AT5G52975

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002420
Physical Location & Seq
Forward (+)
21481457 .. 21482038
582 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G52975.1

Sequence Viewer

Length: 366 bp
ATGGGAAGCAAAACTATTCTCTCAGTCATTTTGATTGTTTCCCTTTGTGTTGCCATTTTTGTCACTCAAGGAGTAGCTCATATGCAAACACCACCGACGACGGTTCCAGGAATTTTCCCACCTGGCTTACCTATTGATCTGGTAAAATGTTGGTCGTCTCTCTTCAATGTTGAAGGATGTGTGCTCGAGATCGCCAAATCAATTTTCTCTGGAAAATTCGAAAATGTCGAAGCCGCATGTTGCAAGGCGTTTTCGACCTTAGATGCTAACTGTTGGCCTCACATGTTTCCGTTGAATCCGTTCTTCCCTCCTCTCCTCAAGGATAGCTGCGCTCGTATTGTCCCCAACTCCCCTACACACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

121

Amino Acids

13.08

Weight (kDa)

6.79

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 49 - 110 9.7e-16 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 234
AcsI RAATTY 2 cut(s) 111, 215
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 3 cut(s) 166, 173, 295
AjnI CCWGG 2 cut(s) 106, 121
AjuI GAANNNNNNNTTGG 2 cut(s) 188, 220
AluBI AGCT 2 cut(s) 77, 327
AluI AGCT 2 cut(s) 77, 327
Alw21I GWGCWC 1 cut(s) 186
Alw26I GTCTC 1 cut(s) 162
Ama87I CYCGRG 1 cut(s) 185
AoxI GGCC 1 cut(s) 275
ApeKI GCWGC 1 cut(s) 327
ApoI RAATTY 2 cut(s) 111, 215
Asp700I GAANNNNTTC 1 cut(s) 299
AspLEI GCGC 1 cut(s) 332
AsuII TTCGAA 1 cut(s) 219
AvaI CYCGRG 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 314
BciT130I CCWGG 2 cut(s) 108, 123
BcoDI GTCTC 1 cut(s) 162
BisI GCNGC 2 cut(s) 234, 328
BlsI GCNGC 2 cut(s) 235, 329
Bme1390I CCNGG 2 cut(s) 108, 123
BmeT110I CYCGRG 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 105
BmrFI CCNGG 2 cut(s) 108, 123
BmsI GCATC 1 cut(s) 253
Bpu14I TTCGAA 1 cut(s) 219
BpuEI CTTGAG 2 cut(s) 51, 302
BseBI CCWGG 2 cut(s) 108, 123
BseGI GGATG 1 cut(s) 182
BseMII CTCAG 1 cut(s) 36
BseRI GAGGAG 2 cut(s) 300, 305
BseXI GCAGC 1 cut(s) 314
BshFI GGCC 1 cut(s) 277
BsiHKAI GWGCWC 1 cut(s) 186
BsiHKCI CYCGRG 1 cut(s) 185
BslFI GGGAC 1 cut(s) 326
BsmAI GTCTC 1 cut(s) 162
BsmBI CGTCTC 1 cut(s) 162
BsmFI GGGAC 1 cut(s) 326
BsnI GGCC 1 cut(s) 277
BsoBI CYCGRG 1 cut(s) 185
Bsp119I TTCGAA 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 2 cut(s) 136, 189
BspACI CCGC 1 cut(s) 234
BspANI GGCC 1 cut(s) 277
BspCNI CTCAG 1 cut(s) 35
BspLI GGNNCC 1 cut(s) 105
BspT104I TTCGAA 1 cut(s) 219
BssMI GATC 2 cut(s) 136, 189
Bst2UI CCWGG 2 cut(s) 108, 123
Bst4CI ACNGT 2 cut(s) 103, 272
Bst6I CTCTTC 1 cut(s) 167
BstBI TTCGAA 1 cut(s) 219
BstDEI CTNAG 2 cut(s) 22, 259
BstF5I GGATG 1 cut(s) 182
BstHHI GCGC 1 cut(s) 332
BstKTI GATC 2 cut(s) 139, 192
BstMAI GTCTC 1 cut(s) 162
BstMBI GATC 2 cut(s) 136, 189
BstNI CCWGG 2 cut(s) 108, 123
BstNSI RCATGY 2 cut(s) 240, 286
BstSCI CCNGG 2 cut(s) 106, 121
BstV1I GCAGC 1 cut(s) 314
BsuRI GGCC 1 cut(s) 277
BtsCI GGATG 1 cut(s) 182
CfoI GCGC 1 cut(s) 332
CviAII CATG 2 cut(s) 237, 283
CviJI RGCY 5 cut(s) 77, 126, 233, 277, 327
CviKI_1 RGCY 5 cut(s) 77, 126, 233, 277, 327
DdeI CTNAG 2 cut(s) 22, 259
DpnI GATC 2 cut(s) 138, 191
DpnII GATC 2 cut(s) 136, 189
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Eco88I CYCGRG 1 cut(s) 185
EcoRII CCWGG 2 cut(s) 106, 121
Esp3I CGTCTC 1 cut(s) 162
FaeI CATG 2 cut(s) 240, 286
FaiI YATR 4 cut(s) 81, 83, 238, 284
FaqI GGGAC 1 cut(s) 326
FatI CATG 2 cut(s) 236, 282
FauNDI CATATG 1 cut(s) 81
Fnu4HI GCNGC 2 cut(s) 234, 328
FokI GGATG 1 cut(s) 189
Fsp4HI GCNGC 2 cut(s) 234, 328
GlaI GCGC 1 cut(s) 331
GluI GCNGC 2 cut(s) 234, 328
HaeIII GGCC 1 cut(s) 277
HhaI GCGC 1 cut(s) 332
Hin1II CATG 2 cut(s) 240, 286
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HinfI GANTC 1 cut(s) 295
Hpy188III TCNNGA 2 cut(s) 187, 210
Hpy99I CGWCG 2 cut(s) 100, 103
HpyAV CCTTC 1 cut(s) 167
HpyCH4III ACNGT 2 cut(s) 103, 272
HpyCH4V TGCA 2 cut(s) 85, 243
HpyF3I CTNAG 2 cut(s) 22, 259
Hsp92II CATG 2 cut(s) 240, 286
HspAI GCGC 1 cut(s) 330
Kzo9I GATC 2 cut(s) 136, 189
LpnPI CCDG 6 cut(s) 93, 108, 120, 125, 135, 195
Lsp1109I GCAGC 1 cut(s) 314
LweI GCATC 1 cut(s) 253
MaeIII GTNAC 1 cut(s) 61
MalI GATC 2 cut(s) 138, 191
MboI GATC 2 cut(s) 136, 189
MboII GAAGA 2 cut(s) 154, 295
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 3 cut(s) 111, 201, 215
MnlI CCTC 4 cut(s) 288, 318, 321, 326
MroXI GAANNNNTTC 1 cut(s) 299
MspR9I CCNGG 2 cut(s) 108, 123
MvaI CCWGG 2 cut(s) 108, 123
NdeI CATATG 1 cut(s) 81
NdeII GATC 2 cut(s) 136, 189
NlaIII CATG 2 cut(s) 240, 286
NlaIV GGNNCC 1 cut(s) 105
NmuCI GTSAC 1 cut(s) 61
NspI RCATGY 2 cut(s) 240, 286
NspV TTCGAA 1 cut(s) 219
PaeR7I CTCGAG 1 cut(s) 185
PciI ACATGT 1 cut(s) 282
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 299
PfeI GAWTC 1 cut(s) 295
PfoI TCCNGGA 1 cut(s) 106
PkrI GCNGC 2 cut(s) 235, 329
PscI ACATGT 1 cut(s) 282
Psp6I CCWGG 2 cut(s) 106, 121
PspGI CCWGG 2 cut(s) 106, 121
PspN4I GGNNCC 1 cut(s) 105
SatI GCNGC 2 cut(s) 234, 328
Sau3AI GATC 2 cut(s) 136, 189
ScrFI CCNGG 2 cut(s) 108, 123
SduI GDGCHC 1 cut(s) 186
SetI ASST 5 cut(s) 79, 124, 133, 260, 329
SfaNI GCATC 1 cut(s) 253
Sfr274I CTCGAG 1 cut(s) 185
SfuI TTCGAA 1 cut(s) 219
SlaI CTCGAG 1 cut(s) 185
SmlI CTYRAG 3 cut(s) 66, 185, 317
SmoI CTYRAG 3 cut(s) 66, 185, 317
Sse9I AATT 3 cut(s) 111, 201, 215
SsiI CCGC 1 cut(s) 234
StyD4I CCNGG 2 cut(s) 106, 121
TaaI ACNGT 2 cut(s) 103, 272
TaqI TCGA 4 cut(s) 186, 219, 228, 254
TasI AATT 3 cut(s) 111, 201, 215
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 1 cut(s) 295
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 1 cut(s) 327
Tsp45I GTSAC 1 cut(s) 61
TspGWI ACGGA 2 cut(s) 279, 288
XapI RAATTY 2 cut(s) 111, 215
XceI RCATGY 2 cut(s) 240, 286
XhoI CTCGAG 1 cut(s) 185
XmnI GAANNNNTTC 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.