s) 51, 249, 523
TseI GCWGC 2 cut(s) 155, 512
XapI RAATTY 2 cut(s) 98, 127
XbaI TCTAGA 1 cut(s) 149
XceI RCATGY 1 cut(s) 195
XmnI GAANNNNTTC 1 cut(s) 455
XspI CTAG 2 cut(s) 150, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.