Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004413

Physical Location & Seq

Genomic Coordinates Reverse (-)

58906772 .. 58908866

Gene Structure 2095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019942

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGAGAATTTTCTATCCCATGGAAATTGTTACGCAAAAGTTAGGGGCTTAACTTTTTTCTTAGTAGTAACATTTTTCATATTGAGCAAGGGCGATGAAGGTGATGTGATAGATTGCATTGACATCTATAAGCAGCCTGCTCTTAGTCATCCACTTCTCAAAAATCATACTATACAGCTGAATCCGCCAAGTCCGTATCCAAGTGGAAATAATGAAACAGAAGGTTCTCATCAAGATGACGAGCAAGTACTGCAATCTTGGTTATTGAATGAAGAGTGCCCAGAAGGAACAATCCCCATTCTTCGAACTCAGGCTTTTAATAGTTCTTTTCCTAAATCTAGCCCACCTTTCAATGGAAGCAACGTTGAGTTCACGCCTGCATCTGGTCACGAGTACGCCGTAGCTAGTCTTTTAGGTGGCCAATATTACGGAGCACACGCATCTGTGAACGTATGGAGCCCTTTATCAGTTTTTGAGGAGAATAGTATATCCCAGATATGGGTAGCGGGAGGTCATGGACAAGCACGAAGTACTGTTGAAGCTGGGTGGAAAATTAATTCGGCTGACCAGCAAACAAGGTTCTTCATATTCTGGACAGGCCATGGTTACCAAGATGGTTGCTACAATCTTCAATGTCCTGGTTTCGTCCAAGTAAACAGAAAGTTTGCCCTAGGTCTACCCATTAAACCTGTTTCAATCTACAACGGCAAACAAGTTGAAATATTCATAAGTATATACAAGCACCAATCGACTGGACAGTGGTGGGTTATGTTGCAAGATCAAGCATTAGGATACTGGCCAGACAAAATCTTACCAAGTCTGAGAGGCAGTGCTGACGCGGTTAGCTGGGGTGGTGAAATTTACAATTCAGAAATTGGAGGTCGTCACACTTCAACTCAGATGGGGAGTGGTCATTTCCCGAGTGAAGGCTATGGCAAAGCAAGCTATTTTCGAAATATTCAGTACTTGGCCGACTCTGGAAAGTTTGTAGATGCACTAGGGCTTATACCCTATGTCACAAAGCCTCCATGCTACAACCTTATTATGAAAAATAAAGCCCCAGGATTTGGAAACCATTTCTATTACGGGGGATTTGGATATTCAGCAAGATGCCCTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

374

Amino Acids

41.35

Weight (kDa)

6.3

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Neprosin_AP	PF14365	32 - 105	8.8e-23	Neprosin activation peptide
Neprosin	PF03080	160 - 364	1e-68	Neprosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17750 AT2G44220 AT2G44240
fragaria_vesca	FvH4_6g32790
malus_domestica	MD09G1198100.v1.1
prunus_persica	Prupe.3G054100_v2.0.a1 Prupe.3G054200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0141911 RchiOBHm_Chr2g0141931 RchiOBHm_Chr2g0141971
rosa_laevigata	RLG00000019942
rosa_multiflora	Rmu_co8265735.1_g000001 Rmu_co8330971.1_g000001 Rmu_sc0001287.1_g000036 Rmu_sc0004757.1_g000021 Rmu_sc0009946.1_g000003 Rmu_sc0009946.1_g000009
rosa_roxburghii	Rroxscaffold_2G00103690 Rroxscaffold_2G00103720
rosa_rugosa	Rorug02G0369200 Rorug02G0369300 Rorug02G0369400
rosa_samantha	Rh2AG421400 Rh2AG421600 Rh2AG421700 Rh2AG422100 Rh2BG431900 Rh2CG408700 Rh2CG408900 Rh2DG441900
rosa_wichuraiana	Rw2G034570 Rw2G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1067
AccI	GTMKAC	1 cut(s)	676
AccII	CGCG	1 cut(s)	839
AciI	CCGC	3 cut(s)	185, 506, 839
AclI	AACGTT	1 cut(s)	363
AcoI	YGGCCR	3 cut(s)	418, 797, 969
AcsI	RAATTY	2 cut(s)	7, 858
AfaI	GTAC	4 cut(s)	249, 395, 532, 965
AfiI	CCNNNNNNNGG	6 cut(s)	353, 383, 498, 499, 926, 1067
AgsI	TTSAA	7 cut(s)	268, 352, 539, 632, 696, 719, 894
AjnI	CCWGG	2 cut(s)	637, 1060
AluBI	AGCT	5 cut(s)	178, 404, 542, 846, 945
AluI	AGCT	5 cut(s)	178, 404, 542, 846, 945
Alw21I	GWGCWC	1 cut(s)	436
Ama87I	CYCGRG	1 cut(s)	919
AoxI	GGCC	4 cut(s)	418, 598, 797, 969
ApeKI	GCWGC	1 cut(s)	133
ApoI	RAATTY	2 cut(s)	7, 858
AseI	ATTAAT	1 cut(s)	555
AspA2I	CCTAGG	1 cut(s)	670
AsuHPI	GGTGA	2 cut(s)	113, 866
AsuII	TTCGAA	2 cut(s)	304, 952
AvaI	CYCGRG	1 cut(s)	919
AvrII	CCTAGG	1 cut(s)	670
BaeGI	GKGCMC	1 cut(s)	281
BalI	TGGCCA	2 cut(s)	420, 799
BanII	GRGCYC	1 cut(s)	461
BauI	CACGAG	1 cut(s)	389
Bbv12I	GWGCWC	1 cut(s)	436
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	2 cut(s)	608, 895
BceAI	ACGGC	2 cut(s)	383, 721
BciT130I	CCWGG	2 cut(s)	639, 1062
BciVI	GTATCC	2 cut(s)	207, 785
BfaI	CTAG	4 cut(s)	339, 405, 671, 998
BfuI	GTATCC	2 cut(s)	207, 785
BisI	GCNGC	1 cut(s)	134
BlnI	CCTAGG	1 cut(s)	670
BlsI	GCNGC	1 cut(s)	135
BmcAI	AGTACT	3 cut(s)	249, 532, 965
Bme1390I	CCNGG	2 cut(s)	639, 1062
BmeT110I	CYCGRG	1 cut(s)	919
BmiI	GGNNCC	1 cut(s)	458
BmrFI	CCNGG	2 cut(s)	639, 1062
BmsI	GCATC	4 cut(s)	389, 449, 982, 1100
Bpu14I	TTCGAA	2 cut(s)	304, 952
BsaJI	CCNNGG	4 cut(s)	19, 601, 670, 1060
BsaXI	ACNNNNNCTCC	2 cut(s)	1009, 1039
Bsc4I	CCNNNNNNNGG	6 cut(s)	353, 383, 498, 499, 926, 1067
Bse1I	ACTGG	2 cut(s)	757, 800
BseBI	CCWGG	2 cut(s)	639, 1062
BseDI	CCNNGG	4 cut(s)	19, 601, 670, 1060
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	6 cut(s)	353, 383, 498, 499, 926, 1067
BseMII	CTCAG	3 cut(s)	323, 812, 911
BseNI	ACTGG	2 cut(s)	757, 800
BseRI	GAGGAG	1 cut(s)	491
BseSI	GKGCMC	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	145
BseYI	CCCAGC	2 cut(s)	542, 846
Bsh1236I	CGCG	1 cut(s)	839
BshFI	GGCC	4 cut(s)	420, 600, 799, 971
BsiHKAI	GWGCWC	1 cut(s)	436
BsiHKCI	CYCGRG	1 cut(s)	919
BslI	CCNNNNNNNGG	6 cut(s)	353, 383, 498, 499, 926, 1067
BsnI	GGCC	4 cut(s)	420, 600, 799, 971
BsoBI	CYCGRG	1 cut(s)	919
Bsp119I	TTCGAA	2 cut(s)	304, 952
Bsp1286I	GDGCHC	3 cut(s)	281, 436, 461
Bsp143I	GATC	1 cut(s)	778
Bsp19I	CCATGG	2 cut(s)	19, 601
BspACI	CCGC	3 cut(s)	185, 506, 839
BspANI	GGCC	4 cut(s)	420, 600, 799, 971
BspCNI	CTCAG	3 cut(s)	322, 813, 910
BspFNI	CGCG	1 cut(s)	839
BspLI	GGNNCC	1 cut(s)	458
BspT104I	TTCGAA	2 cut(s)	304, 952
BsrI	ACTGG	2 cut(s)	757, 800
BssECI	CCNNGG	4 cut(s)	19, 601, 670, 1060
BssMI	GATC	1 cut(s)	778
BssSI	CACGAG	1 cut(s)	389
BssT1I	CCWWGG	3 cut(s)	19, 601, 670
Bst2BI	CACGAG	1 cut(s)	389
Bst2UI	CCWGG	2 cut(s)	639, 1062
Bst4CI	ACNGT	2 cut(s)	535, 759
Bst6I	CTCTTC	1 cut(s)	267
BstAPI	GCANNNNNTGC	1 cut(s)	250
BstBI	TTCGAA	2 cut(s)	304, 952
BstC8I	GCNNGC	3 cut(s)	138, 378, 943
BstDEI	CTNAG	5 cut(s)	61, 143, 309, 821, 897
BstDSI	CCRYGG	2 cut(s)	19, 601
BstEII	GGTNACC	1 cut(s)	605
BstF5I	GGATG	1 cut(s)	148
BstFNI	CGCG	1 cut(s)	839
BstKTI	GATC	1 cut(s)	781
BstMBI	GATC	1 cut(s)	778
BstMWI	GCNNNNNNNGC	3 cut(s)	184, 250, 942
BstNI	CCWGG	2 cut(s)	639, 1062
BstPI	GGTNACC	1 cut(s)	605
BstSCI	CCNGG	2 cut(s)	637, 1060
BstSLI	GKGCMC	1 cut(s)	281
BstUI	CGCG	1 cut(s)	839
BstV1I	GCAGC	1 cut(s)	145
BstXI	CCANNNNNNTGG	1 cut(s)	752
BsuI	GTATCC	2 cut(s)	207, 785
BsuRI	GGCC	4 cut(s)	420, 600, 799, 971
BtgI	CCRYGG	2 cut(s)	19, 601
BtgZI	GCGATG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	148
BtsI	GCAGTG	1 cut(s)	835
BtsIMutI	CAGTG	2 cut(s)	764, 835
Cac8I	GCNNGC	3 cut(s)	138, 378, 943
CseI	GACGC	1 cut(s)	845
Csp6I	GTAC	4 cut(s)	248, 394, 531, 964
CviAII	CATG	4 cut(s)	20, 515, 602, 1029
CviQI	GTAC	4 cut(s)	248, 394, 531, 964
DdeI	CTNAG	5 cut(s)	61, 143, 309, 821, 897
DpnI	GATC	1 cut(s)	780
DpnII	GATC	1 cut(s)	778
EaeI	YGGCCR	3 cut(s)	418, 797, 969
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
EciI	GGCGGA	1 cut(s)	174
Eco130I	CCWWGG	3 cut(s)	19, 601, 670
Eco24I	GRGCYC	1 cut(s)	461
Eco88I	CYCGRG	1 cut(s)	919
Eco91I	GGTNACC	1 cut(s)	605
EcoO65I	GGTNACC	1 cut(s)	605
EcoRII	CCWGG	2 cut(s)	637, 1060
EcoT14I	CCWWGG	3 cut(s)	19, 601, 670
EcoT38I	GRGCYC	1 cut(s)	461
ErhI	CCWWGG	3 cut(s)	19, 601, 670
FaeI	CATG	4 cut(s)	23, 518, 605, 1032
FatI	CATG	4 cut(s)	19, 514, 601, 1028
FauI	CCCGC	1 cut(s)	499
FblI	GTMKAC	1 cut(s)	676
Fnu4HI	GCNGC	1 cut(s)	134
FokI	GGATG	1 cut(s)	135
FriOI	GRGCYC	1 cut(s)	461
Fsp4HI	GCNGC	1 cut(s)	134
FspBI	CTAG	4 cut(s)	339, 405, 671, 998
GluI	GCNGC	1 cut(s)	134
GsaI	CCCAGC	2 cut(s)	546, 850
HaeIII	GGCC	4 cut(s)	420, 600, 799, 971
HgaI	GACGC	1 cut(s)	845
Hin1II	CATG	4 cut(s)	23, 518, 605, 1032
HinfI	GANTC	2 cut(s)	181, 974
HphI	GGTGA	2 cut(s)	113, 866
Hpy166II	GTNNAC	4 cut(s)	372, 448, 655, 677
Hpy188I	TCNGA	3 cut(s)	822, 871, 900
Hpy188III	TCNNGA	5 cut(s)	233, 389, 592, 919, 978
Hpy8I	GTNNAC	4 cut(s)	372, 448, 655, 677
HpyAV	CCTTC	4 cut(s)	92, 215, 278, 920
HpyCH4III	ACNGT	2 cut(s)	535, 759
HpyCH4IV	ACGT	2 cut(s)	363, 450
HpyCH4V	TGCA	5 cut(s)	117, 253, 380, 775, 995
HpyF10VI	GCNNNNNNNGC	3 cut(s)	184, 250, 942
HpyF3I	CTNAG	5 cut(s)	61, 143, 309, 821, 897
HpySE526I	ACGT	2 cut(s)	363, 450
Hsp92II	CATG	4 cut(s)	23, 518, 605, 1032
Kzo9I	GATC	1 cut(s)	778
LmnI	GCTCC	2 cut(s)	431, 456
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	4 cut(s)	389, 449, 982, 1100
MaeI	CTAG	4 cut(s)	339, 405, 671, 998
MaeII	ACGT	2 cut(s)	363, 450
MaeIII	GTNAC	6 cut(s)	29, 67, 386, 605, 884, 1015
MalI	GATC	1 cut(s)	780
MboI	GATC	1 cut(s)	778
MboII	GAAGA	4 cut(s)	284, 293, 574, 620
MhlI	GDGCHC	3 cut(s)	281, 436, 461
MlsI	TGGCCA	2 cut(s)	420, 799
MluCI	AATT	7 cut(s)	7, 25, 552, 556, 858, 865, 873
MluNI	TGGCCA	2 cut(s)	420, 799
MlyI	GAGTC	1 cut(s)	968
MnlI	CCTC	5 cut(s)	469, 503, 818, 872, 1035
Mox20I	TGGCCA	2 cut(s)	420, 799
MscI	TGGCCA	2 cut(s)	420, 799
MseI	TTAA	4 cut(s)	50, 318, 555, 684
MslI	CAYNNNNRTG	1 cut(s)	234
Msp20I	TGGCCA	2 cut(s)	420, 799
MspA1I	CMGCKG	1 cut(s)	178
MspR9I	CCNGG	2 cut(s)	639, 1062
MvaI	CCWGG	2 cut(s)	639, 1062
MvnI	CGCG	1 cut(s)	839
MwoI	GCNNNNNNNGC	3 cut(s)	184, 250, 942
NcoI	CCATGG	2 cut(s)	19, 601
NdeII	GATC	1 cut(s)	778
NlaIII	CATG	4 cut(s)	23, 518, 605, 1032
NlaIV	GGNNCC	1 cut(s)	458
NmuCI	GTSAC	3 cut(s)	386, 884, 1015
NspV	TTCGAA	2 cut(s)	304, 952
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	181
PflMI	CCANNNNNTGG	1 cut(s)	1067
PkrI	GCNGC	1 cut(s)	135
PleI	GAGTC	1 cut(s)	968
PpsI	GAGTC	1 cut(s)	968
PshBI	ATTAAT	1 cut(s)	555
Psp1406I	AACGTT	1 cut(s)	363
Psp6I	CCWGG	2 cut(s)	637, 1060
PspEI	GGTNACC	1 cut(s)	605
PspFI	CCCAGC	2 cut(s)	542, 846
PspGI	CCWGG	2 cut(s)	637, 1060
PspN4I	GGNNCC	1 cut(s)	458
PvuII	CAGCTG	1 cut(s)	178
RsaI	GTAC	4 cut(s)	249, 395, 532, 965
RsaNI	GTAC	4 cut(s)	248, 394, 531, 964
RseI	CAYNNNNRTG	1 cut(s)	234
SaqAI	TTAA	4 cut(s)	50, 318, 555, 684
SatI	GCNGC	1 cut(s)	134
Sau3AI	GATC	1 cut(s)	778
ScaI	AGTACT	3 cut(s)	249, 532, 965
SchI	GAGTC	1 cut(s)	968
ScrFI	CCNGG	2 cut(s)	639, 1062
SduI	GDGCHC	3 cut(s)	281, 436, 461
SfaNI	GCATC	4 cut(s)	389, 449, 982, 1100
SfuI	TTCGAA	2 cut(s)	304, 952
SmiMI	CAYNNNNRTG	1 cut(s)	234
Sse9I	AATT	7 cut(s)	7, 25, 552, 556, 858, 865, 873
SsiI	CCGC	3 cut(s)	185, 506, 839
SspI	AATATT	3 cut(s)	425, 723, 958
SspMI	CTAG	4 cut(s)	339, 405, 671, 998
StyD4I	CCNGG	2 cut(s)	637, 1060
StyI	CCWWGG	3 cut(s)	19, 601, 670
TaaI	ACNGT	2 cut(s)	535, 759
TaiI	ACGT	2 cut(s)	366, 453
TaqI	TCGA	3 cut(s)	304, 749, 952
TasI	AATT	7 cut(s)	7, 25, 552, 556, 858, 865, 873
TatI	WGTACW	3 cut(s)	247, 530, 963
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	4 cut(s)	50, 318, 555, 684
Tru9I	TTAA	4 cut(s)	50, 318, 555, 684
TscAI	CASTG	2 cut(s)	764, 835
TseFI	GTSAC	3 cut(s)	386, 884, 1015
TseI	GCWGC	1 cut(s)	133
Tsp45I	GTSAC	3 cut(s)	386, 884, 1015
TspDTI	ATGAA	7 cut(s)	67, 111, 228, 285, 574, 715, 1061
TspGWI	ACGGA	2 cut(s)	183, 444
TspRI	CASTG	2 cut(s)	764, 835
Van91I	CCANNNNNTGG	1 cut(s)	1067
VspI	ATTAAT	1 cut(s)	555
XapI	RAATTY	2 cut(s)	7, 858
XmaJI	CCTAGG	1 cut(s)	670
XmiI	GTMKAC	1 cut(s)	676
XspI	CTAG	4 cut(s)	339, 405, 671, 998
ZrmI	AGTACT	3 cut(s)	249, 532, 965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.