Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004413

Physical Location & Seq

Genomic Coordinates Reverse (-)

64210600 .. 64217211

Gene Structure 6612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG441900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGTACACACCACGTATTGGGTGTTTCTCCTCACTTGTCGACTATGGGGATGGAGGTTTCCAAGGCAACGACTCTACTACTTGGGCTCCTTATCTAAGGATGGTGATGCTCAACATGGTGGCTATTTAGGCTATGCTGGTGATGGCTTGAAGGAAGTTGGTAGGGGCGACCTATCTTCTGGCGATGACAACATACAACTTGGTAGCGGATACGTTGTGGAGCAGTTAAGAATTAAAACCGTGGAGAACAATAATCCAATCATCAAAAGCATAAAGGGCGATGAAGGTGATGTGATAGATTGCATTGACATCTATAAGCAGCCTGCTCTTAGTCATCCACTTCTCAAAAATCATACTATACAGCTGAATCCGCCAAGTCCGTATCCAAGTGGACTTAATGAAACAGAAAGTTCTCATCAAGATGACGAGCAAGTACTGAAATCTTGGTTATTGAATGAAGAGTGCCCAGAAGGAACAATCCCCATTCTTCGAACTCAGGCTTTTAATAGTTCTTTTCCTAAATCTAGCCCACCTTTCAATGGAAGCAACGTTGAGTTCACGCCTGCATCTGGTCATGAGTACGCCGTAGCTAGTCTTTCAGGTGGCCAATATTACGGAGCACACGCATCTGTGAACGTATGGAGCCCTTTATCAGTTTTTGAGGAGAATAGTATATCCCAGATATGGGTAGCGGGAGGTCATGAACAAGCACGAAGTACTGTTGAGGCTGGGTGGAAAATTAATTCGGCTGACCAGCAAACAAGGTTCTTCATATTCTGGACAGGCCATGGTTACCAAGATGGTTGCTACAATCTTCAATGTCCTGGTTTCGTCCAAGTAAACAGAAAGTTTGCCCTAGGTTTACCCATTAAACCTGTTTCAATCTACAACGGCAAACAATTTGAAATATTCATAAGTATATACAAGCACCAATCGACTGGACAGTGGTGGGTAATGTTGCAAGATCAAGCATTAGGATACTGGCCAGACAAAATCTTACCAAGTCTGAGAGGCAGTGCTGACGCGGTTAGCTGGGGTGGTGAAATTTACAATTCAGAAATTGGAGGTCGTCACACATCAACTCAGATGGGGAGTGGTCATTTCCCGAGTGAAGGCTATGGCAAAGCAAGCTATTTTCGAAATATTCAGTACTTGGCCAACTCTGGAAAGTTTGTAGATGCACAAGGGCTTATACCCTATGTCACAAAGCCTCCATGCTACAACCTTATTATGAAAAATAAAGCCCCAGGATTTGGAAACCATTTCTATTATGGGGGATTTGGATATTCAGAAAGATGCCCTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

435

Amino Acids

48.45

Weight (kDa)

6.35

Isoelectric Point (pI)

36.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Neprosin_AP	PF14365	90 - 167	8.1e-23	Neprosin activation peptide
Neprosin	PF03080	222 - 426	2.3e-69	Neprosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17750 AT2G44220 AT2G44240
fragaria_vesca	FvH4_6g32790
malus_domestica	MD09G1198100.v1.1
prunus_persica	Prupe.3G054100_v2.0.a1 Prupe.3G054200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0141911 RchiOBHm_Chr2g0141931 RchiOBHm_Chr2g0141971
rosa_laevigata	RLG00000019942
rosa_multiflora	Rmu_co8265735.1_g000001 Rmu_co8330971.1_g000001 Rmu_sc0001287.1_g000036 Rmu_sc0004757.1_g000021 Rmu_sc0009946.1_g000003 Rmu_sc0009946.1_g000009
rosa_roxburghii	Rroxscaffold_2G00103690 Rroxscaffold_2G00103720
rosa_rugosa	Rorug02G0369200 Rorug02G0369300 Rorug02G0369400
rosa_samantha	Rh2AG421400 Rh2AG421600 Rh2AG421700 Rh2AG422100 Rh2BG431900 Rh2CG408700 Rh2CG408900 Rh2DG441900
rosa_wichuraiana	Rw2G034570 Rw2G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	18, 1253
AccI	GTMKAC	1 cut(s)	40
AccII	CGCG	1 cut(s)	1025
AciI	CCGC	4 cut(s)	207, 371, 692, 1025
AclI	AACGTT	1 cut(s)	549
AcoI	YGGCCR	3 cut(s)	604, 983, 1155
AcsI	RAATTY	1 cut(s)	1044
AfaI	GTAC	5 cut(s)	6, 435, 581, 718, 1151
AfiI	CCNNNNNNNGG	7 cut(s)	18, 539, 569, 684, 685, 1112, 1253
AgsI	TTSAA	6 cut(s)	151, 454, 538, 818, 882, 905
AjnI	CCWGG	2 cut(s)	823, 1246
AluBI	AGCT	4 cut(s)	364, 590, 1032, 1131
AluI	AGCT	4 cut(s)	364, 590, 1032, 1131
Alw21I	GWGCWC	1 cut(s)	622
Ama87I	CYCGRG	1 cut(s)	1105
AoxI	GGCC	4 cut(s)	604, 784, 983, 1155
ApeKI	GCWGC	1 cut(s)	319
ApoI	RAATTY	1 cut(s)	1044
AseI	ATTAAT	1 cut(s)	741
AspA2I	CCTAGG	1 cut(s)	856
AsuHPI	GGTGA	4 cut(s)	116, 152, 299, 1052
AsuII	TTCGAA	2 cut(s)	490, 1138
AvaI	CYCGRG	1 cut(s)	1105
AvrII	CCTAGG	1 cut(s)	856
BaeGI	GKGCMC	1 cut(s)	467
BalI	TGGCCA	3 cut(s)	606, 985, 1157
BanII	GRGCYC	2 cut(s)	89, 647
Bbv12I	GWGCWC	1 cut(s)	622
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	5 cut(s)	45, 95, 137, 794, 1081
BceAI	ACGGC	2 cut(s)	569, 907
BciT130I	CCWGG	2 cut(s)	825, 1248
BciVI	GTATCC	3 cut(s)	203, 393, 971
BfaI	CTAG	3 cut(s)	525, 591, 857
BfuI	GTATCC	3 cut(s)	203, 393, 971
BisI	GCNGC	1 cut(s)	320
BlnI	CCTAGG	1 cut(s)	856
BlsI	GCNGC	1 cut(s)	321
BmcAI	AGTACT	3 cut(s)	435, 718, 1151
Bme1390I	CCNGG	2 cut(s)	825, 1248
BmeT110I	CYCGRG	1 cut(s)	1105
BmiI	GGNNCC	2 cut(s)	88, 644
BmrFI	CCNGG	2 cut(s)	825, 1248
BmsI	GCATC	5 cut(s)	97, 575, 635, 1168, 1286
Bpu14I	TTCGAA	2 cut(s)	490, 1138
BsaAI	YACGTR	1 cut(s)	15
BsaJI	CCNNGG	5 cut(s)	62, 240, 787, 856, 1246
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 101, 1195, 1225
Bsc4I	CCNNNNNNNGG	7 cut(s)	18, 539, 569, 684, 685, 1112, 1253
Bse1I	ACTGG	2 cut(s)	943, 986
BseBI	CCWGG	2 cut(s)	825, 1248
BseDI	CCNNGG	5 cut(s)	62, 240, 787, 856, 1246
BseGI	GGATG	3 cut(s)	56, 106, 334
BseLI	CCNNNNNNNGG	7 cut(s)	18, 539, 569, 684, 685, 1112, 1253
BseMII	CTCAG	3 cut(s)	509, 998, 1097
BseNI	ACTGG	2 cut(s)	943, 986
BseRI	GAGGAG	2 cut(s)	20, 677
BseSI	GKGCMC	1 cut(s)	467
BseXI	GCAGC	1 cut(s)	331
BseYI	CCCAGC	2 cut(s)	728, 1032
Bsh1236I	CGCG	1 cut(s)	1025
BshFI	GGCC	4 cut(s)	606, 786, 985, 1157
BsiHKAI	GWGCWC	1 cut(s)	622
BsiHKCI	CYCGRG	1 cut(s)	1105
BslI	CCNNNNNNNGG	7 cut(s)	18, 539, 569, 684, 685, 1112, 1253
BsnI	GGCC	4 cut(s)	606, 786, 985, 1157
BsoBI	CYCGRG	1 cut(s)	1105
Bsp119I	TTCGAA	2 cut(s)	490, 1138
Bsp1286I	GDGCHC	4 cut(s)	89, 467, 622, 647
Bsp143I	GATC	1 cut(s)	964
Bsp19I	CCATGG	1 cut(s)	787
BspACI	CCGC	4 cut(s)	207, 371, 692, 1025
BspANI	GGCC	4 cut(s)	606, 786, 985, 1157
BspCNI	CTCAG	3 cut(s)	508, 999, 1096
BspFNI	CGCG	1 cut(s)	1025
BspHI	TCATGA	2 cut(s)	574, 700
BspLI	GGNNCC	2 cut(s)	88, 644
BspT104I	TTCGAA	2 cut(s)	490, 1138
BsrI	ACTGG	2 cut(s)	943, 986
BssECI	CCNNGG	5 cut(s)	62, 240, 787, 856, 1246
BssMI	GATC	1 cut(s)	964
BssT1I	CCWWGG	3 cut(s)	62, 787, 856
Bst2UI	CCWGG	2 cut(s)	825, 1248
Bst4CI	ACNGT	3 cut(s)	241, 721, 945
Bst6I	CTCTTC	1 cut(s)	453
BstBAI	YACGTR	1 cut(s)	15
BstBI	TTCGAA	2 cut(s)	490, 1138
BstC8I	GCNNGC	3 cut(s)	324, 564, 1129
BstDEI	CTNAG	5 cut(s)	96, 329, 495, 1007, 1083
BstDSI	CCRYGG	2 cut(s)	240, 787
BstEII	GGTNACC	1 cut(s)	791
BstF5I	GGATG	3 cut(s)	56, 106, 334
BstFNI	CGCG	1 cut(s)	1025
BstKTI	GATC	1 cut(s)	967
BstMBI	GATC	1 cut(s)	964
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 276, 370, 1128
BstNI	CCWGG	2 cut(s)	825, 1248
BstPI	GGTNACC	1 cut(s)	791
BstSCI	CCNGG	2 cut(s)	823, 1246
BstSLI	GKGCMC	1 cut(s)	467
BstUI	CGCG	1 cut(s)	1025
BstV1I	GCAGC	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	938
BsuI	GTATCC	3 cut(s)	203, 393, 971
BsuRI	GGCC	4 cut(s)	606, 786, 985, 1157
BtgI	CCRYGG	2 cut(s)	240, 787
BtgZI	GCGATG	2 cut(s)	198, 294
BtsCI	GGATG	3 cut(s)	56, 106, 334
BtsI	GCAGTG	1 cut(s)	1021
BtsIMutI	CAGTG	2 cut(s)	950, 1021
Cac8I	GCNNGC	3 cut(s)	324, 564, 1129
CciI	TCATGA	2 cut(s)	574, 700
CseI	GACGC	1 cut(s)	1031
Csp6I	GTAC	5 cut(s)	5, 434, 580, 717, 1150
CviAII	CATG	5 cut(s)	116, 575, 701, 788, 1215
CviQI	GTAC	5 cut(s)	5, 434, 580, 717, 1150
DdeI	CTNAG	5 cut(s)	96, 329, 495, 1007, 1083
DpnI	GATC	1 cut(s)	966
DpnII	GATC	1 cut(s)	964
EaeI	YGGCCR	3 cut(s)	604, 983, 1155
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
EciI	GGCGGA	1 cut(s)	360
Eco130I	CCWWGG	3 cut(s)	62, 787, 856
Eco24I	GRGCYC	2 cut(s)	89, 647
Eco88I	CYCGRG	1 cut(s)	1105
Eco91I	GGTNACC	1 cut(s)	791
EcoO65I	GGTNACC	1 cut(s)	791
EcoRII	CCWGG	2 cut(s)	823, 1246
EcoT14I	CCWWGG	3 cut(s)	62, 787, 856
EcoT38I	GRGCYC	2 cut(s)	89, 647
ErhI	CCWWGG	3 cut(s)	62, 787, 856
FaeI	CATG	5 cut(s)	119, 578, 704, 791, 1218
FatI	CATG	5 cut(s)	115, 574, 700, 787, 1214
FauI	CCCGC	1 cut(s)	685
FblI	GTMKAC	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	320
FokI	GGATG	3 cut(s)	63, 113, 321
FriOI	GRGCYC	2 cut(s)	89, 647
Fsp4HI	GCNGC	1 cut(s)	320
FspBI	CTAG	3 cut(s)	525, 591, 857
GluI	GCNGC	1 cut(s)	320
GsaI	CCCAGC	2 cut(s)	732, 1036
HaeIII	GGCC	4 cut(s)	606, 786, 985, 1157
HgaI	GACGC	1 cut(s)	1031
Hin1II	CATG	5 cut(s)	119, 578, 704, 791, 1218
HincII	GTYRAC	1 cut(s)	41
HindII	GTYRAC	1 cut(s)	41
HinfI	GANTC	2 cut(s)	72, 367
HphI	GGTGA	4 cut(s)	116, 152, 299, 1052
Hpy166II	GTNNAC	7 cut(s)	7, 41, 392, 558, 634, 841, 863
Hpy188I	TCNGA	4 cut(s)	1008, 1057, 1086, 1291
Hpy188III	TCNNGA	6 cut(s)	419, 575, 701, 778, 1105, 1164
Hpy8I	GTNNAC	7 cut(s)	7, 41, 392, 558, 634, 841, 863
HpyAV	CCTTC	4 cut(s)	145, 278, 464, 1106
HpyCH4III	ACNGT	3 cut(s)	241, 721, 945
HpyCH4IV	ACGT	4 cut(s)	14, 213, 549, 636
HpyCH4V	TGCA	4 cut(s)	303, 566, 961, 1181
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 276, 370, 1128
HpyF3I	CTNAG	5 cut(s)	96, 329, 495, 1007, 1083
HpySE526I	ACGT	4 cut(s)	14, 213, 549, 636
Hsp92II	CATG	5 cut(s)	119, 578, 704, 791, 1218
Kzo9I	GATC	1 cut(s)	964
LmnI	GCTCC	4 cut(s)	92, 220, 617, 642
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	5 cut(s)	97, 575, 635, 1168, 1286
MaeI	CTAG	3 cut(s)	525, 591, 857
MaeII	ACGT	4 cut(s)	14, 213, 549, 636
MaeIII	GTNAC	3 cut(s)	791, 1070, 1201
MalI	GATC	1 cut(s)	966
MboI	GATC	1 cut(s)	964
MboII	GAAGA	5 cut(s)	168, 470, 479, 760, 806
MhlI	GDGCHC	4 cut(s)	89, 467, 622, 647
MlsI	TGGCCA	3 cut(s)	606, 985, 1157
MluCI	AATT	7 cut(s)	231, 738, 742, 899, 1044, 1051, 1059
MluNI	TGGCCA	3 cut(s)	606, 985, 1157
MlyI	GAGTC	1 cut(s)	66
MnlI	CCTC	8 cut(s)	41, 48, 655, 689, 718, 1004, 1058, 1221
Mox20I	TGGCCA	3 cut(s)	606, 985, 1157
MscI	TGGCCA	3 cut(s)	606, 985, 1157
MseI	TTAA	6 cut(s)	227, 234, 396, 504, 741, 870
MslI	CAYNNNNRTG	1 cut(s)	420
Msp20I	TGGCCA	3 cut(s)	606, 985, 1157
MspA1I	CMGCKG	1 cut(s)	364
MspR9I	CCNGG	2 cut(s)	825, 1248
MvaI	CCWGG	2 cut(s)	825, 1248
MvnI	CGCG	1 cut(s)	1025
MwoI	GCNNNNNNNGC	4 cut(s)	129, 276, 370, 1128
NcoI	CCATGG	1 cut(s)	787
NdeII	GATC	1 cut(s)	964
NlaIII	CATG	5 cut(s)	119, 578, 704, 791, 1218
NlaIV	GGNNCC	2 cut(s)	88, 644
NmuCI	GTSAC	2 cut(s)	1070, 1201
NspV	TTCGAA	2 cut(s)	490, 1138
PagI	TCATGA	2 cut(s)	574, 700
PfeI	GAWTC	1 cut(s)	367
PflMI	CCANNNNNTGG	2 cut(s)	18, 1253
PkrI	GCNGC	1 cut(s)	321
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
Ppu21I	YACGTR	1 cut(s)	15
PshBI	ATTAAT	1 cut(s)	741
Psp1406I	AACGTT	1 cut(s)	549
Psp6I	CCWGG	2 cut(s)	823, 1246
PspEI	GGTNACC	1 cut(s)	791
PspFI	CCCAGC	2 cut(s)	728, 1032
PspGI	CCWGG	2 cut(s)	823, 1246
PspN4I	GGNNCC	2 cut(s)	88, 644
PvuII	CAGCTG	1 cut(s)	364
RsaI	GTAC	5 cut(s)	6, 435, 581, 718, 1151
RsaNI	GTAC	5 cut(s)	5, 434, 580, 717, 1150
RseI	CAYNNNNRTG	1 cut(s)	420
SalI	GTCGAC	1 cut(s)	39
SaqAI	TTAA	6 cut(s)	227, 234, 396, 504, 741, 870
SatI	GCNGC	1 cut(s)	320
Sau3AI	GATC	1 cut(s)	964
ScaI	AGTACT	3 cut(s)	435, 718, 1151
SchI	GAGTC	1 cut(s)	66
ScrFI	CCNGG	2 cut(s)	825, 1248
SduI	GDGCHC	4 cut(s)	89, 467, 622, 647
SfaNI	GCATC	5 cut(s)	97, 575, 635, 1168, 1286
SfuI	TTCGAA	2 cut(s)	490, 1138
SmiMI	CAYNNNNRTG	1 cut(s)	420
Sse9I	AATT	7 cut(s)	231, 738, 742, 899, 1044, 1051, 1059
SsiI	CCGC	4 cut(s)	207, 371, 692, 1025
SspI	AATATT	3 cut(s)	611, 909, 1144
SspMI	CTAG	3 cut(s)	525, 591, 857
StyD4I	CCNGG	2 cut(s)	823, 1246
StyI	CCWWGG	3 cut(s)	62, 787, 856
TaaI	ACNGT	3 cut(s)	241, 721, 945
TaiI	ACGT	4 cut(s)	17, 216, 552, 639
TaqI	TCGA	4 cut(s)	40, 490, 935, 1138
TasI	AATT	7 cut(s)	231, 738, 742, 899, 1044, 1051, 1059
TatI	WGTACW	3 cut(s)	433, 716, 1149
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	6 cut(s)	227, 234, 396, 504, 741, 870
Tru9I	TTAA	6 cut(s)	227, 234, 396, 504, 741, 870
TscAI	CASTG	2 cut(s)	950, 1021
TseFI	GTSAC	2 cut(s)	1070, 1201
TseI	GCWGC	1 cut(s)	319
Tsp45I	GTSAC	2 cut(s)	1070, 1201
TspDTI	ATGAA	7 cut(s)	297, 414, 471, 717, 760, 901, 1247
TspGWI	ACGGA	2 cut(s)	369, 630
TspRI	CASTG	2 cut(s)	950, 1021
Van91I	CCANNNNNTGG	2 cut(s)	18, 1253
VspI	ATTAAT	1 cut(s)	741
XapI	RAATTY	1 cut(s)	1044
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1268
XmaJI	CCTAGG	1 cut(s)	856
XmiI	GTMKAC	1 cut(s)	40
XspI	CTAG	3 cut(s)	525, 591, 857
ZrmI	AGTACT	3 cut(s)	435, 718, 1151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.