Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004413

Physical Location & Seq

Genomic Coordinates Reverse (-)

62581635 .. 62584158

Gene Structure 2524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG421700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCCCAAATTCATCAATCAGCTGGACAGTGGTGGCTTAAGGTGCAAAACGAGGTATTAGGATACCGGCCAGACAACATCTTACCATATCTACAAGGCAGTGCTAATCGATGGCTACGGTGTGGAAGATTTGGGTTTGGATCTAAACAGGTTCTTTGGAGGATCGATCCCGATGGTGGCTATAGGGGAGGGGAGCGGCAGCCACGTACTAGGTGTTTCTCCTCGCTTGTCGACTATGGGGATGAAGGTTTCCAAGGCAACGACTCTACTACTTGGGCTCCTTGGGCTGGTGATCGATCTAGGGATGGTGATGCTCAACGTGGTGATTCAATTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

112

Amino Acids

12.68

Weight (kDa)

7.8

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17750 AT2G44220 AT2G44240
fragaria_vesca	FvH4_6g32790
malus_domestica	MD09G1198100.v1.1
prunus_persica	Prupe.3G054100_v2.0.a1 Prupe.3G054200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0141911 RchiOBHm_Chr2g0141931 RchiOBHm_Chr2g0141971
rosa_laevigata	RLG00000019942
rosa_multiflora	Rmu_co8265735.1_g000001 Rmu_co8330971.1_g000001 Rmu_sc0001287.1_g000036 Rmu_sc0004757.1_g000021 Rmu_sc0009946.1_g000003 Rmu_sc0009946.1_g000009
rosa_roxburghii	Rroxscaffold_2G00103690 Rroxscaffold_2G00103720
rosa_rugosa	Rorug02G0369200 Rorug02G0369300 Rorug02G0369400
rosa_samantha	Rh2AG421400 Rh2AG421600 Rh2AG421700 Rh2AG422100 Rh2BG431900 Rh2CG408700 Rh2CG408900 Rh2DG441900
rosa_wichuraiana	Rw2G034570 Rw2G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	231
AciI	CCGC	1 cut(s)	196
AclWI	GGATC	3 cut(s)	148, 161, 170
AcoI	YGGCCR	1 cut(s)	68
AcsI	RAATTY	1 cut(s)	9
AfaI	GTAC	1 cut(s)	208
AfiI	CCNNNNNNNGG	2 cut(s)	176, 287
AflII	CTTAAG	1 cut(s)	38
AgsI	TTSAA	1 cut(s)	330
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
AlwI	GGATC	3 cut(s)	148, 161, 170
AoxI	GGCC	2 cut(s)	3, 68
ApeKI	GCWGC	1 cut(s)	199
ApoI	RAATTY	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	3 cut(s)	302, 320, 335
BanII	GRGCYC	1 cut(s)	280
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	3 cut(s)	105, 167, 299
BciVI	GTATCC	1 cut(s)	56
BfaI	CTAG	2 cut(s)	210, 300
BfmI	CTRYAG	1 cut(s)	181
BfrI	CTTAAG	1 cut(s)	38
BfuI	GTATCC	1 cut(s)	56
BisI	GCNGC	2 cut(s)	197, 200
BlsI	GCNGC	2 cut(s)	198, 201
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	279
BmsI	GCATC	1 cut(s)	301
Bsa29I	ATCGAT	3 cut(s)	109, 165, 295
BsaAI	YACGTR	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	253, 281
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 287
Bse118I	RCCGGY	1 cut(s)	66
BseCI	ATCGAT	3 cut(s)	109, 165, 295
BseDI	CCNNGG	2 cut(s)	253, 281
BseGI	GGATG	2 cut(s)	247, 310
BseLI	CCNNNNNNNGG	2 cut(s)	176, 287
BseRI	GAGGAG	1 cut(s)	211
BseXI	GCAGC	1 cut(s)	211
BshFI	GGCC	2 cut(s)	5, 70
BshVI	ATCGAT	3 cut(s)	109, 165, 295
BsiSI	CCGG	1 cut(s)	67
BslI	CCNNNNNNNGG	2 cut(s)	176, 287
BsnI	GGCC	2 cut(s)	5, 70
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp143I	GATC	5 cut(s)	140, 162, 166, 292, 296
BspACI	CCGC	1 cut(s)	196
BspANI	GGCC	2 cut(s)	5, 70
BspDI	ATCGAT	3 cut(s)	109, 165, 295
BspLI	GGNNCC	1 cut(s)	279
BspPI	GGATC	3 cut(s)	148, 161, 170
BspTI	CTTAAG	1 cut(s)	38
BsrBI	CCGCTC	1 cut(s)	196
BsrFI	RCCGGY	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	2 cut(s)	253, 281
BssMI	GATC	5 cut(s)	140, 162, 166, 292, 296
BssT1I	CCWWGG	2 cut(s)	253, 281
Bst4CI	ACNGT	2 cut(s)	30, 120
BstAFI	CTTAAG	1 cut(s)	38
BstBAI	YACGTR	1 cut(s)	206
BstF5I	GGATG	2 cut(s)	247, 310
BstKTI	GATC	5 cut(s)	143, 165, 169, 295, 299
BstMBI	GATC	5 cut(s)	140, 162, 166, 292, 296
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 284
BstSFI	CTRYAG	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	211
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
Bsu15I	ATCGAT	3 cut(s)	109, 165, 295
BsuI	GTATCC	1 cut(s)	56
BsuRI	GGCC	2 cut(s)	5, 70
BsuTUI	ATCGAT	3 cut(s)	109, 165, 295
BtsCI	GGATG	2 cut(s)	247, 310
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	2 cut(s)	35, 106
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	3 cut(s)	109, 165, 295
Csp6I	GTAC	1 cut(s)	207
CviJI	RGCY	9 cut(s)	5, 23, 37, 70, 115, 180, 202, 278, 287
CviKI_1	RGCY	9 cut(s)	5, 23, 37, 70, 115, 180, 202, 278, 287
CviQI	GTAC	1 cut(s)	207
DpnI	GATC	5 cut(s)	142, 164, 168, 294, 298
DpnII	GATC	5 cut(s)	140, 162, 166, 292, 296
EaeI	YGGCCR	1 cut(s)	68
Eco130I	CCWWGG	2 cut(s)	253, 281
Eco24I	GRGCYC	1 cut(s)	280
EcoT14I	CCWWGG	2 cut(s)	253, 281
EcoT38I	GRGCYC	1 cut(s)	280
ErhI	CCWWGG	2 cut(s)	253, 281
FaiI	YATR	4 cut(s)	88, 183, 237, 337
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	2 cut(s)	197, 200
FokI	GGATG	2 cut(s)	254, 317
FriOI	GRGCYC	1 cut(s)	280
Fsp4HI	GCNGC	2 cut(s)	197, 200
FspBI	CTAG	2 cut(s)	210, 300
GluI	GCNGC	2 cut(s)	197, 200
HaeIII	GGCC	2 cut(s)	5, 70
HapII	CCGG	1 cut(s)	67
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HinfI	GANTC	2 cut(s)	263, 326
HpaII	CCGG	1 cut(s)	67
HphI	GGTGA	3 cut(s)	302, 320, 335
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	1 cut(s)	239
HpyCH4III	ACNGT	2 cut(s)	30, 120
HpyCH4IV	ACGT	2 cut(s)	205, 319
HpyCH4V	TGCA	1 cut(s)	46
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 284
HpySE526I	ACGT	2 cut(s)	205, 319
Kzo9I	GATC	5 cut(s)	140, 162, 166, 292, 296
LmnI	GCTCC	2 cut(s)	193, 283
LpnPI	CCDG	5 cut(s)	9, 80, 84, 134, 273
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	2 cut(s)	210, 300
MaeII	ACGT	2 cut(s)	205, 319
MalI	GATC	5 cut(s)	142, 164, 168, 294, 298
MbiI	CCGCTC	1 cut(s)	196
MboI	GATC	5 cut(s)	140, 162, 166, 292, 296
MboII	GAAGA	1 cut(s)	138
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	1 cut(s)	280
MluCI	AATT	2 cut(s)	9, 330
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	4 cut(s)	46, 153, 182, 232
MseI	TTAA	1 cut(s)	39
MspA1I	CMGCKG	1 cut(s)	23
MspCI	CTTAAG	1 cut(s)	38
MspI	CCGG	1 cut(s)	67
MwoI	GCNNNNNNNGC	2 cut(s)	43, 284
NdeII	GATC	5 cut(s)	140, 162, 166, 292, 296
NlaIV	GGNNCC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	326
PkrI	GCNGC	2 cut(s)	198, 201
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
Ppu21I	YACGTR	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
SalI	GTCGAC	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	2 cut(s)	197, 200
Sau3AI	GATC	5 cut(s)	140, 162, 166, 292, 296
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	257
SduI	GDGCHC	1 cut(s)	280
SetI	ASST	8 cut(s)	25, 45, 57, 153, 208, 215, 250, 322
SfaNI	GCATC	1 cut(s)	301
SfcI	CTRYAG	1 cut(s)	181
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	2 cut(s)	9, 330
SsiI	CCGC	1 cut(s)	196
SspMI	CTAG	2 cut(s)	210, 300
StyI	CCWWGG	2 cut(s)	253, 281
TaaI	ACNGT	2 cut(s)	30, 120
TaiI	ACGT	2 cut(s)	208, 322
TaqI	TCGA	4 cut(s)	109, 165, 231, 295
TasI	AATT	2 cut(s)	9, 330
TauI	GCSGC	1 cut(s)	199
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	2 cut(s)	35, 106
TseI	GCWGC	1 cut(s)	199
TspDTI	ATGAA	2 cut(s)	258, 324
TspRI	CASTG	2 cut(s)	35, 106
Vha464I	CTTAAG	1 cut(s)	38
XapI	RAATTY	1 cut(s)	9
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	2 cut(s)	210, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.