Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004413

Physical Location & Seq

Genomic Coordinates Forward (+)

3802388 .. 3804936

Gene Structure 2549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G054100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGCAATTGAGATTCATTACACCAAACTCGGAGGCTGCTTTTTTATTGCAGCATTAACAAGTTTCATGTTGAGCAACGCATTTGCTGATTGCAGAAAAGTTGAAACACTGAAAAAAACCGAAGCGTCTGTGAAGCCCAACAAAGCAGTCATCAAAACTATAAAGGGAGAGGGCGATGATTTGATAGATTGTGTTGATATCTATAAGCAGCCAGCTCTTAATCACCCTCTTCTCAAAAATCACACCATACAGCTGAAACCAAGTGGAACTGAAACCGTAAGTGGTGTTCAAGATGAGATCTTTCAATCTTGGAGTCGGAATGGAGAGTGCCCGGACGGAACAATCCCCATTGTGCGACGAACACAGGGATTTGAGCACCCTCCATCTAAAACAATGCCACAGTTTGAGCCCAACAAATTTGAGCTCATCCCTCCTCCTCATCATGAGTATGCCCAAGTTAGTTTGTACGGTGGTCAATACTATGGAGCGCAAGCAGGATTTAATGTATGGAACCCAGCAGCATATAATGAAGACAACAGTATAGCCCAGATATGGGTTGTGCGAGGTAACGGAAAAGCACTGAACAGTGTAGAAGCTGGGTGGATACGTCATAACTCTAAATTACATGTTACTTGGCAGGGTGATGGTTACCAATCCACTGGTTGCTACAATCTTGAATGTCCTGGTTTCGTCCAAACAAGCAAAAAATTTGCCCTTGGCGTACCAATATCACCTATTTCTGGGTACAATGGGAAGCAGTATGACACATTCGTAAGCATATACAAGAACACAAATAGTGGACATTGGTGGCTTCAAGTGCAAAATGAGGCAATAGGATACTGGCCTGACACCATTCTCCCAAACCTAAGAGGCAGTGCTGAATTGGTTAGTTGGGGAGGGGAGATTTACGATTCACAAGCTGAGGGTCATCACACATCTACTCAAATGGGGAGTGGTCATTTTCCTGATGAAGGATTTGGGAAAGCCAGCTATGTTCGCCATCTCCAATACATGGACGATTCTTCGCCTCTCACTTTCAAAGATCCTGCTGGTCTTCTAACTTCTGTGACAAAGCCTTCATGCTACAATTTAATTGTTAAAGACAAAACCCCAGACATGGGAACCCATTTCTATTATGGAGGTCCTGGGTTTTCAGCATCATGTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

390

Amino Acids

43.05

Weight (kDa)

6.27

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17750 AT2G44220 AT2G44240
fragaria_vesca	FvH4_6g32790
malus_domestica	MD09G1198100.v1.1
prunus_persica	Prupe.3G054100_v2.0.a1 Prupe.3G054200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0141911 RchiOBHm_Chr2g0141931 RchiOBHm_Chr2g0141971
rosa_laevigata	RLG00000019942
rosa_multiflora	Rmu_co8265735.1_g000001 Rmu_co8330971.1_g000001 Rmu_sc0001287.1_g000036 Rmu_sc0004757.1_g000021 Rmu_sc0009946.1_g000003 Rmu_sc0009946.1_g000009
rosa_roxburghii	Rroxscaffold_2G00103690 Rroxscaffold_2G00103720
rosa_rugosa	Rorug02G0369200 Rorug02G0369300 Rorug02G0369400
rosa_samantha	Rh2AG421400 Rh2AG421600 Rh2AG421700 Rh2AG422100 Rh2BG431900 Rh2CG408700 Rh2CG408900 Rh2DG441900
rosa_wichuraiana	Rw2G034570 Rw2G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1012
AclWI	GGATC	1 cut(s)	1037
AcsI	RAATTY	2 cut(s)	416, 707
AfaI	GTAC	3 cut(s)	467, 723, 746
AfiI	CCNNNNNNNGG	7 cut(s)	552, 553, 740, 971, 1012, 1117, 1118
AflIII	ACRYGT	1 cut(s)	625
AgsI	TTSAA	6 cut(s)	104, 290, 305, 677, 815, 1039
AjnI	CCWGG	2 cut(s)	682, 1144
AluBI	AGCT	6 cut(s)	215, 253, 424, 596, 920, 990
AluI	AGCT	6 cut(s)	215, 253, 424, 596, 920, 990
Alw21I	GWGCWC	2 cut(s)	378, 426
AlwI	GGATC	1 cut(s)	1037
AoxI	GGCC	1 cut(s)	842
ApeKI	GCWGC	4 cut(s)	36, 50, 208, 518
ApoI	RAATTY	2 cut(s)	416, 707
AspLEI	GCGC	1 cut(s)	490
AspS9I	GGNCC	1 cut(s)	1142
AsuC2I	CCSGG	1 cut(s)	332
AsuHPI	GGTGA	3 cut(s)	215, 653, 723
AvaII	GGWCC	1 cut(s)	1142
BaeGI	GKGCMC	1 cut(s)	332
BanII	GRGCYC	2 cut(s)	411, 426
BbsI	GAAGAC	2 cut(s)	537, 1046
Bbv12I	GWGCWC	2 cut(s)	378, 426
BbvCI	CCTCAGC	1 cut(s)	921
BbvI	GCAGC	4 cut(s)	23, 62, 220, 530
BccI	CCATC	3 cut(s)	391, 638, 1008
BciT130I	CCWGG	2 cut(s)	684, 1146
BciVI	GTATCC	2 cut(s)	597, 830
BcnI	CCSGG	1 cut(s)	332
BfuI	GTATCC	2 cut(s)	597, 830
BglII	AGATCT	1 cut(s)	297
BisI	GCNGC	4 cut(s)	37, 51, 209, 519
BlsI	GCNGC	4 cut(s)	38, 52, 210, 520
Bme1390I	CCNGG	3 cut(s)	332, 684, 1146
Bme18I	GGWCC	1 cut(s)	1142
BmgT120I	GGNCC	1 cut(s)	1142
BmiI	GGNNCC	2 cut(s)	512, 1123
BmrFI	CCNGG	3 cut(s)	332, 684, 1146
BmsI	GCATC	1 cut(s)	1166
BpiI	GAAGAC	2 cut(s)	537, 1046
Bpu10I	CCTNAGC	1 cut(s)	921
BpuMI	CCSGG	1 cut(s)	332
BsaJI	CCNNGG	2 cut(s)	715, 1145
Bsc4I	CCNNNNNNNGG	7 cut(s)	552, 553, 740, 971, 1012, 1117, 1118
Bse1I	ACTGG	2 cut(s)	664, 845
BseBI	CCWGG	2 cut(s)	684, 1146
BseDI	CCNNGG	2 cut(s)	715, 1145
BseGI	GGATG	1 cut(s)	426
BseLI	CCNNNNNNNGG	7 cut(s)	552, 553, 740, 971, 1012, 1117, 1118
BseMII	CTCAG	1 cut(s)	912
BseNI	ACTGG	2 cut(s)	664, 845
BseRI	GAGGAG	2 cut(s)	423, 426
BseSI	GKGCMC	1 cut(s)	332
BseXI	GCAGC	4 cut(s)	23, 62, 220, 530
BseYI	CCCAGC	2 cut(s)	514, 596
BshFI	GGCC	1 cut(s)	844
BsiHKAI	GWGCWC	2 cut(s)	378, 426
BsiSI	CCGG	1 cut(s)	332
BslI	CCNNNNNNNGG	7 cut(s)	552, 553, 740, 971, 1012, 1117, 1118
BsnI	GGCC	1 cut(s)	844
Bsp1286I	GDGCHC	4 cut(s)	332, 378, 411, 426
Bsp143I	GATC	2 cut(s)	297, 1042
BspANI	GGCC	1 cut(s)	844
BspCNI	CTCAG	1 cut(s)	913
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	2 cut(s)	512, 1123
BspPI	GGATC	1 cut(s)	1037
BsrI	ACTGG	2 cut(s)	664, 845
BssECI	CCNNGG	2 cut(s)	715, 1145
BssMI	GATC	2 cut(s)	297, 1042
BssT1I	CCWWGG	1 cut(s)	715
Bst2UI	CCWGG	2 cut(s)	684, 1146
Bst4CI	ACNGT	5 cut(s)	277, 402, 470, 539, 587
Bst6I	CTCTTC	1 cut(s)	234
BstC8I	GCNNGC	3 cut(s)	213, 492, 988
BstDEI	CTNAG	3 cut(s)	866, 921, 1167
BstEII	GGTNACC	1 cut(s)	647
BstENI	CCTNNNNNAGG	1 cut(s)	969
BstF5I	GGATG	1 cut(s)	426
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	2 cut(s)	300, 1045
BstMBI	GATC	2 cut(s)	297, 1042
BstMWI	GCNNNNNNNGC	2 cut(s)	817, 996
BstNI	CCWGG	2 cut(s)	684, 1146
BstNSI	RCATGY	1 cut(s)	629
BstPI	GGTNACC	1 cut(s)	647
BstSCI	CCNGG	3 cut(s)	330, 682, 1144
BstSLI	GKGCMC	1 cut(s)	332
BstV1I	GCAGC	4 cut(s)	23, 62, 220, 530
BstV2I	GAAGAC	2 cut(s)	537, 1046
BstX2I	RGATCY	2 cut(s)	297, 1042
BstXI	CCANNNNNNTGG	1 cut(s)	659
BstYI	RGATCY	2 cut(s)	297, 1042
BsuI	GTATCC	2 cut(s)	597, 830
BsuRI	GGCC	1 cut(s)	844
BtgZI	GCGATG	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	426
BtsI	GCAGTG	1 cut(s)	880
BtsIMutI	CAGTG	5 cut(s)	107, 578, 592, 657, 880
Cac8I	GCNNGC	3 cut(s)	213, 492, 988
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	1 cut(s)	490
Cfr13I	GGNCC	1 cut(s)	1142
CseI	GACGC	1 cut(s)	114
Csp6I	GTAC	3 cut(s)	466, 722, 745
CviAII	CATG	7 cut(s)	67, 443, 626, 1012, 1080, 1117, 1161
CviQI	GTAC	3 cut(s)	466, 722, 745
DdeI	CTNAG	3 cut(s)	866, 921, 1167
DpnI	GATC	2 cut(s)	299, 1044
DpnII	GATC	2 cut(s)	297, 1042
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Ecl136II	GAGCTC	1 cut(s)	424
Eco130I	CCWWGG	1 cut(s)	715
Eco24I	GRGCYC	2 cut(s)	411, 426
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	1142
Eco53kI	GAGCTC	1 cut(s)	424
Eco91I	GGTNACC	1 cut(s)	647
EcoICRI	GAGCTC	1 cut(s)	424
EcoNI	CCTNNNNNAGG	1 cut(s)	969
EcoO109I	RGGNCCY	1 cut(s)	1142
EcoO65I	GGTNACC	1 cut(s)	647
EcoRII	CCWGG	2 cut(s)	682, 1144
EcoRV	GATATC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	715
EcoT38I	GRGCYC	2 cut(s)	411, 426
ErhI	CCWWGG	1 cut(s)	715
FaeI	CATG	7 cut(s)	70, 446, 629, 1015, 1083, 1120, 1164
FatI	CATG	7 cut(s)	66, 442, 625, 1011, 1079, 1116, 1160
Fnu4HI	GCNGC	4 cut(s)	37, 51, 209, 519
FokI	GGATG	1 cut(s)	413
FriOI	GRGCYC	2 cut(s)	411, 426
Fsp4HI	GCNGC	4 cut(s)	37, 51, 209, 519
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	4 cut(s)	37, 51, 209, 519
GsaI	CCCAGC	2 cut(s)	518, 600
HaeIII	GGCC	1 cut(s)	844
HapII	CCGG	1 cut(s)	332
HgaI	GACGC	1 cut(s)	114
HhaI	GCGC	1 cut(s)	490
Hin1II	CATG	7 cut(s)	70, 446, 629, 1015, 1083, 1120, 1164
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HinfI	GANTC	4 cut(s)	13, 313, 911, 1019
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	3 cut(s)	215, 653, 723
Hpy166II	GTNNAC	1 cut(s)	800
Hpy188I	TCNGA	2 cut(s)	32, 318
Hpy188III	TCNNGA	4 cut(s)	290, 443, 674, 965
Hpy8I	GTNNAC	1 cut(s)	800
Hpy99I	CGWCG	1 cut(s)	360
HpyAV	CCTTC	2 cut(s)	965, 1086
HpyCH4III	ACNGT	5 cut(s)	277, 402, 470, 539, 587
HpyCH4IV	ACGT	1 cut(s)	607
HpyCH4V	TGCA	3 cut(s)	50, 93, 820
HpyF10VI	GCNNNNNNNGC	2 cut(s)	817, 996
HpyF3I	CTNAG	3 cut(s)	866, 921, 1167
HpySE526I	ACGT	1 cut(s)	607
Hsp92II	CATG	7 cut(s)	70, 446, 629, 1015, 1083, 1120, 1164
HspAI	GCGC	1 cut(s)	488
Kzo9I	GATC	2 cut(s)	297, 1042
LmnI	GCTCC	1 cut(s)	485
Lsp1109I	GCAGC	4 cut(s)	23, 62, 220, 530
LweI	GCATC	1 cut(s)	1166
MaeII	ACGT	1 cut(s)	607
MaeIII	GTNAC	4 cut(s)	566, 628, 647, 1066
MalI	GATC	2 cut(s)	299, 1044
MboI	GATC	2 cut(s)	297, 1042
MboII	GAAGA	4 cut(s)	221, 542, 1014, 1046
MfeI	CAATTG	1 cut(s)	6
MflI	RGATCY	2 cut(s)	297, 1042
MhlI	GDGCHC	4 cut(s)	332, 378, 411, 426
MluCI	AATT	7 cut(s)	6, 416, 620, 707, 881, 1087, 1092
MlyI	GAGTC	1 cut(s)	322
MmeI	TCCRAC	1 cut(s)	296
MseI	TTAA	5 cut(s)	56, 219, 501, 1091, 1098
MslI	CAYNNNNRTG	1 cut(s)	447
MspA1I	CMGCKG	1 cut(s)	253
MspI	CCGG	1 cut(s)	332
MspR9I	CCNGG	3 cut(s)	332, 684, 1146
MunI	CAATTG	1 cut(s)	6
MvaI	CCWGG	2 cut(s)	684, 1146
MwoI	GCNNNNNNNGC	2 cut(s)	817, 996
NciI	CCSGG	1 cut(s)	332
NdeII	GATC	2 cut(s)	297, 1042
NlaIII	CATG	7 cut(s)	70, 446, 629, 1015, 1083, 1120, 1164
NlaIV	GGNNCC	2 cut(s)	512, 1123
NmuCI	GTSAC	1 cut(s)	1066
NspI	RCATGY	1 cut(s)	629
PagI	TCATGA	1 cut(s)	442
PciI	ACATGT	1 cut(s)	625
PfeI	GAWTC	3 cut(s)	13, 911, 1019
PflMI	CCANNNNNTGG	1 cut(s)	1012
PkrI	GCNGC	4 cut(s)	38, 52, 210, 520
PleI	GAGTC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	321
PpuMI	RGGWCCY	1 cut(s)	1142
PscI	ACATGT	1 cut(s)	625
Psp124BI	GAGCTC	1 cut(s)	426
Psp5II	RGGWCCY	1 cut(s)	1142
Psp6I	CCWGG	2 cut(s)	682, 1144
PspEI	GGTNACC	1 cut(s)	647
PspFI	CCCAGC	2 cut(s)	514, 596
PspGI	CCWGG	2 cut(s)	682, 1144
PspN4I	GGNNCC	2 cut(s)	512, 1123
PspPI	GGNCC	1 cut(s)	1142
PspPPI	RGGWCCY	1 cut(s)	1142
PsrI	GAACNNNNNNTAC	2 cut(s)	270, 302
PsuI	RGATCY	2 cut(s)	297, 1042
PvuII	CAGCTG	1 cut(s)	253
RsaI	GTAC	3 cut(s)	467, 723, 746
RsaNI	GTAC	3 cut(s)	466, 722, 745
RseI	CAYNNNNRTG	1 cut(s)	447
SacI	GAGCTC	1 cut(s)	426
SaqAI	TTAA	5 cut(s)	56, 219, 501, 1091, 1098
SatI	GCNGC	4 cut(s)	37, 51, 209, 519
Sau3AI	GATC	2 cut(s)	297, 1042
Sau96I	GGNCC	1 cut(s)	1142
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	3 cut(s)	332, 684, 1146
SduI	GDGCHC	4 cut(s)	332, 378, 411, 426
SfaNI	GCATC	1 cut(s)	1166
SinI	GGWCC	1 cut(s)	1142
SmiMI	CAYNNNNRTG	1 cut(s)	447
Sse9I	AATT	7 cut(s)	6, 416, 620, 707, 881, 1087, 1092
SstI	GAGCTC	1 cut(s)	426
StyD4I	CCNGG	3 cut(s)	330, 682, 1144
StyI	CCWWGG	1 cut(s)	715
TaaI	ACNGT	5 cut(s)	277, 402, 470, 539, 587
TaiI	ACGT	1 cut(s)	610
TasI	AATT	7 cut(s)	6, 416, 620, 707, 881, 1087, 1092
TfiI	GAWTC	3 cut(s)	13, 911, 1019
Tru1I	TTAA	5 cut(s)	56, 219, 501, 1091, 1098
Tru9I	TTAA	5 cut(s)	56, 219, 501, 1091, 1098
TscAI	CASTG	5 cut(s)	114, 585, 592, 664, 880
TseFI	GTSAC	1 cut(s)	1066
TseI	GCWGC	4 cut(s)	36, 50, 208, 518
Tsp45I	GTSAC	1 cut(s)	1066
TspDTI	ATGAA	5 cut(s)	5, 55, 543, 984, 1068
TspGWI	ACGGA	2 cut(s)	351, 585
TspRI	CASTG	5 cut(s)	114, 585, 592, 664, 880
Van91I	CCANNNNNTGG	1 cut(s)	1012
VpaK11BI	GGWCC	1 cut(s)	1142
XagI	CCTNNNNNAGG	1 cut(s)	969
XapI	RAATTY	2 cut(s)	416, 707
XceI	RCATGY	1 cut(s)	629
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.