MD09G1164600.v1.1

lipoprotein transporter activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0002420
Physical Location & Seq
Forward (+)
13481727 .. 13482188
462 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1164600.v1.1.491

Sequence Viewer

Length: 462 bp
ATGGCAACATGCGCTGCAACCGGATTTGCGCACGTGCCACCCCCACCGCTACTCCCGAACTTTCCCAATATCCCAGGCCTACTGCCACCTAGGATCCCAAGCTCATTGCCGCCAGGGATCCCAGGCCTGCTGCCACCTGGAATCCCAGGCCTGTTGCCGCCAGGGATCCCAGGCCTGCTGCCACCAGGAATTCCTGGCCTACGACCGCCAGTGGACCCGGCTGAGATAGCAAAGTGTTGGTCTTCACTTCAGGGTATTCCAGGGTGTGCACAGGAAATTATTACCACAATCTTTACCGGTAAATTTGCGCTAAGCCCTGCTTGTTGCAAGGCCATCGTCGAAGTTGATGAGAAATGCTTGCCGAAATTGTTGCCGTTATTTCCTTCTGTTTCCGCATTGCTTAAGCACAACTGTGCTCAACAGAATGCTGCTCCTCCTAATGCATTTGGTTCAAAGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

154

Amino Acids

15.68

Weight (kDa)

8.54

Isoelectric Point (pI)

58.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 78 - 138 1.3e-14 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 30
AciI CCGC 5 cut(s) 47, 110, 158, 206, 393
AclWI GGATC 6 cut(s) 88, 101, 112, 125, 160, 173
AcsI RAATTY 2 cut(s) 189, 302
AcuI CTGAAG 1 cut(s) 233
AcvI CACGTG 1 cut(s) 34
AflII CTTAAG 1 cut(s) 401
AgeI ACCGGT 1 cut(s) 296
AgsI TTSAA 1 cut(s) 453
AleI CACNNNNGTG 1 cut(s) 411
AluBI AGCT 1 cut(s) 102
AluI AGCT 1 cut(s) 102
Alw21I GWGCWC 2 cut(s) 271, 418
Alw44I GTGCAC 1 cut(s) 267
AlwI GGATC 6 cut(s) 88, 101, 112, 125, 160, 173
AoxI GGCC 6 cut(s) 76, 124, 148, 172, 196, 330
ApaLI GTGCAC 1 cut(s) 267
ApeKI GCWGC 4 cut(s) 14, 130, 178, 428
ApoI RAATTY 2 cut(s) 189, 302
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
AsiGI ACCGGT 1 cut(s) 296
AspA2I CCTAGG 1 cut(s) 89
AspLEI GCGC 3 cut(s) 14, 31, 310
AspS9I GGNCC 1 cut(s) 214
AsuC2I CCSGG 1 cut(s) 218
AvaII GGWCC 1 cut(s) 214
AvrII CCTAGG 1 cut(s) 89
BaeGI GKGCMC 1 cut(s) 271
BamHI GGATCC 3 cut(s) 93, 117, 165
BbrPI CACGTG 1 cut(s) 34
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 2 cut(s) 271, 418
BbvI GCAGC 3 cut(s) 117, 165, 415
BccI CCATC 1 cut(s) 341
BceAI ACGGC 1 cut(s) 358
BcgI CGANNNNNNTGC 4 cut(s) 316, 350, 352, 386
BcnI CCSGG 1 cut(s) 218
BfaI CTAG 2 cut(s) 90, 460
BfrI CTTAAG 1 cut(s) 401
BisI GCNGC 6 cut(s) 15, 110, 131, 158, 179, 429
BlnI CCTAGG 1 cut(s) 89
BlpI GCTNAGC 1 cut(s) 311
BlsI GCNGC 6 cut(s) 16, 111, 132, 159, 180, 430
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 4 cut(s) 95, 119, 167, 216
BpiI GAAGAC 1 cut(s) 234
Bpu1102I GCTNAGC 1 cut(s) 311
BpuMI CCSGG 1 cut(s) 218
BsaAI YACGTR 1 cut(s) 34
BsaJI CCNNGG 8 cut(s) 73, 89, 113, 121, 145, 161, 169, 260
BsaWI WCCGGW 2 cut(s) 20, 296
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 1 cut(s) 209
Bse3DI GCAATG 2 cut(s) 104, 395
BseDI CCNNGG 8 cut(s) 73, 89, 113, 121, 145, 161, 169, 260
BseMI GCAATG 2 cut(s) 104, 395
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 209
BseRI GAGGAG 1 cut(s) 423
BseSI GKGCMC 1 cut(s) 271
BseXI GCAGC 3 cut(s) 117, 165, 415
Bsh1285I CGRYCG 1 cut(s) 206
BshFI GGCC 6 cut(s) 78, 126, 150, 174, 198, 332
BshTI ACCGGT 1 cut(s) 296
BsiEI CGRYCG 1 cut(s) 206
BsiHKAI GWGCWC 2 cut(s) 271, 418
BsiSI CCGG 3 cut(s) 21, 218, 297
BsmI GAATGC 1 cut(s) 430
BsnI GGCC 6 cut(s) 78, 126, 150, 174, 198, 332
Bsp1286I GDGCHC 2 cut(s) 271, 418
Bsp143I GATC 3 cut(s) 93, 117, 165
Bsp1720I GCTNAGC 1 cut(s) 311
BspACI CCGC 5 cut(s) 47, 110, 158, 206, 393
BspANI GGCC 6 cut(s) 78, 126, 150, 174, 198, 332
BspCNI CTCAG 1 cut(s) 214
BspLI GGNNCC 4 cut(s) 95, 119, 167, 216
BspPI GGATC 6 cut(s) 88, 101, 112, 125, 160, 173
BspTI CTTAAG 1 cut(s) 401
BsrDI GCAATG 2 cut(s) 104, 395
BsrFI RCCGGY 1 cut(s) 296
BsrI ACTGG 1 cut(s) 209
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 8 cut(s) 73, 89, 113, 121, 145, 161, 169, 260
BssMI GATC 3 cut(s) 93, 117, 165
BssT1I CCWWGG 1 cut(s) 89
Bst4CI ACNGT 1 cut(s) 413
BstAFI CTTAAG 1 cut(s) 401
BstBAI YACGTR 1 cut(s) 34
BstC8I GCNNGC 3 cut(s) 128, 176, 359
BstDEI CTNAG 2 cut(s) 222, 311
BstHHI GCGC 3 cut(s) 14, 31, 310
BstKTI GATC 3 cut(s) 96, 120, 168
BstMBI GATC 3 cut(s) 93, 117, 165
BstMCI CGRYCG 1 cut(s) 206
BstMWI GCNNNNNNNGC 2 cut(s) 11, 227
BstNSI RCATGY 1 cut(s) 12
BstSLI GKGCMC 1 cut(s) 271
BstV1I GCAGC 3 cut(s) 117, 165, 415
BstV2I GAAGAC 1 cut(s) 234
BstX2I RGATCY 3 cut(s) 93, 117, 165
BstYI RGATCY 3 cut(s) 93, 117, 165
BsuRI GGCC 6 cut(s) 78, 126, 150, 174, 198, 332
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 3 cut(s) 128, 176, 359
CfoI GCGC 3 cut(s) 14, 31, 310
Cfr10I RCCGGY 1 cut(s) 296
Cfr13I GGNCC 1 cut(s) 214
CspAI ACCGGT 1 cut(s) 296
CviAII CATG 1 cut(s) 9
CviJI RGCY 9 cut(s) 78, 102, 126, 150, 174, 198, 221, 315, 332
CviKI_1 RGCY 9 cut(s) 78, 102, 126, 150, 174, 198, 221, 315, 332
DdeI CTNAG 2 cut(s) 222, 311
DpnI GATC 3 cut(s) 95, 119, 167
DpnII GATC 3 cut(s) 93, 117, 165
Eco130I CCWWGG 1 cut(s) 89
Eco147I AGGCCT 4 cut(s) 78, 126, 150, 174
Eco47I GGWCC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 233
Eco72I CACGTG 1 cut(s) 34
EcoRI GAATTC 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 89
EcoT22I ATGCAT 1 cut(s) 445
ErhI CCWWGG 1 cut(s) 89
FaeI CATG 1 cut(s) 12
FaiI YATR 1 cut(s) 10
FalI AAGNNNNNCTT 2 cut(s) 304, 336
FatI CATG 1 cut(s) 8
Fnu4HI GCNGC 6 cut(s) 15, 110, 131, 158, 179, 429
Fsp4HI GCNGC 6 cut(s) 15, 110, 131, 158, 179, 429
FspBI CTAG 2 cut(s) 90, 460
FspI TGCGCA 1 cut(s) 30
GlaI GCGC 3 cut(s) 13, 30, 309
GluI GCNGC 6 cut(s) 15, 110, 131, 158, 179, 429
HaeIII GGCC 6 cut(s) 78, 126, 150, 174, 198, 332
HapII CCGG 3 cut(s) 21, 218, 297
HhaI GCGC 3 cut(s) 14, 31, 310
Hin1II CATG 1 cut(s) 12
Hin6I GCGC 3 cut(s) 12, 29, 308
HinP1I GCGC 3 cut(s) 12, 29, 308
HinfI GANTC 1 cut(s) 141
HpaII CCGG 3 cut(s) 21, 218, 297
Hpy166II GTNNAC 2 cut(s) 214, 269
Hpy188III TCNNGA 1 cut(s) 55
Hpy8I GTNNAC 2 cut(s) 214, 269
Hpy99I CGWCG 1 cut(s) 341
HpyAV CCTTC 1 cut(s) 393
HpyCH4III ACNGT 1 cut(s) 413
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 4 cut(s) 17, 269, 327, 443
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 227
HpyF3I CTNAG 2 cut(s) 222, 311
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 1 cut(s) 12
HspAI GCGC 3 cut(s) 12, 29, 308
Kzo9I GATC 3 cut(s) 93, 117, 165
LmnI GCTCC 1 cut(s) 436
Lsp1109I GCAGC 3 cut(s) 117, 165, 415
MaeI CTAG 2 cut(s) 90, 460
MaeII ACGT 1 cut(s) 33
MalI GATC 3 cut(s) 95, 119, 167
MboI GATC 3 cut(s) 93, 117, 165
MboII GAAGA 1 cut(s) 234
MflI RGATCY 3 cut(s) 93, 117, 165
MhlI GDGCHC 2 cut(s) 271, 418
MluCI AATT 4 cut(s) 189, 276, 302, 365
MnlI CCTC 1 cut(s) 444
Mph1103I ATGCAT 1 cut(s) 445
MseI TTAA 1 cut(s) 402
MslI CAYNNNNRTG 1 cut(s) 411
MspCI CTTAAG 1 cut(s) 401
MspI CCGG 3 cut(s) 21, 218, 297
Mva1269I GAATGC 1 cut(s) 430
MwoI GCNNNNNNNGC 2 cut(s) 11, 227
NciI CCSGG 1 cut(s) 218
NdeII GATC 3 cut(s) 93, 117, 165
NlaIII CATG 1 cut(s) 12
NlaIV GGNNCC 4 cut(s) 95, 119, 167, 216
NsbI TGCGCA 1 cut(s) 30
NsiI ATGCAT 1 cut(s) 445
NspI RCATGY 1 cut(s) 12
OliI CACNNNNGTG 1 cut(s) 411
PceI AGGCCT 4 cut(s) 78, 126, 150, 174
PctI GAATGC 1 cut(s) 430
PfeI GAWTC 1 cut(s) 141
PinAI ACCGGT 1 cut(s) 296
PkrI GCNGC 6 cut(s) 16, 111, 132, 159, 180, 430
PmaCI CACGTG 1 cut(s) 34
PmlI CACGTG 1 cut(s) 34
Ppu21I YACGTR 1 cut(s) 34
PspCI CACGTG 1 cut(s) 34
PspN4I GGNNCC 4 cut(s) 95, 119, 167, 216
PspPI GGNCC 1 cut(s) 214
PsuI RGATCY 3 cut(s) 93, 117, 165
RseI CAYNNNNRTG 1 cut(s) 411
SaqAI TTAA 1 cut(s) 402
SatI GCNGC 6 cut(s) 15, 110, 131, 158, 179, 429
Sau3AI GATC 3 cut(s) 93, 117, 165
Sau96I GGNCC 1 cut(s) 214
SduI GDGCHC 2 cut(s) 271, 418
SetI ASST 4 cut(s) 36, 91, 104, 139
SinI GGWCC 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 411
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 4 cut(s) 189, 276, 302, 365
SseBI AGGCCT 4 cut(s) 78, 126, 150, 174
SsiI CCGC 5 cut(s) 47, 110, 158, 206, 393
SspMI CTAG 2 cut(s) 90, 460
StuI AGGCCT 4 cut(s) 78, 126, 150, 174
StyI CCWWGG 1 cut(s) 89
TaaI ACNGT 1 cut(s) 413
TaiI ACGT 1 cut(s) 36
TaqI TCGA 1 cut(s) 339
TasI AATT 4 cut(s) 189, 276, 302, 365
TauI GCSGC 2 cut(s) 112, 160
TfiI GAWTC 1 cut(s) 141
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TscAI CASTG 1 cut(s) 216
TseI GCWGC 4 cut(s) 14, 130, 178, 428
TspRI CASTG 1 cut(s) 216
Vha464I CTTAAG 1 cut(s) 401
VneI GTGCAC 1 cut(s) 267
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 2 cut(s) 189, 302
XceI RCATGY 1 cut(s) 12
XmaJI CCTAGG 1 cut(s) 89
XspI CTAG 2 cut(s) 90, 460
Zsp2I ATGCAT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.