Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004413

Physical Location & Seq

Genomic Coordinates Reverse (-)

59477306 .. 59480786

Gene Structure 3481 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51216

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGAGAATTTTCTATCCCATGGAAATTGTTACACAAAAGTTAGGGGCTTAACTTTTTTCTTAGTAGTAACATTTTTCATATTGGGCAAGGGATTTGTTGATTGCAGAAGAATTAAAACCGTGGAGAACAATAATCCAATCATCAAAAGCATAAAGGGCGATGAAGGTGATGTGATAGATTGCATTGACATCTATAAGCAGCCTGCTCTTAGTCATCCACTTCTCAAAAATCATACTATACAGCTGAATCCGCCAAGTCCGTATCCAAGTGGACTTAATGAAACAGAAAGTTCTCATCAAGATGACGAGCAAGTACTGAAATCTTGGTTATTGAATGAAGAGTGCCCAGAAGGAACAATCCCCATTCTTCGAACTCAGGCTTTTAATAGTTCTTTTCCTAAATCTAGCCCACCTTTCAATGGAAGCAACGTTGAGTTCACGTCTGCATCTGGTCATGAGTACGCCGTAGCTAGTCTTTCAGGTGGCCAATATTACGGAGCACACGCATCTGTGAACGTATGGAGCCCTTTATCAGTTTTTGAGGAGAATAGTATATCCCAGATATGGGTAGCGGGAGGTCATGAACAAGCACGAAGTACTGTTGAAGCTGGGTGGAAAGGCCATGGTTACCAAGATGGTTGCTACAATCTTCAATGTCCTGGTTTCGTCCAAGTAAACAGAAAGTTTGCCCTAGGTTTACCCATTAAACCTGTTTCAATCTACAACGGCAAACAATTTGAAATATTCATAAGTATATACAAGCACCAATCGACTGGACAGTGGTGGGTTATGTTGCAAGATCAAGCATTAGGATACTGGCCAGACAAAATCTTACCAAGTCTGAGAGGCAGTGCTGACGCGGTTAGCTGGGGTGGTGAAATTTACAATTCAGAAATTGGAGGTCGTCACACATCAACTCAGATGGGGAGTGGTCATTTCCCGAGTGAAGGCTATGGCAAAGCAAGCTATTTTCGAAATATTCAGTACTTGGCCAACTCTGGAAAGTTTGTAGATGCACAAGGGCTTATACCCTATGTCACAAAGCCTCCATGCTACAACCTTATTATGAAAAATAAAGCCCCAGGATTTGGAAACCATTTCTATTATGGGGGATTTGGATATTCAGAAAGATGCCCTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

380

Amino Acids

42.2

Weight (kDa)

6.86

Isoelectric Point (pI)

37.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Neprosin_AP	PF14365	50 - 157	3.3e-23	Neprosin activation peptide
Neprosin	PF03080	205 - 371	1e-56	Neprosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17750 AT2G44220 AT2G44240
fragaria_vesca	FvH4_6g32790
malus_domestica	MD09G1198100.v1.1
prunus_persica	Prupe.3G054100_v2.0.a1 Prupe.3G054200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0141911 RchiOBHm_Chr2g0141931 RchiOBHm_Chr2g0141971
rosa_laevigata	RLG00000019942
rosa_multiflora	Rmu_co8265735.1_g000001 Rmu_co8330971.1_g000001 Rmu_sc0001287.1_g000036 Rmu_sc0004757.1_g000021 Rmu_sc0009946.1_g000003 Rmu_sc0009946.1_g000009
rosa_roxburghii	Rroxscaffold_2G00103690 Rroxscaffold_2G00103720
rosa_rugosa	Rorug02G0369200 Rorug02G0369300 Rorug02G0369400
rosa_samantha	Rh2AG421400 Rh2AG421600 Rh2AG421700 Rh2AG422100 Rh2BG431900 Rh2CG408700 Rh2CG408900 Rh2DG441900
rosa_wichuraiana	Rw2G034570 Rw2G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1088
AccII	CGCG	1 cut(s)	860
AciI	CCGC	3 cut(s)	251, 572, 860
AclI	AACGTT	1 cut(s)	429
AcoI	YGGCCR	3 cut(s)	484, 818, 990
AcsI	RAATTY	2 cut(s)	7, 879
AfaI	GTAC	4 cut(s)	315, 461, 598, 986
AfiI	CCNNNNNNNGG	5 cut(s)	419, 564, 565, 947, 1088
AgsI	TTSAA	6 cut(s)	334, 418, 605, 653, 717, 740
AjiI	CACGTC	1 cut(s)	441
AjnI	CCWGG	2 cut(s)	658, 1081
AluBI	AGCT	5 cut(s)	244, 470, 608, 867, 966
AluI	AGCT	5 cut(s)	244, 470, 608, 867, 966
Alw21I	GWGCWC	1 cut(s)	502
Ama87I	CYCGRG	1 cut(s)	940
AoxI	GGCC	4 cut(s)	484, 619, 818, 990
ApeKI	GCWGC	1 cut(s)	199
ApoI	RAATTY	2 cut(s)	7, 879
AspA2I	CCTAGG	1 cut(s)	691
AsuHPI	GGTGA	2 cut(s)	179, 887
AsuII	TTCGAA	2 cut(s)	370, 973
AvaI	CYCGRG	1 cut(s)	940
AvrII	CCTAGG	1 cut(s)	691
BaeGI	GKGCMC	1 cut(s)	347
BalI	TGGCCA	3 cut(s)	486, 820, 992
BanII	GRGCYC	1 cut(s)	527
Bbv12I	GWGCWC	1 cut(s)	502
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	2 cut(s)	629, 916
BceAI	ACGGC	2 cut(s)	449, 742
BciT130I	CCWGG	2 cut(s)	660, 1083
BciVI	GTATCC	2 cut(s)	273, 806
BfaI	CTAG	3 cut(s)	405, 471, 692
BfuI	GTATCC	2 cut(s)	273, 806
BisI	GCNGC	1 cut(s)	200
BlnI	CCTAGG	1 cut(s)	691
BlsI	GCNGC	1 cut(s)	201
BmcAI	AGTACT	3 cut(s)	315, 598, 986
Bme1390I	CCNGG	2 cut(s)	660, 1083
BmeT110I	CYCGRG	1 cut(s)	940
BmgBI	CACGTC	1 cut(s)	441
BmiI	GGNNCC	1 cut(s)	524
BmrFI	CCNGG	2 cut(s)	660, 1083
BmsI	GCATC	4 cut(s)	455, 515, 1003, 1121
Bpu14I	TTCGAA	2 cut(s)	370, 973
BsaJI	CCNNGG	5 cut(s)	19, 120, 622, 691, 1081
BsaXI	ACNNNNNCTCC	2 cut(s)	1030, 1060
Bsc4I	CCNNNNNNNGG	5 cut(s)	419, 564, 565, 947, 1088
Bse1I	ACTGG	2 cut(s)	778, 821
BseBI	CCWGG	2 cut(s)	660, 1083
BseDI	CCNNGG	5 cut(s)	19, 120, 622, 691, 1081
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	5 cut(s)	419, 564, 565, 947, 1088
BseMII	CTCAG	3 cut(s)	389, 833, 932
BseNI	ACTGG	2 cut(s)	778, 821
BseRI	GAGGAG	1 cut(s)	557
BseSI	GKGCMC	1 cut(s)	347
BseXI	GCAGC	1 cut(s)	211
BseYI	CCCAGC	2 cut(s)	608, 867
Bsh1236I	CGCG	1 cut(s)	860
BshFI	GGCC	4 cut(s)	486, 621, 820, 992
BsiHKAI	GWGCWC	1 cut(s)	502
BsiHKCI	CYCGRG	1 cut(s)	940
BslI	CCNNNNNNNGG	5 cut(s)	419, 564, 565, 947, 1088
BsnI	GGCC	4 cut(s)	486, 621, 820, 992
BsoBI	CYCGRG	1 cut(s)	940
Bsp119I	TTCGAA	2 cut(s)	370, 973
Bsp1286I	GDGCHC	3 cut(s)	347, 502, 527
Bsp143I	GATC	1 cut(s)	799
Bsp19I	CCATGG	2 cut(s)	19, 622
BspACI	CCGC	3 cut(s)	251, 572, 860
BspANI	GGCC	4 cut(s)	486, 621, 820, 992
BspCNI	CTCAG	3 cut(s)	388, 834, 931
BspFNI	CGCG	1 cut(s)	860
BspHI	TCATGA	2 cut(s)	454, 580
BspLI	GGNNCC	1 cut(s)	524
BspT104I	TTCGAA	2 cut(s)	370, 973
BsrI	ACTGG	2 cut(s)	778, 821
BssECI	CCNNGG	5 cut(s)	19, 120, 622, 691, 1081
BssMI	GATC	1 cut(s)	799
BssT1I	CCWWGG	3 cut(s)	19, 622, 691
Bst2UI	CCWGG	2 cut(s)	660, 1083
Bst4CI	ACNGT	3 cut(s)	121, 601, 780
Bst6I	CTCTTC	1 cut(s)	333
BstBI	TTCGAA	2 cut(s)	370, 973
BstC8I	GCNNGC	2 cut(s)	204, 964
BstDEI	CTNAG	5 cut(s)	61, 209, 375, 842, 918
BstDSI	CCRYGG	3 cut(s)	19, 120, 622
BstEII	GGTNACC	1 cut(s)	626
BstF5I	GGATG	1 cut(s)	214
BstFNI	CGCG	1 cut(s)	860
BstKTI	GATC	1 cut(s)	802
BstMBI	GATC	1 cut(s)	799
BstMWI	GCNNNNNNNGC	3 cut(s)	156, 250, 963
BstNI	CCWGG	2 cut(s)	660, 1083
BstPI	GGTNACC	1 cut(s)	626
BstSCI	CCNGG	2 cut(s)	658, 1081
BstSLI	GKGCMC	1 cut(s)	347
BstUI	CGCG	1 cut(s)	860
BstV1I	GCAGC	1 cut(s)	211
BstXI	CCANNNNNNTGG	1 cut(s)	773
BsuI	GTATCC	2 cut(s)	273, 806
BsuRI	GGCC	4 cut(s)	486, 621, 820, 992
BtgI	CCRYGG	3 cut(s)	19, 120, 622
BtgZI	GCGATG	1 cut(s)	174
BtrI	CACGTC	1 cut(s)	441
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	1 cut(s)	856
BtsIMutI	CAGTG	2 cut(s)	785, 856
Cac8I	GCNNGC	2 cut(s)	204, 964
CciI	TCATGA	2 cut(s)	454, 580
CseI	GACGC	1 cut(s)	866
Csp6I	GTAC	4 cut(s)	314, 460, 597, 985
CviAII	CATG	5 cut(s)	20, 455, 581, 623, 1050
CviQI	GTAC	4 cut(s)	314, 460, 597, 985
DdeI	CTNAG	5 cut(s)	61, 209, 375, 842, 918
DpnI	GATC	1 cut(s)	801
DpnII	GATC	1 cut(s)	799
EaeI	YGGCCR	3 cut(s)	484, 818, 990
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
EciI	GGCGGA	1 cut(s)	240
Eco130I	CCWWGG	3 cut(s)	19, 622, 691
Eco24I	GRGCYC	1 cut(s)	527
Eco88I	CYCGRG	1 cut(s)	940
Eco91I	GGTNACC	1 cut(s)	626
EcoO65I	GGTNACC	1 cut(s)	626
EcoRII	CCWGG	2 cut(s)	658, 1081
EcoT14I	CCWWGG	3 cut(s)	19, 622, 691
EcoT38I	GRGCYC	1 cut(s)	527
ErhI	CCWWGG	3 cut(s)	19, 622, 691
FaeI	CATG	5 cut(s)	23, 458, 584, 626, 1053
FatI	CATG	5 cut(s)	19, 454, 580, 622, 1049
FauI	CCCGC	1 cut(s)	565
Fnu4HI	GCNGC	1 cut(s)	200
FokI	GGATG	1 cut(s)	201
FriOI	GRGCYC	1 cut(s)	527
Fsp4HI	GCNGC	1 cut(s)	200
FspBI	CTAG	3 cut(s)	405, 471, 692
GluI	GCNGC	1 cut(s)	200
GsaI	CCCAGC	2 cut(s)	612, 871
HaeIII	GGCC	4 cut(s)	486, 621, 820, 992
HgaI	GACGC	1 cut(s)	866
Hin1II	CATG	5 cut(s)	23, 458, 584, 626, 1053
HinfI	GANTC	1 cut(s)	247
HphI	GGTGA	2 cut(s)	179, 887
Hpy166II	GTNNAC	5 cut(s)	272, 438, 514, 676, 698
Hpy188I	TCNGA	4 cut(s)	843, 892, 921, 1126
Hpy188III	TCNNGA	5 cut(s)	299, 455, 581, 940, 999
Hpy8I	GTNNAC	5 cut(s)	272, 438, 514, 676, 698
HpyAV	CCTTC	3 cut(s)	158, 344, 941
HpyCH4III	ACNGT	3 cut(s)	121, 601, 780
HpyCH4IV	ACGT	3 cut(s)	429, 440, 516
HpyCH4V	TGCA	5 cut(s)	105, 183, 446, 796, 1016
HpyF10VI	GCNNNNNNNGC	3 cut(s)	156, 250, 963
HpyF3I	CTNAG	5 cut(s)	61, 209, 375, 842, 918
HpySE526I	ACGT	3 cut(s)	429, 440, 516
Hsp92II	CATG	5 cut(s)	23, 458, 584, 626, 1053
Kzo9I	GATC	1 cut(s)	799
LmnI	GCTCC	2 cut(s)	497, 522
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	4 cut(s)	455, 515, 1003, 1121
MaeI	CTAG	3 cut(s)	405, 471, 692
MaeII	ACGT	3 cut(s)	429, 440, 516
MaeIII	GTNAC	5 cut(s)	29, 67, 626, 905, 1036
MalI	GATC	1 cut(s)	801
MboI	GATC	1 cut(s)	799
MboII	GAAGA	4 cut(s)	120, 350, 359, 641
MhlI	GDGCHC	3 cut(s)	347, 502, 527
MlsI	TGGCCA	3 cut(s)	486, 820, 992
MluCI	AATT	7 cut(s)	7, 25, 111, 734, 879, 886, 894
MluNI	TGGCCA	3 cut(s)	486, 820, 992
MnlI	CCTC	5 cut(s)	535, 569, 839, 893, 1056
Mox20I	TGGCCA	3 cut(s)	486, 820, 992
MscI	TGGCCA	3 cut(s)	486, 820, 992
MseI	TTAA	5 cut(s)	50, 114, 276, 384, 705
MslI	CAYNNNNRTG	1 cut(s)	300
Msp20I	TGGCCA	3 cut(s)	486, 820, 992
MspA1I	CMGCKG	1 cut(s)	244
MspR9I	CCNGG	2 cut(s)	660, 1083
MvaI	CCWGG	2 cut(s)	660, 1083
MvnI	CGCG	1 cut(s)	860
MwoI	GCNNNNNNNGC	3 cut(s)	156, 250, 963
NcoI	CCATGG	2 cut(s)	19, 622
NdeII	GATC	1 cut(s)	799
NlaIII	CATG	5 cut(s)	23, 458, 584, 626, 1053
NlaIV	GGNNCC	1 cut(s)	524
NmuCI	GTSAC	2 cut(s)	905, 1036
NspV	TTCGAA	2 cut(s)	370, 973
PagI	TCATGA	2 cut(s)	454, 580
PfeI	GAWTC	1 cut(s)	247
PflMI	CCANNNNNTGG	1 cut(s)	1088
PkrI	GCNGC	1 cut(s)	201
Psp1406I	AACGTT	1 cut(s)	429
Psp6I	CCWGG	2 cut(s)	658, 1081
PspEI	GGTNACC	1 cut(s)	626
PspFI	CCCAGC	2 cut(s)	608, 867
PspGI	CCWGG	2 cut(s)	658, 1081
PspN4I	GGNNCC	1 cut(s)	524
PvuII	CAGCTG	1 cut(s)	244
RsaI	GTAC	4 cut(s)	315, 461, 598, 986
RsaNI	GTAC	4 cut(s)	314, 460, 597, 985
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	5 cut(s)	50, 114, 276, 384, 705
SatI	GCNGC	1 cut(s)	200
Sau3AI	GATC	1 cut(s)	799
ScaI	AGTACT	3 cut(s)	315, 598, 986
ScrFI	CCNGG	2 cut(s)	660, 1083
SduI	GDGCHC	3 cut(s)	347, 502, 527
SfaNI	GCATC	4 cut(s)	455, 515, 1003, 1121
SfuI	TTCGAA	2 cut(s)	370, 973
SmiMI	CAYNNNNRTG	1 cut(s)	300
Sse9I	AATT	7 cut(s)	7, 25, 111, 734, 879, 886, 894
SsiI	CCGC	3 cut(s)	251, 572, 860
SspI	AATATT	3 cut(s)	491, 744, 979
SspMI	CTAG	3 cut(s)	405, 471, 692
StyD4I	CCNGG	2 cut(s)	658, 1081
StyI	CCWWGG	3 cut(s)	19, 622, 691
TaaI	ACNGT	3 cut(s)	121, 601, 780
TaiI	ACGT	3 cut(s)	432, 443, 519
TaqI	TCGA	3 cut(s)	370, 770, 973
TasI	AATT	7 cut(s)	7, 25, 111, 734, 879, 886, 894
TatI	WGTACW	3 cut(s)	313, 596, 984
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	5 cut(s)	50, 114, 276, 384, 705
Tru9I	TTAA	5 cut(s)	50, 114, 276, 384, 705
TscAI	CASTG	2 cut(s)	785, 856
TseFI	GTSAC	2 cut(s)	905, 1036
TseI	GCWGC	1 cut(s)	199
Tsp45I	GTSAC	2 cut(s)	905, 1036
TspDTI	ATGAA	7 cut(s)	67, 177, 294, 351, 597, 736, 1082
TspGWI	ACGGA	2 cut(s)	249, 510
TspRI	CASTG	2 cut(s)	785, 856
Van91I	CCANNNNNTGG	1 cut(s)	1088
XapI	RAATTY	2 cut(s)	7, 879
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1103
XmaJI	CCTAGG	1 cut(s)	691
XspI	CTAG	3 cut(s)	405, 471, 692
ZrmI	AGTACT	3 cut(s)	315, 598, 986

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.