Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002420

Physical Location & Seq

Genomic Coordinates Reverse (-)

52895853 .. 52896830

Gene Structure 978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0413300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGTGAAGGTACTGGAAAACAAATGGTTGAGGGTGCATACTCGATCAGCCAATATGATAACTACGCGAAAAGGGAAGAGAGTTGGGACATCGTGGAAGGAGATGACGACCATGATCGTGATGATATGTCCGACACCACTTCGACGACATCGAATCGATCTACATATTCATCAGACTTTGTGGATGATGCATCTTCATCGGCATCGTCCTCGTGTTCTTCTTCCTTGCGTTCCGGTGGATCTCTGTACGACTTGTCAGATCTCATGGCCCAGTTGCCCATCAAGAGAGGGCTTTCTAAGTATTTTCAAGGCAAGAGTCAGTCTTTTACATTTTTATCAAAAGTGAATAGTATTGAAGATCTTGCAAAGAAAGAGACTCCGTATCAGAGATCAAAAGCACTAAAATCATGCAAGAGCTATGGTGGTGGCTTAGGTACCCAAAGATCATACACTCTAATTCCTAAGGCCACCATATCTAAAGTCAAGAAGGCCTCGAGAGGTCCTTTGTCATTTGCATCTCTTTCCAGTAGAAGAGGCGCCTCTTTAGGTATTATTAACAATAATGTCCCTACAGTTTCTGTAACGAAGAAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

198

Amino Acids

21.41

Weight (kDa)

9.1

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14378 AT2G27315 AT3G48675 AT4G35165 AT5G52965 AT5G52975 AT5G53742 AT5G53905 AT5G54062
malus_domestica	MD02G1018800.v1.1 MD09G1163700.v1.1 MD09G1164100.v1.1 MD09G1164600.v1.1 MD17G1163700.v1.1
pyrus_communis	pycom09g08120 pycom17g15680
rosa_chinensis	RchiOBHm_Chr1g0323971 RchiOBHm_Chr2g0149601
rosa_laevigata	RLG00000020428 RLG00000030237
rosa_multiflora	Rmu_sc0002529.1_g000027 Rmu_sc0006175.1_g000021 Rmu_sc0006867.1_g000025
rosa_roxburghii	Rroxscaffold_2G00097920 Rroxscaffold_2G00097930 Rroxscaffold_4G00326000 Rroxscaffold_4G00326030
rosa_rugosa	Rorug01G0040900 Rorug02G0412900.1 Rorug02G0413000 Rorug02G0413200 Rorug02G0413300
rosa_samantha	Rh1AG058800 Rh1DG064700 Rh2AG473400 Rh2AG473500 Rh2BG485300 Rh2CG459100 Rh2CG459200 Rh2DG494500
rosa_wichuraiana	Rw2G038600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	434
AccB1I	GGYRCC	2 cut(s)	434, 536
AccII	CGCG	1 cut(s)	68
AclWI	GGATC	1 cut(s)	247
AcyI	GRCGYC	1 cut(s)	537
AfaI	GTAC	3 cut(s)	13, 248, 436
AgsI	TTSAA	2 cut(s)	308, 356
AluBI	AGCT	1 cut(s)	417
AluI	AGCT	1 cut(s)	417
Alw26I	GTCTC	1 cut(s)	368
AlwI	GGATC	1 cut(s)	247
AlwNI	CAGNNNCTG	1 cut(s)	578
Ama87I	CYCGRG	1 cut(s)	493
AoxI	GGCC	3 cut(s)	267, 465, 489
Asp718I	GGTACC	1 cut(s)	434
AspLEI	GCGC	1 cut(s)	539
AspS9I	GGNCC	2 cut(s)	268, 500
AsuHPI	GGTGA	1 cut(s)	17
AvaI	CYCGRG	1 cut(s)	493
AvaII	GGWCC	1 cut(s)	500
AxyI	CCTNAGG	1 cut(s)	462
BanI	GGYRCC	2 cut(s)	434, 536
BauI	CACGAG	1 cut(s)	211
BccI	CCATC	1 cut(s)	287
BcgI	CGANNNNNNTGC	4 cut(s)	180, 192, 214, 226
BcoDI	GTCTC	1 cut(s)	368
BfmI	CTRYAG	1 cut(s)	570
BfoI	RGCGCY	1 cut(s)	540
BglII	AGATCT	2 cut(s)	259, 358
Bme18I	GGWCC	1 cut(s)	500
BmeT110I	CYCGRG	1 cut(s)	493
BmgT120I	GGNCC	2 cut(s)	268, 500
BmiI	GGNNCC	2 cut(s)	436, 538
BmrI	ACTGGG	1 cut(s)	265
BmsI	GCATC	4 cut(s)	178, 200, 212, 524
BmuI	ACTGGG	1 cut(s)	265
Bpu10I	CCTNAGC	1 cut(s)	430
Bsa29I	ATCGAT	1 cut(s)	157
BsaHI	GRCGYC	1 cut(s)	537
BsaWI	WCCGGW	1 cut(s)	233
Bse1I	ACTGG	3 cut(s)	19, 271, 525
Bse21I	CCTNAGG	1 cut(s)	462
BseCI	ATCGAT	1 cut(s)	157
BseGI	GGATG	1 cut(s)	190
BseNI	ACTGG	3 cut(s)	19, 271, 525
Bsh1236I	CGCG	1 cut(s)	68
BshFI	GGCC	3 cut(s)	269, 467, 491
BshNI	GGYRCC	2 cut(s)	434, 536
BshVI	ATCGAT	1 cut(s)	157
BsiHKCI	CYCGRG	1 cut(s)	493
BsiSI	CCGG	1 cut(s)	234
BslFI	GGGAC	2 cut(s)	101, 551
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	2 cut(s)	101, 551
BsnI	GGCC	3 cut(s)	269, 467, 491
BsoBI	CYCGRG	1 cut(s)	493
Bsp143I	GATC	8 cut(s)	45, 115, 158, 239, 259, 358, 389, 443
BspANI	GGCC	3 cut(s)	269, 467, 491
BspDI	ATCGAT	1 cut(s)	157
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	2 cut(s)	436, 538
BspPI	GGATC	1 cut(s)	247
BspT107I	GGYRCC	2 cut(s)	434, 536
BsrI	ACTGG	3 cut(s)	19, 271, 525
BssMI	GATC	8 cut(s)	45, 115, 158, 239, 259, 358, 389, 443
BssNI	GRCGYC	1 cut(s)	537
BssSI	CACGAG	1 cut(s)	211
Bst2BI	CACGAG	1 cut(s)	211
Bst4CI	ACNGT	1 cut(s)	574
Bst6I	CTCTTC	2 cut(s)	72, 526
BstACI	GRCGYC	1 cut(s)	537
BstDEI	CTNAG	3 cut(s)	297, 430, 462
BstF5I	GGATG	1 cut(s)	190
BstFNI	CGCG	1 cut(s)	68
BstH2I	RGCGCY	1 cut(s)	540
BstHHI	GCGC	1 cut(s)	539
BstKTI	GATC	8 cut(s)	48, 118, 161, 242, 262, 361, 392, 446
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	8 cut(s)	45, 115, 158, 239, 259, 358, 389, 443
BstSFI	CTRYAG	1 cut(s)	570
BstUI	CGCG	1 cut(s)	68
BstX2I	RGATCY	3 cut(s)	239, 259, 358
BstYI	RGATCY	3 cut(s)	239, 259, 358
Bsu15I	ATCGAT	1 cut(s)	157
Bsu36I	CCTNAGG	1 cut(s)	462
BsuRI	GGCC	3 cut(s)	269, 467, 491
BsuTUI	ATCGAT	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	190
CaiI	CAGNNNCTG	1 cut(s)	578
CfoI	GCGC	1 cut(s)	539
Cfr13I	GGNCC	2 cut(s)	268, 500
ClaI	ATCGAT	1 cut(s)	157
Csp6I	GTAC	3 cut(s)	12, 247, 435
CviAII	CATG	3 cut(s)	113, 265, 408
CviJI	RGCY	7 cut(s)	51, 269, 292, 417, 429, 467, 491
CviKI_1	RGCY	7 cut(s)	51, 269, 292, 417, 429, 467, 491
CviQI	GTAC	3 cut(s)	12, 247, 435
DdeI	CTNAG	3 cut(s)	297, 430, 462
DinI	GGCGCC	1 cut(s)	538
DpnI	GATC	8 cut(s)	47, 117, 160, 241, 261, 360, 391, 445
DpnII	GATC	8 cut(s)	45, 115, 158, 239, 259, 358, 389, 443
Eam1104I	CTCTTC	2 cut(s)	72, 526
EarI	CTCTTC	2 cut(s)	72, 526
Eco147I	AGGCCT	1 cut(s)	491
Eco47I	GGWCC	1 cut(s)	500
Eco81I	CCTNAGG	1 cut(s)	462
Eco88I	CYCGRG	1 cut(s)	493
EcoO109I	RGGNCCY	1 cut(s)	500
EcoT22I	ATGCAT	1 cut(s)	193
EgeI	GGCGCC	1 cut(s)	538
EheI	GGCGCC	1 cut(s)	538
FaeI	CATG	3 cut(s)	116, 268, 411
FaqI	GGGAC	2 cut(s)	101, 551
FatI	CATG	3 cut(s)	112, 264, 407
FokI	GGATG	1 cut(s)	197
GlaI	GCGC	1 cut(s)	538
HaeII	RGCGCY	1 cut(s)	540
HaeIII	GGCC	3 cut(s)	269, 467, 491
HapII	CCGG	1 cut(s)	234
HhaI	GCGC	1 cut(s)	539
Hin1I	GRCGYC	1 cut(s)	537
Hin1II	CATG	3 cut(s)	116, 268, 411
Hin6I	GCGC	1 cut(s)	537
HinP1I	GCGC	1 cut(s)	537
HinfI	GANTC	3 cut(s)	154, 316, 376
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	1 cut(s)	17
Hpy188I	TCNGA	4 cut(s)	133, 175, 259, 387
Hpy188III	TCNNGA	4 cut(s)	119, 283, 484, 495
Hpy99I	CGWCG	1 cut(s)	148
HpyAV	CCTTC	2 cut(s)	92, 481
HpyCH4III	ACNGT	1 cut(s)	574
HpyCH4V	TGCA	5 cut(s)	38, 191, 365, 411, 515
HpyF3I	CTNAG	3 cut(s)	297, 430, 462
Hsp92I	GRCGYC	1 cut(s)	537
Hsp92II	CATG	3 cut(s)	116, 268, 411
HspAI	GCGC	1 cut(s)	537
KasI	GGCGCC	1 cut(s)	536
KpnI	GGTACC	1 cut(s)	438
Kzo9I	GATC	8 cut(s)	45, 115, 158, 239, 259, 358, 389, 443
LpnPI	CCDG	3 cut(s)	247, 284, 538
LweI	GCATC	4 cut(s)	178, 200, 212, 524
MaeIII	GTNAC	1 cut(s)	580
MalI	GATC	8 cut(s)	47, 117, 160, 241, 261, 360, 391, 445
MboI	GATC	8 cut(s)	45, 115, 158, 239, 259, 358, 389, 443
MboII	GAAGA	6 cut(s)	89, 186, 210, 213, 368, 543
MflI	RGATCY	3 cut(s)	239, 259, 358
MluCI	AATT	1 cut(s)	456
Mly113I	GGCGCC	1 cut(s)	537
MlyI	GAGTC	2 cut(s)	325, 370
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	7 cut(s)	25, 220, 281, 491, 502, 527, 550
Mph1103I	ATGCAT	1 cut(s)	193
MseI	TTAA	2 cut(s)	555, 595
MslI	CAYNNNNRTG	1 cut(s)	117
MspI	CCGG	1 cut(s)	234
MvnI	CGCG	1 cut(s)	68
NarI	GGCGCC	1 cut(s)	537
NdeII	GATC	8 cut(s)	45, 115, 158, 239, 259, 358, 389, 443
NlaIII	CATG	3 cut(s)	116, 268, 411
NlaIV	GGNNCC	2 cut(s)	436, 538
NsiI	ATGCAT	1 cut(s)	193
PaeR7I	CTCGAG	1 cut(s)	493
PceI	AGGCCT	1 cut(s)	491
PcsI	WCGNNNNNNNCGW	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	154
PleI	GAGTC	2 cut(s)	324, 370
PluTI	GGCGCC	1 cut(s)	540
PpsI	GAGTC	2 cut(s)	324, 370
PpuMI	RGGWCCY	1 cut(s)	500
Psp5II	RGGWCCY	1 cut(s)	500
PspN4I	GGNNCC	2 cut(s)	436, 538
PspPI	GGNCC	2 cut(s)	268, 500
PspPPI	RGGWCCY	1 cut(s)	500
PstNI	CAGNNNCTG	1 cut(s)	578
PsuI	RGATCY	3 cut(s)	239, 259, 358
RsaI	GTAC	3 cut(s)	13, 248, 436
RsaNI	GTAC	3 cut(s)	12, 247, 435
RseI	CAYNNNNRTG	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	555, 595
Sau3AI	GATC	8 cut(s)	45, 115, 158, 239, 259, 358, 389, 443
Sau96I	GGNCC	2 cut(s)	268, 500
SchI	GAGTC	2 cut(s)	325, 370
SetI	ASST	5 cut(s)	13, 419, 436, 502, 550
SfaNI	GCATC	4 cut(s)	178, 200, 212, 524
SfcI	CTRYAG	1 cut(s)	570
SfoI	GGCGCC	1 cut(s)	538
Sfr274I	CTCGAG	1 cut(s)	493
SinI	GGWCC	1 cut(s)	500
SlaI	CTCGAG	1 cut(s)	493
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	493
SmoI	CTYRAG	1 cut(s)	493
Sse9I	AATT	1 cut(s)	456
SseBI	AGGCCT	1 cut(s)	491
SspDI	GGCGCC	1 cut(s)	536
StuI	AGGCCT	1 cut(s)	491
TaaI	ACNGT	1 cut(s)	574
TaqI	TCGA	5 cut(s)	44, 143, 152, 157, 494
TasI	AATT	1 cut(s)	456
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	2 cut(s)	555, 595
Tru9I	TTAA	2 cut(s)	555, 595
TspDTI	ATGAA	2 cut(s)	159, 186
TspGWI	ACGGA	1 cut(s)	369
VpaK11BI	GGWCC	1 cut(s)	500
XhoI	CTCGAG	1 cut(s)	493
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.