Rorug02G0413000

Egg cell-secreted protein 1.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002420
Physical Location & Seq
Reverse (-)
52883789 .. 52884204
416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0413000.1

Sequence Viewer

Length: 378 bp
ATGATGCGTGCTCACTACGTCCTAGCACTCCTCGCCCTCCTCTATCCTCTCTTCGCCGCAGGTGCTTCTGCTCCGACTGGTGAGTGGAAGCCTGTAGACCTCCACGATCCGCTTGTGACAGATATCGGAAAGTTTGCAGTTTACGAATACAACCATCAATATAAGAAGGATTTGCTCTTTCAGAATGTGACTAACGGCGCCTACAAGGATGTCGCATATTCGCCGTACTCGAATGCCACCTTGTATCAGCTTGTCATTACTGTTCAAGGCTATGACAGAACTCCTAACCCCAAACTTGCAGTGTATCAGGCTACTGTCTTCCGTAGGACTTGGGATCGATTTAAGAAATTGCTCTCCTTTGTTAAGATTTCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

125

Amino Acids

14.34

Weight (kDa)

9.49

Isoelectric Point (pI)

6.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQAPI PF16845 33 - 122 1.9e-14 Aspartic acid proteinase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 50
Acc36I ACCTGC 1 cut(s) 50
AccB1I GGYRCC 1 cut(s) 197
AccI GTMKAC 1 cut(s) 96
AciI CCGC 2 cut(s) 57, 110
AclWI GGATC 2 cut(s) 101, 342
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 1 cut(s) 227
AgsI TTSAA 2 cut(s) 266, 372
AluBI AGCT 1 cut(s) 250
AluI AGCT 1 cut(s) 250
Alw21I GWGCWC 1 cut(s) 13
AlwI GGATC 2 cut(s) 101, 342
AspLEI GCGC 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 92
BanI GGYRCC 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 310
Bbv12I GWGCWC 1 cut(s) 13
BccI CCATC 1 cut(s) 162
BceAI ACGGC 2 cut(s) 208, 211
BfaI CTAG 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 93
BfoI RGCGCY 1 cut(s) 201
BfuAI ACCTGC 1 cut(s) 50
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 199
BpiI GAAGAC 1 cut(s) 310
Bsa29I ATCGAT 1 cut(s) 337
BsaHI GRCGYC 1 cut(s) 198
Bse1I ACTGG 1 cut(s) 82
BseCI ATCGAT 1 cut(s) 337
BseGI GGATG 1 cut(s) 214
BseNI ACTGG 1 cut(s) 82
BseRI GAGGAG 2 cut(s) 20, 29
BshNI GGYRCC 1 cut(s) 197
BshVI ATCGAT 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 13
BsmI GAATGC 1 cut(s) 238
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 2 cut(s) 106, 334
BspACI CCGC 2 cut(s) 57, 110
BspDI ATCGAT 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 199
BspMI ACCTGC 1 cut(s) 50
BspPI GGATC 2 cut(s) 101, 342
BspT107I GGYRCC 1 cut(s) 197
BsrI ACTGG 1 cut(s) 82
BssMI GATC 2 cut(s) 106, 334
BssNI GRCGYC 1 cut(s) 198
Bst4CI ACNGT 2 cut(s) 262, 316
Bst6I CTCTTC 1 cut(s) 56
BstACI GRCGYC 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 9
BstF5I GGATG 1 cut(s) 214
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 2 cut(s) 109, 337
BstMBI GATC 2 cut(s) 106, 334
BstMWI GCNNNNNNNGC 2 cut(s) 32, 62
BstSFI CTRYAG 1 cut(s) 93
BstV2I GAAGAC 1 cut(s) 310
Bsu15I ATCGAT 1 cut(s) 337
BsuTUI ATCGAT 1 cut(s) 337
BtsCI GGATG 1 cut(s) 214
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 1 cut(s) 306
BveI ACCTGC 1 cut(s) 50
Cac8I GCNNGC 1 cut(s) 9
CfoI GCGC 1 cut(s) 200
ClaI ATCGAT 1 cut(s) 337
Csp6I GTAC 1 cut(s) 226
CviJI RGCY 4 cut(s) 91, 250, 270, 311
CviKI_1 RGCY 4 cut(s) 91, 250, 270, 311
CviQI GTAC 1 cut(s) 226
DinI GGCGCC 1 cut(s) 199
DpnI GATC 2 cut(s) 108, 336
DpnII GATC 2 cut(s) 106, 334
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco32I GATATC 1 cut(s) 124
EcoRV GATATC 1 cut(s) 124
EgeI GGCGCC 1 cut(s) 199
EheI GGCGCC 1 cut(s) 199
FaiI YATR 3 cut(s) 162, 217, 273
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 1 cut(s) 23
GlaI GCGC 1 cut(s) 199
GluI GCNGC 1 cut(s) 57
HaeII RGCGCY 1 cut(s) 201
HhaI GCGC 1 cut(s) 200
Hin1I GRCGYC 1 cut(s) 198
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 2 cut(s) 97, 142
Hpy188I TCNGA 3 cut(s) 75, 128, 183
Hpy8I GTNNAC 2 cut(s) 97, 142
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 2 cut(s) 262, 316
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 2 cut(s) 137, 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 62
HpySE526I ACGT 1 cut(s) 18
Hsp92I GRCGYC 1 cut(s) 198
HspAI GCGC 1 cut(s) 198
KasI GGCGCC 1 cut(s) 197
Kzo9I GATC 2 cut(s) 106, 334
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 4 cut(s) 45, 63, 105, 293
MaeI CTAG 1 cut(s) 23
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 2 cut(s) 115, 187
MalI GATC 2 cut(s) 108, 336
MboI GATC 2 cut(s) 106, 334
MboII GAAGA 2 cut(s) 43, 310
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 1 cut(s) 347
Mly113I GGCGCC 1 cut(s) 198
MmeI TCCRAC 1 cut(s) 98
MnlI CCTC 5 cut(s) 41, 47, 50, 57, 110
MseI TTAA 2 cut(s) 342, 363
Mva1269I GAATGC 1 cut(s) 238
MwoI GCNNNNNNNGC 2 cut(s) 32, 62
NarI GGCGCC 1 cut(s) 198
NdeII GATC 2 cut(s) 106, 334
NlaIV GGNNCC 1 cut(s) 199
NmuCI GTSAC 2 cut(s) 115, 187
PaqCI CACCTGC 1 cut(s) 50
PcsI WCGNNNNNNNCGW 1 cut(s) 227
PctI GAATGC 1 cut(s) 238
PkrI GCNGC 1 cut(s) 58
PluTI GGCGCC 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 199
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SaqAI TTAA 2 cut(s) 342, 363
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 2 cut(s) 106, 334
SduI GDGCHC 1 cut(s) 13
SetI ASST 5 cut(s) 21, 64, 102, 242, 252
SfcI CTRYAG 1 cut(s) 93
SfoI GGCGCC 1 cut(s) 199
Sse9I AATT 1 cut(s) 347
SsiI CCGC 2 cut(s) 57, 110
SspDI GGCGCC 1 cut(s) 197
SspMI CTAG 1 cut(s) 23
TaaI ACNGT 2 cut(s) 262, 316
TaiI ACGT 1 cut(s) 21
TaqI TCGA 2 cut(s) 230, 337
TasI AATT 1 cut(s) 347
TauI GCSGC 1 cut(s) 59
Tru1I TTAA 2 cut(s) 342, 363
Tru9I TTAA 2 cut(s) 342, 363
TscAI CASTG 1 cut(s) 306
TseFI GTSAC 2 cut(s) 115, 187
Tsp45I GTSAC 2 cut(s) 115, 187
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 1 cut(s) 306
XmiI GTMKAC 1 cut(s) 96
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.