Rmu_sc0006175.1_g000021

Egg cell-secreted protein 1.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006175.1
OG0002420
Physical Location & Seq
Reverse (-)
64374 .. 64724
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006175.1_g000021.1.cds

Sequence Viewer

Length: 351 bp
atgtctagagtaactcaggcaatattctcactactaatggcaatatatgctgcaactgctctagcgcaagtgccaacctcaccatcacctcctccgattggcatattgccgaacccgaatgaagtagcaaaatgttggtcttcgcttgaaaatactcaagggtgtgtatgggagatttatgcctcggtgttttctggtaacctctctggaataggccctgcttgttgcaaggcattccttggaattgaagaaagctgctggccaaatatgttcccctcaaaccctttctttcctccattgcttcgaagcacttgtagtgctcgaaaggcaacacctccgggagggaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

116

Amino Acids

12.29

Weight (kDa)

7.55

Isoelectric Point (pI)

70.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 260
AfiI CCNNNNNNNGG 2 cut(s) 98, 341
AgsI TTSAA 2 cut(s) 149, 248
AluBI AGCT 1 cut(s) 255
AluI AGCT 1 cut(s) 255
Alw21I GWGCWC 1 cut(s) 322
AoxI GGCC 2 cut(s) 214, 260
ApeKI GCWGC 2 cut(s) 50, 255
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 1 cut(s) 215
AsuC2I CCSGG 1 cut(s) 339
AsuHPI GGTGA 2 cut(s) 72, 78
AsuII TTCGAA 1 cut(s) 304
BalI TGGCCA 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 322
BbvI GCAGC 2 cut(s) 37, 242
BccI CCATC 1 cut(s) 91
BcnI CCSGG 1 cut(s) 339
BfaI CTAG 2 cut(s) 6, 62
BisI GCNGC 2 cut(s) 51, 256
BlsI GCNGC 2 cut(s) 52, 257
Bme1390I CCNGG 1 cut(s) 339
BmgT120I GGNCC 1 cut(s) 215
BmrFI CCNGG 1 cut(s) 339
BpiI GAAGAC 1 cut(s) 132
Bpu14I TTCGAA 1 cut(s) 304
BpuEI CTTGAG 1 cut(s) 141
BpuMI CCSGG 1 cut(s) 339
BsaJI CCNNGG 2 cut(s) 183, 238
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 341
Bse3DI GCAATG 1 cut(s) 296
BseDI CCNNGG 2 cut(s) 183, 238
BseLI CCNNNNNNNGG 2 cut(s) 98, 341
BseMI GCAATG 1 cut(s) 296
BseMII CTCAG 1 cut(s) 29
BseRI GAGGAG 1 cut(s) 81
BseXI GCAGC 2 cut(s) 37, 242
BshFI GGCC 2 cut(s) 216, 262
BsiHKAI GWGCWC 1 cut(s) 322
BsiSI CCGG 1 cut(s) 338
BslI CCNNNNNNNGG 2 cut(s) 98, 341
BsmI GAATGC 1 cut(s) 233
BsnI GGCC 2 cut(s) 216, 262
Bsp119I TTCGAA 1 cut(s) 304
Bsp1286I GDGCHC 1 cut(s) 322
BspANI GGCC 2 cut(s) 216, 262
BspCNI CTCAG 1 cut(s) 28
BspT104I TTCGAA 1 cut(s) 304
BsrDI GCAATG 1 cut(s) 296
BssECI CCNNGG 2 cut(s) 183, 238
BssT1I CCWWGG 1 cut(s) 238
BstAPI GCANNNNNTGC 1 cut(s) 47
BstBI TTCGAA 1 cut(s) 304
BstC8I GCNNGC 1 cut(s) 260
BstDEI CTNAG 1 cut(s) 15
BstEII GGTNACC 1 cut(s) 197
BstENI CCTNNNNNAGG 1 cut(s) 339
BstHHI GCGC 1 cut(s) 67
BstMWI GCNNNNNNNGC 3 cut(s) 47, 56, 326
BstPI GGTNACC 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 337
BstV1I GCAGC 2 cut(s) 37, 242
BstV2I GAAGAC 1 cut(s) 132
BsuRI GGCC 2 cut(s) 216, 262
Cac8I GCNNGC 1 cut(s) 260
CfoI GCGC 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 215
CviJI RGCY 3 cut(s) 216, 255, 262
CviKI_1 RGCY 3 cut(s) 216, 255, 262
DdeI CTNAG 1 cut(s) 15
EaeI YGGCCR 1 cut(s) 260
Eco130I CCWWGG 1 cut(s) 238
Eco91I GGTNACC 1 cut(s) 197
EcoNI CCTNNNNNAGG 1 cut(s) 339
EcoO109I RGGNCCY 1 cut(s) 215
EcoO65I GGTNACC 1 cut(s) 197
EcoT14I CCWWGG 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 238
FaiI YATR 6 cut(s) 46, 48, 104, 169, 180, 269
Fnu4HI GCNGC 2 cut(s) 51, 256
Fsp4HI GCNGC 2 cut(s) 51, 256
FspBI CTAG 2 cut(s) 6, 62
GlaI GCGC 1 cut(s) 66
GluI GCNGC 2 cut(s) 51, 256
HaeIII GGCC 2 cut(s) 216, 262
HapII CCGG 1 cut(s) 338
HhaI GCGC 1 cut(s) 67
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HpaII CCGG 1 cut(s) 338
HphI GGTGA 2 cut(s) 72, 78
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 2 cut(s) 6, 207
HpyCH4V TGCA 2 cut(s) 53, 228
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 56, 326
HpyF3I CTNAG 1 cut(s) 15
HspAI GCGC 1 cut(s) 65
LpnPI CCDG 5 cut(s) 2, 180, 192, 231, 244
Lsp1109I GCAGC 2 cut(s) 37, 242
MaeI CTAG 2 cut(s) 6, 62
MaeIII GTNAC 2 cut(s) 10, 197
MboII GAAGA 2 cut(s) 132, 260
MhlI GDGCHC 1 cut(s) 322
MlsI TGGCCA 1 cut(s) 262
MluCI AATT 1 cut(s) 243
MluNI TGGCCA 1 cut(s) 262
MnlI CCTC 9 cut(s) 88, 99, 102, 193, 212, 286, 303, 335, 345
Mox20I TGGCCA 1 cut(s) 262
MscI TGGCCA 1 cut(s) 262
Msp20I TGGCCA 1 cut(s) 262
MspI CCGG 1 cut(s) 338
MspR9I CCNGG 1 cut(s) 339
Mva1269I GAATGC 1 cut(s) 233
MwoI GCNNNNNNNGC 3 cut(s) 47, 56, 326
NciI CCSGG 1 cut(s) 339
NspV TTCGAA 1 cut(s) 304
PctI GAATGC 1 cut(s) 233
PfoI TCCNGGA 1 cut(s) 337
PkrI GCNGC 2 cut(s) 52, 257
PspEI GGTNACC 1 cut(s) 197
PspPI GGNCC 1 cut(s) 215
SatI GCNGC 2 cut(s) 51, 256
Sau96I GGNCC 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 339
SduI GDGCHC 1 cut(s) 322
SetI ASST 5 cut(s) 80, 91, 204, 257, 337
SfuI TTCGAA 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
Sse9I AATT 1 cut(s) 243
SspI AATATT 1 cut(s) 24
SspMI CTAG 2 cut(s) 6, 62
StyD4I CCNGG 1 cut(s) 337
StyI CCWWGG 1 cut(s) 238
TaqI TCGA 2 cut(s) 304, 322
TasI AATT 1 cut(s) 243
TseI GCWGC 2 cut(s) 50, 255
TspDTI ATGAA 1 cut(s) 135
XagI CCTNNNNNAGG 1 cut(s) 339
XbaI TCTAGA 1 cut(s) 5
XspI CTAG 2 cut(s) 6, 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.