MD09G1163700.v1.1

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0002420
Physical Location & Seq
Forward (+)
13375071 .. 13375349
279 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1163700.v1.1.491

Sequence Viewer

Length: 279 bp
ATGCCCCCATTCACACAAATCTCTGGCTTCGTCCCTGCCCCGGGTGAGGTAGCAAAGTGCTGGTCTTCACTTCAGAACATTCCAGGGTGTGCATCAGAAATATATACCACAATCTTGATTGGTAAATTTGCACTAGGCCCTGCTTGTTGCAAGGCCTTGGTCGCAGTTGATGCGAATTGCTTGGCGAATTTGTTCCCATTGTTTCCTTCCATTCCTGCATTGTTCATAGGCAACTGTGCTAATGCTGCTGCTCCTAGAGCAACTGGATCAAAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

93

Amino Acids

9.46

Weight (kDa)

8.28

Isoelectric Point (pI)

57.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 19 - 69 3.7e-13 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 274
AcsI RAATTY 2 cut(s) 125, 187
AcuI CTGAAG 1 cut(s) 56
AfiI CCNNNNNNNGG 3 cut(s) 40, 41, 46
AjnI CCWGG 1 cut(s) 82
AlwI GGATC 1 cut(s) 274
Ama87I CYCGRG 1 cut(s) 40
AoxI GGCC 2 cut(s) 136, 153
ApeKI GCWGC 2 cut(s) 245, 248
ApoI RAATTY 2 cut(s) 125, 187
ArsI GACNNNNNNTTYG 2 cut(s) 47, 79
Asp700I GAANNNNTTC 1 cut(s) 191
AspS9I GGNCC 1 cut(s) 137
AsuC2I CCSGG 2 cut(s) 41, 42
AsuHPI GGTGA 1 cut(s) 56
AvaI CYCGRG 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 57
BbvI GCAGC 2 cut(s) 232, 235
BciT130I CCWGG 1 cut(s) 84
BcnI CCSGG 2 cut(s) 41, 42
BfaI CTAG 2 cut(s) 134, 255
BisI GCNGC 2 cut(s) 246, 249
BlsI GCNGC 2 cut(s) 247, 250
Bme1390I CCNGG 3 cut(s) 41, 42, 84
BmeT110I CYCGRG 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 137
BmrFI CCNGG 3 cut(s) 41, 42, 84
BmsI GCATC 2 cut(s) 101, 160
BpiI GAAGAC 1 cut(s) 57
BpuMI CCSGG 2 cut(s) 41, 42
BsaJI CCNNGG 4 cut(s) 39, 40, 83, 156
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 41, 46
Bse1I ACTGG 1 cut(s) 268
BseBI CCWGG 1 cut(s) 84
BseDI CCNNGG 4 cut(s) 39, 40, 83, 156
BseLI CCNNNNNNNGG 3 cut(s) 40, 41, 46
BseNI ACTGG 1 cut(s) 268
BseXI GCAGC 2 cut(s) 232, 235
BshFI GGCC 2 cut(s) 138, 155
BsiHKCI CYCGRG 1 cut(s) 40
BsiSI CCGG 1 cut(s) 41
BslFI GGGAC 1 cut(s) 17
BslI CCNNNNNNNGG 3 cut(s) 40, 41, 46
BsmFI GGGAC 1 cut(s) 17
BsnI GGCC 2 cut(s) 138, 155
BsoBI CYCGRG 1 cut(s) 40
Bsp143I GATC 1 cut(s) 266
BspANI GGCC 2 cut(s) 138, 155
BspPI GGATC 1 cut(s) 274
BsrI ACTGG 1 cut(s) 268
BssECI CCNNGG 4 cut(s) 39, 40, 83, 156
BssMI GATC 1 cut(s) 266
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 236
BstAPI GCANNNNNTGC 1 cut(s) 170
BstKTI GATC 1 cut(s) 269
BstMBI GATC 1 cut(s) 266
BstMWI GCNNNNNNNGC 4 cut(s) 161, 170, 245, 257
BstNI CCWGG 1 cut(s) 84
BstSCI CCNGG 3 cut(s) 39, 40, 82
BstV1I GCAGC 2 cut(s) 232, 235
BstV2I GAAGAC 1 cut(s) 57
BsuRI GGCC 2 cut(s) 138, 155
Cfr13I GGNCC 1 cut(s) 137
Cfr9I CCCGGG 1 cut(s) 40
CviJI RGCY 3 cut(s) 27, 138, 155
CviKI_1 RGCY 3 cut(s) 27, 138, 155
DpnI GATC 1 cut(s) 268
DpnII GATC 1 cut(s) 266
Eco130I CCWWGG 1 cut(s) 156
Eco147I AGGCCT 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 40
EcoO109I RGGNCCY 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaiI YATR 3 cut(s) 103, 105, 227
FaqI GGGAC 1 cut(s) 17
Fnu4HI GCNGC 2 cut(s) 246, 249
Fsp4HI GCNGC 2 cut(s) 246, 249
FspBI CTAG 2 cut(s) 134, 255
GluI GCNGC 2 cut(s) 246, 249
HaeIII GGCC 2 cut(s) 138, 155
HapII CCGG 1 cut(s) 41
HpaII CCGG 1 cut(s) 41
HphI GGTGA 1 cut(s) 56
Hpy188I TCNGA 2 cut(s) 75, 97
Hpy188III TCNNGA 1 cut(s) 115
HpyAV CCTTC 1 cut(s) 216
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4V TGCA 4 cut(s) 92, 131, 150, 218
HpyF10VI GCNNNNNNNGC 4 cut(s) 161, 170, 245, 257
Kzo9I GATC 1 cut(s) 266
LmnI GCTCC 1 cut(s) 256
LpnPI CCDG 9 cut(s) 9, 46, 48, 54, 69, 96, 153, 228, 249
Lsp1109I GCAGC 2 cut(s) 232, 235
LweI GCATC 2 cut(s) 101, 160
MaeI CTAG 2 cut(s) 134, 255
MalI GATC 1 cut(s) 268
MboI GATC 1 cut(s) 266
MboII GAAGA 1 cut(s) 57
MluCI AATT 3 cut(s) 125, 175, 187
MnlI CCTC 1 cut(s) 40
MroXI GAANNNNTTC 1 cut(s) 191
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 3 cut(s) 41, 42, 84
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 4 cut(s) 161, 170, 245, 257
NciI CCSGG 2 cut(s) 41, 42
NdeII GATC 1 cut(s) 266
PceI AGGCCT 1 cut(s) 155
PdmI GAANNNNTTC 1 cut(s) 191
PkrI GCNGC 2 cut(s) 247, 250
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
PspPI GGNCC 1 cut(s) 137
SatI GCNGC 2 cut(s) 246, 249
Sau3AI GATC 1 cut(s) 266
Sau96I GGNCC 1 cut(s) 137
ScrFI CCNGG 3 cut(s) 41, 42, 84
SetI ASST 1 cut(s) 51
SfaNI GCATC 2 cut(s) 101, 160
SmaI CCCGGG 1 cut(s) 42
Sse9I AATT 3 cut(s) 125, 175, 187
SseBI AGGCCT 1 cut(s) 155
SspMI CTAG 2 cut(s) 134, 255
StuI AGGCCT 1 cut(s) 155
StyD4I CCNGG 3 cut(s) 39, 40, 82
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 236
TasI AATT 3 cut(s) 125, 175, 187
TseI GCWGC 2 cut(s) 245, 248
TspDTI ATGAA 1 cut(s) 214
TspMI CCCGGG 1 cut(s) 40
XapI RAATTY 2 cut(s) 125, 187
XmaI CCCGGG 1 cut(s) 40
XmnI GAANNNNTTC 1 cut(s) 191
XspI CTAG 2 cut(s) 134, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.