Rorug02G0369400

Neprosin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004413
Physical Location & Seq
Forward (+)
47109229 .. 47111467
2239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0369400.1

Sequence Viewer

Length: 744 bp
ATGCAGCGAGAACCATACAGAGGCAAATTCGTACCCATATGGCACGCAAAGAGTTTGTTGCAATACGTAAAGCTGCTATTCAATTACAATCCTATGTGCGAGGTGGCATTGGGTGAAAAAAGTGCTTATCTAACTTCCCATCATTCATACATACATAAAGGAGAGGCATCAAGGCATTGGGGAGTGACAACGAAAGTAAAGGCTGTTGTTGATGCAACTTCTGCTGGCATCTTCATTGTCATCACAAAGTGTGTTCTTCAAGACTTGGTTGGTTTCAACATTTTACTAAATTTTGTTAGAAAACTAGTTCTGTTGATACAACAGCAAGCATATAAGCCCCTGTTGTCTGGCACAGCCTTCAGACACAGCAAGCATATAAGCCCCTGTTGTCTGGCACAGCCTTCAGACTACAGCAAGCATATAAGCCCCTGTTGTCTGGCACAACCTTCAGACAACAGCAAACATATAAGCCTCTGTTGTCTGGCACAGCATTCAGACAACAACGGCATTGAGATAGACAACAGCAAATTCTTATACCTGGTTCCTTCTTTCACAAGTCCTAGCATTATGGCCTTTCTTGTTACATCTTCCACAAGTCACTTGAGAATAATAAGTCCTTGGTGGTGGTTCTTCACCTACATCAAAGTCAAGTATAATGGTTGCCTTCTGTGCAATGGAGGAGCAATCTTCCTGTCTATAACTTGCCATTCTGAAACTCCAGCTATGGGATGCAACATCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Neprosin Neprosin_AP

Protein Analysis

247

Amino Acids

27.69

Weight (kDa)

9.05

Isoelectric Point (pI)

41.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 26, 289, 527
AcuI CTGAAG 3 cut(s) 343, 387, 432
AdeI CACNNNGTG 1 cut(s) 249
AfaI GTAC 1 cut(s) 33
AfiI CCNNNNNNNGG 2 cut(s) 20, 725
AgsI TTSAA 3 cut(s) 82, 260, 277
AhlI ACTAGT 1 cut(s) 304
AjnI CCWGG 1 cut(s) 537
AluBI AGCT 2 cut(s) 73, 722
AluI AGCT 2 cut(s) 73, 722
AoxI GGCC 1 cut(s) 570
ApeKI GCWGC 2 cut(s) 4, 73
ApoI RAATTY 3 cut(s) 26, 289, 527
AsuHPI GGTGA 3 cut(s) 125, 625, 730
BbvI GCAGC 2 cut(s) 16, 60
BccI CCATC 1 cut(s) 147
BceAI ACGGC 1 cut(s) 520
BciT130I CCWGG 1 cut(s) 539
BcuI ACTAGT 1 cut(s) 304
BfaI CTAG 2 cut(s) 305, 561
BfmI CTRYAG 1 cut(s) 409
BisI GCNGC 2 cut(s) 5, 74
BlsI GCNGC 2 cut(s) 6, 75
Bme1390I CCNGG 1 cut(s) 539
BmiI GGNNCC 1 cut(s) 543
BmrFI CCNGG 1 cut(s) 539
BmsI GCATC 4 cut(s) 176, 202, 237, 719
BpmI CTGGAG 1 cut(s) 702
BpuEI CTTGAG 1 cut(s) 622
BsaAI YACGTR 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 617
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 725
Bse3DI GCAATG 1 cut(s) 679
BseBI CCWGG 1 cut(s) 539
BseDI CCNNGG 1 cut(s) 617
BseGI GGATG 1 cut(s) 734
BseLI CCNNNNNNNGG 2 cut(s) 20, 725
BseMI GCAATG 1 cut(s) 679
BseRI GAGGAG 1 cut(s) 693
BseXI GCAGC 2 cut(s) 16, 60
BshFI GGCC 1 cut(s) 572
BslI CCNNNNNNNGG 2 cut(s) 20, 725
BsmI GAATGC 1 cut(s) 490
BsnI GGCC 1 cut(s) 572
BspANI GGCC 1 cut(s) 572
BspLI GGNNCC 1 cut(s) 543
BsrDI GCAATG 1 cut(s) 679
BssECI CCNNGG 1 cut(s) 617
BssT1I CCWWGG 1 cut(s) 617
Bst2UI CCWGG 1 cut(s) 539
BstAPI GCANNNNNTGC 1 cut(s) 221
BstBAI YACGTR 1 cut(s) 67
BstC8I GCNNGC 5 cut(s) 45, 226, 327, 371, 416
BstF5I GGATG 1 cut(s) 734
BstMWI GCNNNNNNNGC 2 cut(s) 221, 669
BstNI CCWGG 1 cut(s) 539
BstSCI CCNGG 1 cut(s) 537
BstSFI CTRYAG 1 cut(s) 409
BstSNI TACGTA 1 cut(s) 67
BstV1I GCAGC 2 cut(s) 16, 60
BsuRI GGCC 1 cut(s) 572
BtsCI GGATG 1 cut(s) 734
Cac8I GCNNGC 5 cut(s) 45, 226, 327, 371, 416
CsiI ACCWGGT 1 cut(s) 537
Csp6I GTAC 1 cut(s) 32
CviQI GTAC 1 cut(s) 32
DraIII CACNNNGTG 1 cut(s) 249
Eco105I TACGTA 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 617
Eco57I CTGAAG 3 cut(s) 343, 387, 432
EcoRII CCWGG 1 cut(s) 537
EcoT14I CCWWGG 1 cut(s) 617
ErhI CCWWGG 1 cut(s) 617
FauNDI CATATG 1 cut(s) 38
Fnu4HI GCNGC 2 cut(s) 5, 74
Fsp4HI GCNGC 2 cut(s) 5, 74
FspBI CTAG 2 cut(s) 305, 561
GluI GCNGC 2 cut(s) 5, 74
GsuI CTGGAG 1 cut(s) 702
HaeIII GGCC 1 cut(s) 572
HphI GGTGA 3 cut(s) 125, 625, 730
Hpy188I TCNGA 5 cut(s) 362, 406, 451, 496, 712
Hpy188III TCNNGA 1 cut(s) 260
HpyAV CCTTC 5 cut(s) 367, 411, 456, 555, 674
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 5 cut(s) 4, 61, 215, 672, 732
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 669
HpySE526I ACGT 1 cut(s) 66
LmnI GCTCC 1 cut(s) 680
Lsp1109I GCAGC 2 cut(s) 16, 60
LweI GCATC 4 cut(s) 176, 202, 237, 719
MabI ACCWGGT 1 cut(s) 537
MaeI CTAG 2 cut(s) 305, 561
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 3 cut(s) 184, 580, 596
MboII GAAGA 5 cut(s) 223, 248, 579, 622, 679
MluCI AATT 4 cut(s) 26, 82, 289, 527
MnlI CCTC 5 cut(s) 14, 94, 157, 482, 671
MspR9I CCNGG 1 cut(s) 539
Mva1269I GAATGC 1 cut(s) 490
MvaI CCWGG 1 cut(s) 539
MwoI GCNNNNNNNGC 2 cut(s) 221, 669
NdeI CATATG 1 cut(s) 38
NlaIV GGNNCC 1 cut(s) 543
NmuCI GTSAC 2 cut(s) 184, 596
PctI GAATGC 1 cut(s) 490
PkrI GCNGC 2 cut(s) 6, 75
Ppu21I YACGTR 1 cut(s) 67
Psp6I CCWGG 1 cut(s) 537
PspGI CCWGG 1 cut(s) 537
PspN4I GGNNCC 1 cut(s) 543
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SatI GCNGC 2 cut(s) 5, 74
ScrFI CCNGG 1 cut(s) 539
SetI ASST 8 cut(s) 69, 75, 105, 448, 540, 638, 724, 743
SexAI ACCWGGT 1 cut(s) 537
SfaNI GCATC 4 cut(s) 176, 202, 237, 719
SfcI CTRYAG 1 cut(s) 409
SmlI CTYRAG 1 cut(s) 601
SmoI CTYRAG 1 cut(s) 601
SnaBI TACGTA 1 cut(s) 67
SpeI ACTAGT 1 cut(s) 304
Sse9I AATT 4 cut(s) 26, 82, 289, 527
SspMI CTAG 2 cut(s) 305, 561
StyD4I CCNGG 1 cut(s) 537
StyI CCWWGG 1 cut(s) 617
TaiI ACGT 1 cut(s) 69
TasI AATT 4 cut(s) 26, 82, 289, 527
TseFI GTSAC 2 cut(s) 184, 596
TseI GCWGC 2 cut(s) 4, 73
Tsp45I GTSAC 2 cut(s) 184, 596
TspDTI ATGAA 2 cut(s) 135, 223
XapI RAATTY 3 cut(s) 26, 289, 527
XspI CTAG 2 cut(s) 305, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.