Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004413

Physical Location & Seq

Genomic Coordinates Reverse (-)

7709192 .. 7711151

Gene Structure 1960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G17750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGATGATTGCTCGTTTTGTGCTCAGCATTCTAATCGTAGCGGCGATAGTTTCTGGTAGTGAGTTTTCTGATACTCGTGATGCAAAAGTAGAAAAAATCTTAAAGAAACTCAACAAACCTGCTCTTAAATCTATCAAGAGTCCAGATGGAGATATAATAGACTGCGTTCATATGAATAATCATCCAATTTATGATCATCCTTTATTCAAAAACTACACGATTCAGATGAAACCAAGTTCTTACCCTAAAGGTAAAAATAATGAATCTTCAGACAAAGAGAAACAAAGTGTTGTGACTCAACTATGGACAGTTAACGGGAAATGCCCCAAAAACAGTATTCCGATCAGAAGAACGAGAAGAAAAGAAATTTTGCGAACCGAATATATGCAAAGATATGACAAAAAGAATCCAAACATAATAAATCATCCTAAAGCATCAACTAGTAACTCCATACATGAGTACGCGCAAATCCAAGCGAAAGGAAAGTTTCATGGAGCCCATGCGGATATAAATGTTTGGAAACCTTTTGTACAAACACCAAAAGAGTTTAGCCTAGCACAAATGTGGGTTATGGCTGGTCCGTTTTCTGAAGTTAATAGCGTTGAAGCTGGTTGGCAGGTGTATCAAGATCGTTATGGCGATGACAACCCAAGATACTTTATTTTTTGGACTGCGGATGGGTACCACTCAGGCTGTTACAATCTTGATTGCCAAGGATTTGTTCCTGTCAGCCAAAAATTTGCCCTTGGTGCAGCCGTTAGCAATGTTTCCACCTTCGATGGTCAACAATACCATATTTCCACAACTATATGGAAGGATCCAAATTCAGGGAATTGGTGGTTAAAATTTGGTGATGAATTTGTCGGATATTGGCCTTCCATATTGTTCAACCATCTAAAAGATGGTGCGACAGAAATTCAGTGGGGAGGTGAAATAATAAATTTTAAAGATGGTGCACTACACACCACGACGAGAATGGGGAGTGGACATTTTGCAGAGTCTGGATATCAAAAAGCAAGTTATTTCAAGGATGTTGAGATAATTGATGAACGTGATATTCATAGTAGTCCTAAAGAAGGTTATTCTTATATGACGCAAGAGAGTTGTTATAACATCAGGTCTGGCTATGCTAAAGTATGGGGAGTTTATTTTTATTATGGTGGCCCAGGTCGAAATCTGAATTGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

396

Amino Acids

45.21

Weight (kDa)

8.84

Isoelectric Point (pI)

31.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Neprosin_AP	PF14365	44 - 157	9.8e-40	Neprosin activation peptide
Neprosin	PF03080	181 - 389	3.2e-78	Neprosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17750 AT2G44220 AT2G44240
fragaria_vesca	FvH4_6g32790
malus_domestica	MD09G1198100.v1.1
prunus_persica	Prupe.3G054100_v2.0.a1 Prupe.3G054200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0141911 RchiOBHm_Chr2g0141931 RchiOBHm_Chr2g0141971
rosa_laevigata	RLG00000019942
rosa_multiflora	Rmu_co8265735.1_g000001 Rmu_co8330971.1_g000001 Rmu_sc0001287.1_g000036 Rmu_sc0004757.1_g000021 Rmu_sc0009946.1_g000003 Rmu_sc0009946.1_g000009
rosa_roxburghii	Rroxscaffold_2G00103690 Rroxscaffold_2G00103720
rosa_rugosa	Rorug02G0369200 Rorug02G0369300 Rorug02G0369400
rosa_samantha	Rh2AG421400 Rh2AG421600 Rh2AG421700 Rh2AG422100 Rh2BG431900 Rh2CG408700 Rh2CG408900 Rh2DG441900
rosa_wichuraiana	Rw2G034570 Rw2G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1110
AarI	CACCTGC	1 cut(s)	607
Acc36I	ACCTGC	2 cut(s)	127, 607
Acc65I	GGTACC	1 cut(s)	681
AccB1I	GGYRCC	1 cut(s)	681
AccII	CGCG	1 cut(s)	464
AciI	CCGC	3 cut(s)	41, 503, 674
AclWI	GGATC	2 cut(s)	812, 825
AcsI	RAATTY	7 cut(s)	366, 737, 823, 845, 857, 915, 940
AcuI	CTGAAG	2 cut(s)	252, 609
AfaI	GTAC	3 cut(s)	461, 531, 683
AfiI	CCNNNNNNNGG	2 cut(s)	827, 1076
AgsI	TTSAA	4 cut(s)	208, 605, 889, 1027
AhlI	ACTAGT	1 cut(s)	440
AjnI	CCWGG	1 cut(s)	1165
AjuI	GAANNNNNNNTTGG	2 cut(s)	705, 737
AleI	CACNNNNGTG	1 cut(s)	562
AluBI	AGCT	1 cut(s)	608
AluI	AGCT	1 cut(s)	608
Alw21I	GWGCWC	2 cut(s)	24, 958
Alw44I	GTGCAC	1 cut(s)	954
AlwI	GGATC	2 cut(s)	812, 825
AlwNI	CAGNNNCTG	1 cut(s)	1001
AoxI	GGCC	2 cut(s)	872, 1162
ApaLI	GTGCAC	1 cut(s)	954
ApeKI	GCWGC	1 cut(s)	752
ApoI	RAATTY	7 cut(s)	366, 737, 823, 845, 857, 915, 940
Asp718I	GGTACC	1 cut(s)	681
AspLEI	GCGC	1 cut(s)	466
AspS9I	GGNCC	2 cut(s)	578, 1163
AsuHPI	GGTGA	2 cut(s)	863, 941
AvaII	GGWCC	1 cut(s)	578
BaeGI	GKGCMC	1 cut(s)	958
BamHI	GGATCC	1 cut(s)	817
BanI	GGYRCC	1 cut(s)	681
BanII	GRGCYC	1 cut(s)	499
BauI	CACGAG	1 cut(s)	75
Bbv12I	GWGCWC	2 cut(s)	24, 958
BbvI	GCAGC	1 cut(s)	764
BccI	CCATC	6 cut(s)	140, 671, 773, 896, 900, 944
BceAI	ACGGC	1 cut(s)	740
BcgI	CGANNNNNNTGC	2 cut(s)	16, 50
BciT130I	CCWGG	1 cut(s)	1167
BclI	TGATCA	1 cut(s)	193
BcuI	ACTAGT	1 cut(s)	440
BfaI	CTAG	2 cut(s)	441, 554
BfuAI	ACCTGC	2 cut(s)	127, 607
BisI	GCNGC	2 cut(s)	42, 753
BlpI	GCTNAGC	1 cut(s)	23
BlsI	GCNGC	2 cut(s)	43, 754
Bme1390I	CCNGG	1 cut(s)	1167
Bme18I	GGWCC	1 cut(s)	578
BmgT120I	GGNCC	2 cut(s)	578, 1163
BmiI	GGNNCC	3 cut(s)	496, 683, 819
BmrFI	CCNGG	1 cut(s)	1167
BmsI	GCATC	2 cut(s)	70, 443
Bpu1102I	GCTNAGC	1 cut(s)	23
BsaJI	CCNNGG	3 cut(s)	712, 745, 1165
Bsc4I	CCNNNNNNNGG	2 cut(s)	827, 1076
Bse3DI	GCAATG	1 cut(s)	769
BseBI	CCWGG	1 cut(s)	1167
BseDI	CCNNGG	3 cut(s)	712, 745, 1165
BseGI	GGATG	5 cut(s)	181, 196, 424, 682, 1036
BseLI	CCNNNNNNNGG	2 cut(s)	827, 1076
BseMI	GCAATG	1 cut(s)	769
BseMII	CTCAG	2 cut(s)	37, 702
BseSI	GKGCMC	1 cut(s)	958
BseXI	GCAGC	1 cut(s)	764
BsgI	GTGCAG	1 cut(s)	771
Bsh1236I	CGCG	1 cut(s)	464
BshFI	GGCC	2 cut(s)	874, 1164
BshNI	GGYRCC	1 cut(s)	681
BsiHKAI	GWGCWC	2 cut(s)	24, 958
BslI	CCNNNNNNNGG	2 cut(s)	827, 1076
BsmI	GAATGC	1 cut(s)	27
BsnI	GGCC	2 cut(s)	874, 1164
Bsp1286I	GDGCHC	3 cut(s)	24, 499, 958
Bsp1407I	TGTACA	1 cut(s)	529
Bsp143I	GATC	4 cut(s)	193, 342, 628, 817
Bsp1720I	GCTNAGC	1 cut(s)	23
BspACI	CCGC	3 cut(s)	41, 503, 674
BspANI	GGCC	2 cut(s)	874, 1164
BspCNI	CTCAG	2 cut(s)	36, 701
BspFNI	CGCG	1 cut(s)	464
BspLI	GGNNCC	3 cut(s)	496, 683, 819
BspMI	ACCTGC	2 cut(s)	127, 607
BspPI	GGATC	2 cut(s)	812, 825
BspT107I	GGYRCC	1 cut(s)	681
BsrDI	GCAATG	1 cut(s)	769
BsrGI	TGTACA	1 cut(s)	529
BssECI	CCNNGG	3 cut(s)	712, 745, 1165
BssMI	GATC	4 cut(s)	193, 342, 628, 817
BssSI	CACGAG	1 cut(s)	75
BssT1I	CCWWGG	2 cut(s)	712, 745
Bst2BI	CACGAG	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	1167
Bst4CI	ACNGT	2 cut(s)	310, 335
BstAUI	TGTACA	1 cut(s)	529
BstDEI	CTNAG	2 cut(s)	23, 688
BstENI	CCTNNNNNAGG	1 cut(s)	1074
BstF5I	GGATG	5 cut(s)	181, 196, 424, 682, 1036
BstFNI	CGCG	1 cut(s)	464
BstHHI	GCGC	1 cut(s)	466
BstKTI	GATC	4 cut(s)	196, 345, 631, 820
BstMBI	GATC	4 cut(s)	193, 342, 628, 817
BstMWI	GCNNNNNNNGC	1 cut(s)	749
BstNI	CCWGG	1 cut(s)	1167
BstSCI	CCNGG	1 cut(s)	1165
BstSLI	GKGCMC	1 cut(s)	958
BstUI	CGCG	1 cut(s)	464
BstV1I	GCAGC	1 cut(s)	764
BstX2I	RGATCY	1 cut(s)	817
BstYI	RGATCY	1 cut(s)	817
BsuRI	GGCC	2 cut(s)	874, 1164
BtgZI	GCGATG	1 cut(s)	654
BtsCI	GGATG	5 cut(s)	181, 196, 424, 682, 1036
BtsIMutI	CAGTG	1 cut(s)	926
BveI	ACCTGC	2 cut(s)	127, 607
CaiI	CAGNNNCTG	1 cut(s)	1001
CfoI	GCGC	1 cut(s)	466
Cfr13I	GGNCC	2 cut(s)	578, 1163
CseI	GACGC	1 cut(s)	1102
Csp6I	GTAC	3 cut(s)	460, 530, 682
CviAII	CATG	3 cut(s)	455, 491, 500
CviQI	GTAC	3 cut(s)	460, 530, 682
DdeI	CTNAG	2 cut(s)	23, 688
DpnI	GATC	4 cut(s)	195, 344, 630, 819
DpnII	GATC	4 cut(s)	193, 342, 628, 817
DraI	TTTAAA	1 cut(s)	946
Eco130I	CCWWGG	2 cut(s)	712, 745
Eco24I	GRGCYC	1 cut(s)	499
Eco32I	GATATC	1 cut(s)	1007
Eco47I	GGWCC	1 cut(s)	578
Eco57I	CTGAAG	2 cut(s)	252, 609
EcoNI	CCTNNNNNAGG	1 cut(s)	1074
EcoRII	CCWGG	1 cut(s)	1165
EcoRV	GATATC	1 cut(s)	1007
EcoT14I	CCWWGG	2 cut(s)	712, 745
EcoT38I	GRGCYC	1 cut(s)	499
ErhI	CCWWGG	2 cut(s)	712, 745
FaeI	CATG	3 cut(s)	458, 494, 503
FatI	CATG	3 cut(s)	454, 490, 499
FauNDI	CATATG	1 cut(s)	171
FbaI	TGATCA	1 cut(s)	193
Fnu4HI	GCNGC	2 cut(s)	42, 753
FokI	GGATG	5 cut(s)	168, 183, 411, 689, 1043
FriOI	GRGCYC	1 cut(s)	499
Fsp4HI	GCNGC	2 cut(s)	42, 753
FspBI	CTAG	2 cut(s)	441, 554
GlaI	GCGC	1 cut(s)	465
GluI	GCNGC	2 cut(s)	42, 753
HaeIII	GGCC	2 cut(s)	874, 1164
HgaI	GACGC	1 cut(s)	1102
HhaI	GCGC	1 cut(s)	466
Hin1II	CATG	3 cut(s)	458, 494, 503
Hin6I	GCGC	1 cut(s)	464
HinP1I	GCGC	1 cut(s)	464
HincII	GTYRAC	2 cut(s)	313, 785
HindII	GTYRAC	2 cut(s)	313, 785
HinfI	GANTC	6 cut(s)	139, 220, 263, 295, 406, 998
HpaI	GTTAAC	1 cut(s)	313
HphI	GGTGA	2 cut(s)	863, 941
Hpy166II	GTNNAC	4 cut(s)	313, 785, 956, 986
Hpy188I	TCNGA	8 cut(s)	70, 225, 271, 342, 347, 589, 866, 1179
Hpy188III	TCNNGA	6 cut(s)	77, 136, 143, 626, 704, 1002
Hpy8I	GTNNAC	4 cut(s)	313, 785, 956, 986
Hpy99I	CGWCG	1 cut(s)	973
HpyAV	CCTTC	4 cut(s)	784, 808, 885, 1070
HpyCH4III	ACNGT	2 cut(s)	310, 335
HpyCH4IV	ACGT	1 cut(s)	1051
HpyCH4V	TGCA	5 cut(s)	83, 388, 752, 956, 995
HpyF10VI	GCNNNNNNNGC	1 cut(s)	749
HpyF3I	CTNAG	2 cut(s)	23, 688
HpySE526I	ACGT	1 cut(s)	1051
Hsp92II	CATG	3 cut(s)	458, 494, 503
HspAI	GCGC	1 cut(s)	464
KpnI	GGTACC	1 cut(s)	685
Ksp22I	TGATCA	1 cut(s)	193
KspAI	GTTAAC	1 cut(s)	313
Kzo9I	GATC	4 cut(s)	193, 342, 628, 817
LmnI	GCTCC	1 cut(s)	494
Lsp1109I	GCAGC	1 cut(s)	764
LweI	GCATC	2 cut(s)	70, 443
MaeI	CTAG	2 cut(s)	441, 554
MaeII	ACGT	1 cut(s)	1051
MaeIII	GTNAC	3 cut(s)	292, 443, 695
MalI	GATC	4 cut(s)	195, 344, 630, 819
MboI	GATC	4 cut(s)	193, 342, 628, 817
MboII	GAAGA	3 cut(s)	258, 360, 369
MflI	RGATCY	1 cut(s)	817
MhlI	GDGCHC	3 cut(s)	24, 499, 958
MlyI	GAGTC	3 cut(s)	148, 289, 1007
MmeI	TCCRAC	1 cut(s)	844
MnlI	CCTC	1 cut(s)	920
MseI	TTAA	6 cut(s)	101, 126, 312, 594, 842, 945
MslI	CAYNNNNRTG	1 cut(s)	562
MspR9I	CCNGG	1 cut(s)	1167
Mva1269I	GAATGC	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	1167
MvnI	CGCG	1 cut(s)	464
MwoI	GCNNNNNNNGC	1 cut(s)	749
NdeI	CATATG	1 cut(s)	171
NdeII	GATC	4 cut(s)	193, 342, 628, 817
NlaIII	CATG	3 cut(s)	458, 494, 503
NlaIV	GGNNCC	3 cut(s)	496, 683, 819
NmuCI	GTSAC	1 cut(s)	292
OliI	CACNNNNGTG	1 cut(s)	562
PaqCI	CACCTGC	1 cut(s)	607
PctI	GAATGC	1 cut(s)	27
PfeI	GAWTC	3 cut(s)	220, 263, 406
PkrI	GCNGC	2 cut(s)	43, 754
PleI	GAGTC	3 cut(s)	147, 289, 1006
PpsI	GAGTC	3 cut(s)	147, 289, 1006
PsiI	TTATAA	1 cut(s)	1110
Psp6I	CCWGG	1 cut(s)	1165
PspGI	CCWGG	1 cut(s)	1165
PspN4I	GGNNCC	3 cut(s)	496, 683, 819
PspPI	GGNCC	2 cut(s)	578, 1163
PstNI	CAGNNNCTG	1 cut(s)	1001
PsuI	RGATCY	1 cut(s)	817
RsaI	GTAC	3 cut(s)	461, 531, 683
RsaNI	GTAC	3 cut(s)	460, 530, 682
RseI	CAYNNNNRTG	1 cut(s)	562
SaqAI	TTAA	6 cut(s)	101, 126, 312, 594, 842, 945
SatI	GCNGC	2 cut(s)	42, 753
Sau3AI	GATC	4 cut(s)	193, 342, 628, 817
Sau96I	GGNCC	2 cut(s)	578, 1163
SchI	GAGTC	3 cut(s)	148, 289, 1007
ScrFI	CCNGG	1 cut(s)	1167
SduI	GDGCHC	3 cut(s)	24, 499, 958
SfaNI	GCATC	2 cut(s)	70, 443
SinI	GGWCC	1 cut(s)	578
SmiMI	CAYNNNNRTG	1 cut(s)	562
SpeI	ACTAGT	1 cut(s)	440
SsiI	CCGC	3 cut(s)	41, 503, 674
SspMI	CTAG	2 cut(s)	441, 554
StyD4I	CCNGG	1 cut(s)	1165
StyI	CCWWGG	2 cut(s)	712, 745
TaaI	ACNGT	2 cut(s)	310, 335
TaiI	ACGT	1 cut(s)	1054
TaqI	TCGA	2 cut(s)	777, 1171
TatI	WGTACW	1 cut(s)	529
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	3 cut(s)	220, 263, 406
Tru1I	TTAA	6 cut(s)	101, 126, 312, 594, 842, 945
Tru9I	TTAA	6 cut(s)	101, 126, 312, 594, 842, 945
TscAI	CASTG	1 cut(s)	926
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	1 cut(s)	752
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	8 cut(s)	158, 188, 242, 276, 479, 870, 1049, 1062
TspGWI	ACGGA	1 cut(s)	570
TspRI	CASTG	1 cut(s)	926
VneI	GTGCAC	1 cut(s)	954
VpaK11BI	GGWCC	1 cut(s)	578
XagI	CCTNNNNNAGG	1 cut(s)	1074
XapI	RAATTY	7 cut(s)	366, 737, 823, 845, 857, 915, 940
XcmI	CCANNNNNNNNNTGG	2 cut(s)	899, 973
XspI	CTAG	2 cut(s)	441, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.