AT5G52965

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002420
Physical Location & Seq
Forward (+)
21478841 .. 21479203
363 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G52965.1

Sequence Viewer

Length: 363 bp
ATGGCAACCAAAACTTTTCTCTCAATCTCTTTAATGGTTTCCCTTTGTGCTGCCATTTTTGTCTCTCAAGGAGTAGCTCATATGCAAACACCACCAACGGTTCCAGGACTTCTCCTACCTGGCTTACCTATTGATCTTGTAAAATGTTGGTCGTCTCTCTTCAATGTTGAAGGATGTGTGCTCGAGATCGCCAAATCAATTTTCTCTGGAAAATTCGAAAATGTCGAAGCCGCATGTTGCAAGGCGTTTTCAACCTTAGATGCTAACTGTTGGCCCCATATGTTTCCGTTGAATCCATTTTTCCCTCCTCTCCTCAAGGACAACTGCGCTCGCATTGTCCCCAACTCCCCTACACACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

120

Amino Acids

13.01

Weight (kDa)

6.79

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 48 - 109 8.6e-16 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 231
AcsI RAATTY 1 cut(s) 212
AgsI TTSAA 4 cut(s) 163, 170, 252, 292
AjnI CCWGG 2 cut(s) 103, 118
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 2 cut(s) 67, 159
Ama87I CYCGRG 1 cut(s) 182
AoxI GGCC 1 cut(s) 272
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 212
AspLEI GCGC 1 cut(s) 329
AspS9I GGNCC 1 cut(s) 273
AsuII TTCGAA 1 cut(s) 216
AvaI CYCGRG 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 37
BciT130I CCWGG 2 cut(s) 105, 120
BcoDI GTCTC 2 cut(s) 67, 159
BisI GCNGC 2 cut(s) 51, 231
BlsI GCNGC 2 cut(s) 52, 232
Bme1390I CCNGG 2 cut(s) 105, 120
BmeT110I CYCGRG 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 2 cut(s) 102, 275
BmrFI CCNGG 2 cut(s) 105, 120
BmsI GCATC 1 cut(s) 250
Bpu14I TTCGAA 1 cut(s) 216
BpuEI CTTGAG 2 cut(s) 51, 299
BseBI CCWGG 2 cut(s) 105, 120
BseGI GGATG 1 cut(s) 179
BseRI GAGGAG 2 cut(s) 297, 302
BseXI GCAGC 1 cut(s) 37
BshFI GGCC 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 183
BsiHKCI CYCGRG 1 cut(s) 182
BslFI GGGAC 1 cut(s) 323
BsmAI GTCTC 2 cut(s) 67, 159
BsmBI CGTCTC 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 323
BsnI GGCC 1 cut(s) 274
BsoBI CYCGRG 1 cut(s) 182
Bsp119I TTCGAA 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 2 cut(s) 133, 186
BspACI CCGC 1 cut(s) 231
BspANI GGCC 1 cut(s) 274
BspLI GGNNCC 2 cut(s) 102, 275
BspT104I TTCGAA 1 cut(s) 216
BssMI GATC 2 cut(s) 133, 186
Bst2UI CCWGG 2 cut(s) 105, 120
Bst4CI ACNGT 2 cut(s) 100, 269
Bst6I CTCTTC 1 cut(s) 164
BstBI TTCGAA 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 1 cut(s) 256
BstF5I GGATG 1 cut(s) 179
BstHHI GCGC 1 cut(s) 329
BstKTI GATC 2 cut(s) 136, 189
BstMAI GTCTC 2 cut(s) 67, 159
BstMBI GATC 2 cut(s) 133, 186
BstNI CCWGG 2 cut(s) 105, 120
BstNSI RCATGY 1 cut(s) 237
BstSCI CCNGG 2 cut(s) 103, 118
BstV1I GCAGC 1 cut(s) 37
BsuRI GGCC 1 cut(s) 274
BtsCI GGATG 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 331
CfoI GCGC 1 cut(s) 329
Cfr13I GGNCC 1 cut(s) 273
CviAII CATG 1 cut(s) 234
CviJI RGCY 4 cut(s) 77, 123, 230, 274
CviKI_1 RGCY 4 cut(s) 77, 123, 230, 274
DdeI CTNAG 1 cut(s) 256
DpnI GATC 2 cut(s) 135, 188
DpnII GATC 2 cut(s) 133, 186
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
Eco88I CYCGRG 1 cut(s) 182
EcoRII CCWGG 2 cut(s) 103, 118
Esp3I CGTCTC 1 cut(s) 159
FaeI CATG 1 cut(s) 237
FaiI YATR 5 cut(s) 81, 83, 235, 279, 281
FaqI GGGAC 1 cut(s) 323
FatI CATG 1 cut(s) 233
FauNDI CATATG 2 cut(s) 81, 279
Fnu4HI GCNGC 2 cut(s) 51, 231
FokI GGATG 1 cut(s) 186
Fsp4HI GCNGC 2 cut(s) 51, 231
GlaI GCGC 1 cut(s) 328
GluI GCNGC 2 cut(s) 51, 231
HaeIII GGCC 1 cut(s) 274
HhaI GCGC 1 cut(s) 329
Hin1II CATG 1 cut(s) 237
Hin6I GCGC 1 cut(s) 327
HinP1I GCGC 1 cut(s) 327
HinfI GANTC 1 cut(s) 292
Hpy188III TCNNGA 2 cut(s) 184, 207
HpyAV CCTTC 1 cut(s) 164
HpyCH4III ACNGT 2 cut(s) 100, 269
HpyCH4V TGCA 2 cut(s) 85, 240
HpyF3I CTNAG 1 cut(s) 256
Hsp92II CATG 1 cut(s) 237
HspAI GCGC 1 cut(s) 327
Kzo9I GATC 2 cut(s) 133, 186
LpnPI CCDG 5 cut(s) 90, 105, 117, 132, 192
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 1 cut(s) 250
MalI GATC 2 cut(s) 135, 188
MboI GATC 2 cut(s) 133, 186
MboII GAAGA 1 cut(s) 151
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 2 cut(s) 198, 212
MnlI CCTC 3 cut(s) 315, 318, 323
MseI TTAA 1 cut(s) 32
MspR9I CCNGG 2 cut(s) 105, 120
MvaI CCWGG 2 cut(s) 105, 120
NdeI CATATG 2 cut(s) 81, 279
NdeII GATC 2 cut(s) 133, 186
NlaIII CATG 1 cut(s) 237
NlaIV GGNNCC 2 cut(s) 102, 275
NspI RCATGY 1 cut(s) 237
NspV TTCGAA 1 cut(s) 216
PaeR7I CTCGAG 1 cut(s) 182
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 1 cut(s) 292
PfoI TCCNGGA 1 cut(s) 103
PkrI GCNGC 2 cut(s) 52, 232
Psp6I CCWGG 2 cut(s) 103, 118
PspGI CCWGG 2 cut(s) 103, 118
PspN4I GGNNCC 2 cut(s) 102, 275
PspPI GGNCC 1 cut(s) 273
SaqAI TTAA 1 cut(s) 32
SatI GCNGC 2 cut(s) 51, 231
Sau3AI GATC 2 cut(s) 133, 186
Sau96I GGNCC 1 cut(s) 273
ScrFI CCNGG 2 cut(s) 105, 120
SduI GDGCHC 1 cut(s) 183
SetI ASST 4 cut(s) 79, 121, 130, 257
SfaNI GCATC 1 cut(s) 250
Sfr274I CTCGAG 1 cut(s) 182
SfuI TTCGAA 1 cut(s) 216
SlaI CTCGAG 1 cut(s) 182
SmlI CTYRAG 3 cut(s) 66, 182, 314
SmoI CTYRAG 3 cut(s) 66, 182, 314
Sse9I AATT 2 cut(s) 198, 212
SsiI CCGC 1 cut(s) 231
StyD4I CCNGG 2 cut(s) 103, 118
TaaI ACNGT 2 cut(s) 100, 269
TaqI TCGA 3 cut(s) 183, 216, 225
TasI AATT 2 cut(s) 198, 212
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TseI GCWGC 1 cut(s) 50
TspGWI ACGGA 1 cut(s) 276
XapI RAATTY 1 cut(s) 212
XceI RCATGY 1 cut(s) 237
XhoI CTCGAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.