Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002420

Physical Location & Seq

Genomic Coordinates Reverse (-)

64875834 .. 64876930

Gene Structure 1097 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020428

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTCTAGAGCAGCTCAAGCGATATTTTGCCTCGTGCTAATGGCAACATGCGCTGCAACCGGGCTAGCGCAACAGCCACCCCAACCACCACCTCCCCCCTTTAACATTCCAGGCCTATTGCCACCAGGGTTCCCCGGCCTACTGCCGCCAACAAACCCAAATGACATAGCAAAGTGTTGGTCTTCACTTCGGAACATTCAAGGGTGTGTATCGGAAATCTTTACCTCAATCTTTACTCACAAAATAGAGTACTATGGTCGCGGCTGTTTTAGTGTTGCTAATCCCTTAACAGTGAGGGTGCTCGTTTCATATTTCGATCTCGAAAGAGAGCTGTTGCAAAAGTTGCCATCTCTTCATGATTTCTATTTTGATTATAAAGAAATGCAATTAGGCCTCGGAGTCTTGGATGGTCGGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

140

Amino Acids

15.38

Weight (kDa)

6.7

Isoelectric Point (pI)

61.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14378 AT2G27315 AT3G48675 AT4G35165 AT5G52965 AT5G52975 AT5G53742 AT5G53905 AT5G54062
malus_domestica	MD02G1018800.v1.1 MD09G1163700.v1.1 MD09G1164100.v1.1 MD09G1164600.v1.1 MD17G1163700.v1.1
pyrus_communis	pycom09g08120 pycom17g15680
rosa_chinensis	RchiOBHm_Chr1g0323971 RchiOBHm_Chr2g0149601
rosa_laevigata	RLG00000020428 RLG00000030237
rosa_multiflora	Rmu_sc0002529.1_g000027 Rmu_sc0006175.1_g000021 Rmu_sc0006867.1_g000025
rosa_roxburghii	Rroxscaffold_2G00097920 Rroxscaffold_2G00097930 Rroxscaffold_4G00326000 Rroxscaffold_4G00326030
rosa_rugosa	Rorug01G0040900 Rorug02G0412900.1 Rorug02G0413000 Rorug02G0413200 Rorug02G0413300
rosa_samantha	Rh1AG058800 Rh1DG064700 Rh2AG473400 Rh2AG473500 Rh2BG485300 Rh2CG459100 Rh2CG459200 Rh2DG494500
rosa_wichuraiana	Rw2G038600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	375
AccII	CGCG	1 cut(s)	261
AciI	CCGC	2 cut(s)	146, 261
AfaI	GTAC	1 cut(s)	251
AgsI	TTSAA	1 cut(s)	200
AjnI	CCWGG	2 cut(s)	109, 124
AluBI	AGCT	2 cut(s)	14, 331
AluI	AGCT	2 cut(s)	14, 331
Alw21I	GWGCWC	1 cut(s)	303
AoxI	GGCC	3 cut(s)	112, 136, 391
ApeKI	GCWGC	2 cut(s)	11, 53
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AspLEI	GCGC	2 cut(s)	53, 70
AsuC2I	CCSGG	2 cut(s)	61, 135
AsuNHI	GCTAGC	1 cut(s)	64
BauI	CACGAG	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	2 cut(s)	23, 40
BccI	CCATC	2 cut(s)	355, 401
BciT130I	CCWGG	2 cut(s)	111, 126
BcnI	CCSGG	2 cut(s)	61, 135
BfaI	CTAG	2 cut(s)	6, 65
BisI	GCNGC	4 cut(s)	12, 54, 146, 262
BlsI	GCNGC	4 cut(s)	13, 55, 147, 263
BmcAI	AGTACT	1 cut(s)	251
Bme1390I	CCNGG	4 cut(s)	61, 111, 126, 135
BmiI	GGNNCC	1 cut(s)	131
BmrFI	CCNGG	4 cut(s)	61, 111, 126, 135
BmtI	GCTAGC	1 cut(s)	68
BpiI	GAAGAC	1 cut(s)	174
BpuMI	CCSGG	2 cut(s)	61, 135
BsaJI	CCNNGG	3 cut(s)	125, 133, 394
BseBI	CCWGG	2 cut(s)	111, 126
BseDI	CCNNGG	3 cut(s)	125, 133, 394
BseGI	GGATG	1 cut(s)	412
BseXI	GCAGC	2 cut(s)	23, 40
Bsh1236I	CGCG	1 cut(s)	261
BshFI	GGCC	3 cut(s)	114, 138, 393
BsiHKAI	GWGCWC	1 cut(s)	303
BsiSI	CCGG	2 cut(s)	60, 135
BsnI	GGCC	3 cut(s)	114, 138, 393
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	1 cut(s)	316
BspACI	CCGC	2 cut(s)	146, 261
BspANI	GGCC	3 cut(s)	114, 138, 393
BspFNI	CGCG	1 cut(s)	261
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	131
BspOI	GCTAGC	1 cut(s)	68
BssECI	CCNNGG	3 cut(s)	125, 133, 394
BssMI	GATC	1 cut(s)	316
BssSI	CACGAG	1 cut(s)	32
Bst2BI	CACGAG	1 cut(s)	32
Bst2UI	CCWGG	2 cut(s)	111, 126
Bst4CI	ACNGT	1 cut(s)	292
Bst6I	CTCTTC	1 cut(s)	357
BstAPI	GCANNNNNTGC	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	412
BstFNI	CGCG	1 cut(s)	261
BstHHI	GCGC	2 cut(s)	53, 70
BstKTI	GATC	1 cut(s)	319
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 50, 343
BstNI	CCWGG	2 cut(s)	111, 126
BstNSI	RCATGY	1 cut(s)	51
BstSCI	CCNGG	4 cut(s)	59, 109, 124, 133
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	2 cut(s)	23, 40
BstV2I	GAAGAC	1 cut(s)	174
BsuRI	GGCC	3 cut(s)	114, 138, 393
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	1 cut(s)	66
CciI	TCATGA	1 cut(s)	355
CfoI	GCGC	2 cut(s)	53, 70
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	2 cut(s)	48, 356
CviJI	RGCY	8 cut(s)	14, 64, 76, 114, 138, 264, 331, 393
CviKI_1	RGCY	8 cut(s)	14, 64, 76, 114, 138, 264, 331, 393
CviQI	GTAC	1 cut(s)	250
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco147I	AGGCCT	2 cut(s)	114, 393
EcoRII	CCWGG	2 cut(s)	109, 124
FaeI	CATG	2 cut(s)	51, 359
FaiI	YATR	6 cut(s)	49, 167, 255, 310, 357, 375
FatI	CATG	2 cut(s)	47, 355
Fnu4HI	GCNGC	4 cut(s)	12, 54, 146, 262
Fsp4HI	GCNGC	4 cut(s)	12, 54, 146, 262
FspBI	CTAG	2 cut(s)	6, 65
GlaI	GCGC	2 cut(s)	52, 69
GluI	GCNGC	4 cut(s)	12, 54, 146, 262
HaeIII	GGCC	3 cut(s)	114, 138, 393
HapII	CCGG	2 cut(s)	60, 135
HhaI	GCGC	2 cut(s)	53, 70
Hin1II	CATG	2 cut(s)	51, 359
Hin6I	GCGC	2 cut(s)	51, 68
HinP1I	GCGC	2 cut(s)	51, 68
HinfI	GANTC	1 cut(s)	399
HpaII	CCGG	2 cut(s)	60, 135
Hpy188I	TCNGA	3 cut(s)	192, 214, 398
Hpy188III	TCNNGA	3 cut(s)	6, 320, 356
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4V	TGCA	3 cut(s)	56, 337, 385
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 50, 343
Hsp92II	CATG	2 cut(s)	51, 359
HspAI	GCGC	2 cut(s)	51, 68
Kzo9I	GATC	1 cut(s)	316
LpnPI	CCDG	6 cut(s)	73, 96, 111, 123, 138, 148
Lsp1109I	GCAGC	2 cut(s)	23, 40
MaeI	CTAG	2 cut(s)	6, 65
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	2 cut(s)	174, 344
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	1 cut(s)	386
MlyI	GAGTC	1 cut(s)	408
MnlI	CCTC	5 cut(s)	41, 102, 235, 288, 404
MseI	TTAA	2 cut(s)	102, 287
MspI	CCGG	2 cut(s)	60, 135
MspR9I	CCNGG	4 cut(s)	61, 111, 126, 135
MvaI	CCWGG	2 cut(s)	111, 126
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	3 cut(s)	17, 50, 343
NciI	CCSGG	2 cut(s)	61, 135
NdeII	GATC	1 cut(s)	316
NheI	GCTAGC	1 cut(s)	64
NlaIII	CATG	2 cut(s)	51, 359
NlaIV	GGNNCC	1 cut(s)	131
NspI	RCATGY	1 cut(s)	51
PagI	TCATGA	1 cut(s)	355
PceI	AGGCCT	2 cut(s)	114, 393
PkrI	GCNGC	4 cut(s)	13, 55, 147, 263
PleI	GAGTC	1 cut(s)	407
PpsI	GAGTC	1 cut(s)	407
PsiI	TTATAA	1 cut(s)	375
Psp6I	CCWGG	2 cut(s)	109, 124
PspGI	CCWGG	2 cut(s)	109, 124
PspN4I	GGNNCC	1 cut(s)	131
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SaqAI	TTAA	2 cut(s)	102, 287
SatI	GCNGC	4 cut(s)	12, 54, 146, 262
Sau3AI	GATC	1 cut(s)	316
ScaI	AGTACT	1 cut(s)	251
SchI	GAGTC	1 cut(s)	408
ScrFI	CCNGG	4 cut(s)	61, 111, 126, 135
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	4 cut(s)	16, 94, 227, 333
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
Sse9I	AATT	1 cut(s)	386
SseBI	AGGCCT	2 cut(s)	114, 393
SsiI	CCGC	2 cut(s)	146, 261
SspMI	CTAG	2 cut(s)	6, 65
StuI	AGGCCT	2 cut(s)	114, 393
StyD4I	CCNGG	4 cut(s)	59, 109, 124, 133
TaaI	ACNGT	1 cut(s)	292
TaqI	TCGA	2 cut(s)	315, 321
TasI	AATT	1 cut(s)	386
TatI	WGTACW	1 cut(s)	249
TauI	GCSGC	2 cut(s)	148, 264
Tru1I	TTAA	2 cut(s)	102, 287
Tru9I	TTAA	2 cut(s)	102, 287
TscAI	CASTG	1 cut(s)	297
TseI	GCWGC	2 cut(s)	11, 53
TspDTI	ATGAA	2 cut(s)	297, 344
TspRI	CASTG	1 cut(s)	297
XbaI	TCTAGA	1 cut(s)	5
XceI	RCATGY	1 cut(s)	51
XspI	CTAG	2 cut(s)	6, 65
ZrmI	AGTACT	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.