RchiOBHm_Chr2g0149601

Egg cell-secreted protein 1.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002420
Physical Location & Seq
Reverse (-)
67430116 .. 67430493
378 bp
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UTR
Exon/CDS
Intron
PRQ51900

Sequence Viewer

Length: 378 bp
ATGTCTAGAGCAGCTCAAGTGATATTTTGCCTAGTGCTAATGGCAACATGCGCCGCAACCGGGCTAGTGCATCAGCCACTCCTAGCATCACCTCCCCTCATTAACATTCCAGGCCTATTGCCGCCAGGGTTCCCCGGCCTACTGCCACCAACAAACCCAAATGACATAGCAAAGTGTTGGTCTTCACTTCGGAACATTCAAGGGTGTGTATCGGAAATCTTTACCTCAATCTTTACTCACAAAATAGAAGTAAGCCCTGCCTGTTGTAAAGCTTTCCTTGCAATTGAAGAGAGTTGCTGGCCGAAAATGTTCCCCTTAACTCCTTTCTTTGCGCCATTGCTCAAGAACACTTGTGCTCAGAAGGCGGCTCTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

125

Amino Acids

13.42

Weight (kDa)

8.48

Isoelectric Point (pI)

75.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 58 - 118 1.3e-17 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 54, 122, 365
AcoI YGGCCR 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 60
AgsI TTSAA 2 cut(s) 200, 287
AjnI CCWGG 2 cut(s) 109, 124
AluBI AGCT 2 cut(s) 14, 272
AluI AGCT 2 cut(s) 14, 272
Alw21I GWGCWC 1 cut(s) 358
AoxI GGCC 3 cut(s) 112, 136, 299
ApeKI GCWGC 1 cut(s) 11
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
Asp700I GAANNNNTTC 1 cut(s) 308
AspLEI GCGC 2 cut(s) 53, 334
AsuC2I CCSGG 2 cut(s) 61, 135
AsuHPI GGTGA 1 cut(s) 81
BbsI GAAGAC 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 358
BbvI GCAGC 1 cut(s) 23
BciT130I CCWGG 2 cut(s) 111, 126
BcnI CCSGG 2 cut(s) 61, 135
BfaI CTAG 4 cut(s) 6, 32, 65, 83
BisI GCNGC 4 cut(s) 12, 54, 122, 366
BlsI GCNGC 4 cut(s) 13, 55, 123, 367
Bme1390I CCNGG 4 cut(s) 61, 111, 126, 135
BmiI GGNNCC 1 cut(s) 131
BmrFI CCNGG 4 cut(s) 61, 111, 126, 135
BmsI GCATC 2 cut(s) 79, 95
BpiI GAAGAC 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 2 cut(s) 61, 135
BsaJI CCNNGG 2 cut(s) 125, 133
Bsc4I CCNNNNNNNGG 1 cut(s) 60
Bse3DI GCAATG 1 cut(s) 335
BseBI CCWGG 2 cut(s) 111, 126
BseDI CCNNGG 2 cut(s) 125, 133
BseLI CCNNNNNNNGG 1 cut(s) 60
BseMI GCAATG 1 cut(s) 335
BseMII CTCAG 1 cut(s) 371
BseXI GCAGC 1 cut(s) 23
BshFI GGCC 3 cut(s) 114, 138, 301
BsiHKAI GWGCWC 1 cut(s) 358
BsiSI CCGG 2 cut(s) 60, 135
BslI CCNNNNNNNGG 1 cut(s) 60
BsnI GGCC 3 cut(s) 114, 138, 301
Bsp1286I GDGCHC 1 cut(s) 358
BspACI CCGC 3 cut(s) 54, 122, 365
BspANI GGCC 3 cut(s) 114, 138, 301
BspCNI CTCAG 1 cut(s) 370
BspLI GGNNCC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 335
BssECI CCNNGG 2 cut(s) 125, 133
Bst2UI CCWGG 2 cut(s) 111, 126
Bst6I CTCTTC 1 cut(s) 282
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 1 cut(s) 357
BstHHI GCGC 2 cut(s) 53, 334
BstMWI GCNNNNNNNGC 3 cut(s) 50, 278, 362
BstNI CCWGG 2 cut(s) 111, 126
BstNSI RCATGY 1 cut(s) 51
BstSCI CCNGG 4 cut(s) 59, 109, 124, 133
BstV1I GCAGC 1 cut(s) 23
BstV2I GAAGAC 1 cut(s) 174
BsuRI GGCC 3 cut(s) 114, 138, 301
Cac8I GCNNGC 1 cut(s) 299
CfoI GCGC 2 cut(s) 53, 334
CviAII CATG 1 cut(s) 48
CviJI RGCY 9 cut(s) 14, 64, 76, 114, 138, 255, 272, 301, 368
CviKI_1 RGCY 9 cut(s) 14, 64, 76, 114, 138, 255, 272, 301, 368
DdeI CTNAG 1 cut(s) 357
EaeI YGGCCR 1 cut(s) 299
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco147I AGGCCT 1 cut(s) 114
EcoRII CCWGG 2 cut(s) 109, 124
FaeI CATG 1 cut(s) 51
FaiI YATR 2 cut(s) 49, 167
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FatI CATG 1 cut(s) 47
Fnu4HI GCNGC 4 cut(s) 12, 54, 122, 366
Fsp4HI GCNGC 4 cut(s) 12, 54, 122, 366
FspBI CTAG 4 cut(s) 6, 32, 65, 83
GlaI GCGC 2 cut(s) 52, 333
GluI GCNGC 4 cut(s) 12, 54, 122, 366
HaeIII GGCC 3 cut(s) 114, 138, 301
HapII CCGG 2 cut(s) 60, 135
HhaI GCGC 2 cut(s) 53, 334
Hin1II CATG 1 cut(s) 51
Hin6I GCGC 2 cut(s) 51, 332
HinP1I GCGC 2 cut(s) 51, 332
HindIII AAGCTT 1 cut(s) 270
HpaII CCGG 2 cut(s) 60, 135
HphI GGTGA 1 cut(s) 81
Hpy188I TCNGA 3 cut(s) 192, 214, 360
Hpy188III TCNNGA 2 cut(s) 6, 343
HpyAV CCTTC 1 cut(s) 355
HpyCH4V TGCA 2 cut(s) 70, 281
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 278, 362
HpyF3I CTNAG 1 cut(s) 357
Hsp92II CATG 1 cut(s) 51
HspAI GCGC 2 cut(s) 51, 332
LpnPI CCDG 9 cut(s) 73, 96, 111, 123, 138, 148, 270, 274, 283
Lsp1109I GCAGC 1 cut(s) 23
LweI GCATC 2 cut(s) 79, 95
MaeI CTAG 4 cut(s) 6, 32, 65, 83
MboII GAAGA 2 cut(s) 174, 299
MfeI CAATTG 1 cut(s) 282
MhlI GDGCHC 1 cut(s) 358
MluCI AATT 1 cut(s) 282
MnlI CCTC 3 cut(s) 102, 107, 235
MroXI GAANNNNTTC 1 cut(s) 308
MseI TTAA 3 cut(s) 102, 317, 376
MspI CCGG 2 cut(s) 60, 135
MspR9I CCNGG 4 cut(s) 61, 111, 126, 135
MunI CAATTG 1 cut(s) 282
MvaI CCWGG 2 cut(s) 111, 126
MwoI GCNNNNNNNGC 3 cut(s) 50, 278, 362
NciI CCSGG 2 cut(s) 61, 135
NlaIII CATG 1 cut(s) 51
NlaIV GGNNCC 1 cut(s) 131
NspI RCATGY 1 cut(s) 51
PceI AGGCCT 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 308
PkrI GCNGC 4 cut(s) 13, 55, 123, 367
Psp6I CCWGG 2 cut(s) 109, 124
PspGI CCWGG 2 cut(s) 109, 124
PspN4I GGNNCC 1 cut(s) 131
SaqAI TTAA 3 cut(s) 102, 317, 376
SatI GCNGC 4 cut(s) 12, 54, 122, 366
ScrFI CCNGG 4 cut(s) 61, 111, 126, 135
SduI GDGCHC 1 cut(s) 358
SetI ASST 4 cut(s) 16, 94, 227, 274
SfaNI GCATC 2 cut(s) 79, 95
SmlI CTYRAG 2 cut(s) 15, 341
SmoI CTYRAG 2 cut(s) 15, 341
Sse9I AATT 1 cut(s) 282
SseBI AGGCCT 1 cut(s) 114
SsiI CCGC 3 cut(s) 54, 122, 365
SspMI CTAG 4 cut(s) 6, 32, 65, 83
StuI AGGCCT 1 cut(s) 114
StyD4I CCNGG 4 cut(s) 59, 109, 124, 133
TasI AATT 1 cut(s) 282
TauI GCSGC 3 cut(s) 56, 124, 368
Tru1I TTAA 3 cut(s) 102, 317, 376
Tru9I TTAA 3 cut(s) 102, 317, 376
TseI GCWGC 1 cut(s) 11
XbaI TCTAGA 1 cut(s) 5
XceI RCATGY 1 cut(s) 51
XmnI GAANNNNTTC 1 cut(s) 308
XspI CTAG 4 cut(s) 6, 32, 65, 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.