Rh2AG421400

Oxidoreductase family, C-terminal alpha/beta domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004413
Physical Location & Seq
Reverse (-)
62552414 .. 62572676
20263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG421400.1

Sequence Viewer

Length: 981 bp
ATGCCTGTTGAACGGGCTTTTGCTTGTGATTTTGACCTCTTCCCCTATGTTAGCATTGTAGCATTGTCTAGTATTCTTGGAGCTGGTACTTTTGTGAAGACCCAATACATTCCAAGGCTGGCTGAGATCTCTAACCTTGTCAATCTTAAAGGCATTTGGAGCCGTTTTGAGGAATCTGCTAGAGGAGCAGCTGAGATTGCTGGGAAACATTTTCCAGGAGCTGAATGCAAATGGGGTGATAAGGGTCTTGAGAAAATTATTGCAGATGGTTCAACTCTTGGTGTTGCTGTGAAAGCACATACTGATCCTTTCACACGAGGGGCCATCGGTGGATATGTATTGCAGAAGTGGCAGCATCTCAAGAGGCTCGTCGTCGGTTGCAGACTTGTCGCTGGTTGCAGGCCCTCGGTTGCTGCTGTGAGGAGACCGGCGAGATGGTTGGATCGTCGAAATCTGCAAGAGAGAGAGAGGCGTCGTGCGGGAGAGAAAGCGGAGAGAGACGACGATTCAGATTGGCTCGGCTACCGAAGTCGAAGAAACGATGACGTGAACAGCACCGTCGCTTTCCGATGGATCAGCGCTGGGAAACGCCATGAATCCTCCGCCTCCGCCTCTGGATCAGCGCCCAAAAACGCCGCAGCCAGTACTAGCAAATGGGGGCTTAAAGTGCAAAATGAGGTATTAGGTTACTGGATTACTTGGGGTGGGGAGATTACTGATTCAAGAACAGGTGGTCGTCAAACATCGACTCAAATGGAGAATGGTCATTTTCCTCATGAAGGCTACGGCAAAGCGAGCTATTTTGGCACCCTTCAGTACGCAGACAACGATAAAAACTTCAAAGATGTTCCTGTTGAAAGTCTTGAAACATATGCCACAAAGCCTAGATGCTACAATGTAGTCCTTATGAATAGAATTTCAATCTATGAAACCCATTTCTATTTTGGAGGTCCTGGGTATTCACCAAGCTGTCCTAATTAG

Protein Analysis

326

Amino Acids

36.23

Weight (kDa)

9.28

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Neprosin PF03080 230 - 318 7.6e-18 Neprosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 806
AciI CCGC 5 cut(s) 479, 491, 603, 609, 636
AclWI GGATC 4 cut(s) 299, 450, 581, 625
AcsI RAATTY 1 cut(s) 915
AcuI CTGAAG 1 cut(s) 797
AcyI GRCGYC 1 cut(s) 472
AfaI GTAC 3 cut(s) 88, 646, 818
AfeI AGCGCT 1 cut(s) 580
AfiI CCNNNNNNNGG 2 cut(s) 169, 779
AgsI TTSAA 7 cut(s) 11, 273, 723, 841, 857, 866, 921
AjiI CACGTC 1 cut(s) 547
AjnI CCWGG 2 cut(s) 214, 952
AluBI AGCT 5 cut(s) 83, 191, 221, 798, 969
AluI AGCT 5 cut(s) 83, 191, 221, 798, 969
Alw26I GTCTC 2 cut(s) 418, 492
AlwI GGATC 4 cut(s) 299, 450, 581, 625
AlwNI CAGNNNCTG 1 cut(s) 221
Aor51HI AGCGCT 1 cut(s) 580
AoxI GGCC 2 cut(s) 321, 401
ApeKI GCWGC 4 cut(s) 188, 352, 413, 638
ApoI RAATTY 1 cut(s) 915
AspLEI GCGC 2 cut(s) 581, 625
AspS9I GGNCC 3 cut(s) 321, 402, 950
AsuHPI GGTGA 2 cut(s) 248, 954
AvaII GGWCC 1 cut(s) 950
BaeI ACNNNNGTAYC 2 cut(s) 78, 111
BanI GGYRCC 1 cut(s) 806
BarI GAAGNNNNNNTAC 2 cut(s) 89, 121
BauI CACGAG 1 cut(s) 315
BbsI GAAGAC 1 cut(s) 104
BbvI GCAGC 4 cut(s) 200, 364, 400, 650
BccI CCATC 4 cut(s) 260, 332, 429, 564
BceAI ACGGC 2 cut(s) 147, 802
BcgI CGANNNNNNTGC 2 cut(s) 370, 404
BciT130I CCWGG 2 cut(s) 216, 954
BcoDI GTCTC 2 cut(s) 418, 492
BfaI CTAG 4 cut(s) 69, 180, 648, 885
BfoI RGCGCY 2 cut(s) 582, 626
BglII AGATCT 1 cut(s) 126
BisI GCNGC 5 cut(s) 189, 353, 414, 636, 639
BlsI GCNGC 5 cut(s) 190, 354, 415, 637, 640
BmcAI AGTACT 1 cut(s) 646
Bme1390I CCNGG 2 cut(s) 216, 954
Bme18I GGWCC 1 cut(s) 950
BmgBI CACGTC 1 cut(s) 547
BmgT120I GGNCC 3 cut(s) 321, 402, 950
BmiI GGNNCC 3 cut(s) 161, 322, 808
BmrFI CCNGG 2 cut(s) 216, 954
BmsI GCATC 2 cut(s) 364, 878
BpiI GAAGAC 1 cut(s) 104
BpuEI CTTGAG 2 cut(s) 269, 344
BsaHI GRCGYC 1 cut(s) 472
BsaI GGTCTC 1 cut(s) 418
BsaJI CCNNGG 3 cut(s) 113, 405, 953
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 779
Bse118I RCCGGY 1 cut(s) 427
Bse1I ACTGG 2 cut(s) 642, 695
BseBI CCWGG 2 cut(s) 216, 954
BseDI CCNNGG 3 cut(s) 113, 405, 953
BseLI CCNNNNNNNGG 2 cut(s) 169, 779
BseMII CTCAG 2 cut(s) 114, 183
BseNI ACTGG 2 cut(s) 642, 695
BseRI GAGGAG 2 cut(s) 198, 436
BseXI GCAGC 4 cut(s) 200, 364, 400, 650
BseYI CCCAGC 2 cut(s) 200, 581
BshFI GGCC 2 cut(s) 323, 403
BshNI GGYRCC 1 cut(s) 806
BsiSI CCGG 1 cut(s) 428
BslI CCNNNNNNNGG 2 cut(s) 169, 779
BsmAI GTCTC 2 cut(s) 418, 492
BsmBI CGTCTC 1 cut(s) 492
BsmI GAATGC 1 cut(s) 230
BsnI GGCC 2 cut(s) 323, 403
Bso31I GGTCTC 1 cut(s) 418
Bsp143I GATC 5 cut(s) 126, 304, 442, 573, 617
BspACI CCGC 5 cut(s) 479, 491, 603, 609, 636
BspANI GGCC 2 cut(s) 323, 403
BspCNI CTCAG 2 cut(s) 115, 184
BspHI TCATGA 1 cut(s) 775
BspLI GGNNCC 3 cut(s) 161, 322, 808
BspPI GGATC 4 cut(s) 299, 450, 581, 625
BspT107I GGYRCC 1 cut(s) 806
BspTNI GGTCTC 1 cut(s) 418
BsrFI RCCGGY 1 cut(s) 427
BsrI ACTGG 2 cut(s) 642, 695
BssAI RCCGGY 1 cut(s) 427
BssECI CCNNGG 3 cut(s) 113, 405, 953
BssMI GATC 5 cut(s) 126, 304, 442, 573, 617
BssNI GRCGYC 1 cut(s) 472
BssSI CACGAG 1 cut(s) 315
BssT1I CCWWGG 1 cut(s) 113
Bst2BI CACGAG 1 cut(s) 315
Bst2UI CCWGG 2 cut(s) 216, 954
Bst4CI ACNGT 1 cut(s) 559
Bst6I CTCTTC 1 cut(s) 44
BstACI GRCGYC 1 cut(s) 472
BstC8I GCNNGC 3 cut(s) 120, 401, 796
BstDEI CTNAG 2 cut(s) 123, 192
BstENI CCTNNNNNAGG 1 cut(s) 777
BstH2I RGCGCY 2 cut(s) 582, 626
BstHHI GCGC 2 cut(s) 581, 625
BstKTI GATC 5 cut(s) 129, 307, 445, 576, 620
BstMAI GTCTC 2 cut(s) 418, 492
BstMBI GATC 5 cut(s) 126, 304, 442, 573, 617
BstMWI GCNNNNNNNGC 8 cut(s) 159, 185, 197, 293, 349, 667, 795, 804
BstNI CCWGG 2 cut(s) 216, 954
BstSCI CCNGG 2 cut(s) 214, 952
BstV1I GCAGC 4 cut(s) 200, 364, 400, 650
BstV2I GAAGAC 1 cut(s) 104
BstX2I RGATCY 1 cut(s) 126
BstYI RGATCY 1 cut(s) 126
BsuRI GGCC 2 cut(s) 323, 403
BtrI CACGTC 1 cut(s) 547
Cac8I GCNNGC 3 cut(s) 120, 401, 796
CaiI CAGNNNCTG 1 cut(s) 221
CciI TCATGA 1 cut(s) 775
CfoI GCGC 2 cut(s) 581, 625
Cfr10I RCCGGY 1 cut(s) 427
Cfr13I GGNCC 3 cut(s) 321, 402, 950
CseI GACGC 1 cut(s) 461
Csp6I GTAC 3 cut(s) 87, 645, 817
CviAII CATG 2 cut(s) 593, 776
CviQI GTAC 3 cut(s) 87, 645, 817
DdeI CTNAG 2 cut(s) 123, 192
DpnI GATC 5 cut(s) 128, 306, 444, 575, 619
DpnII GATC 5 cut(s) 126, 304, 442, 573, 617
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
EciI GGCGGA 2 cut(s) 592, 598
Eco130I CCWWGG 1 cut(s) 113
Eco31I GGTCTC 1 cut(s) 418
Eco47I GGWCC 1 cut(s) 950
Eco47III AGCGCT 1 cut(s) 580
Eco57I CTGAAG 1 cut(s) 797
EcoNI CCTNNNNNAGG 1 cut(s) 777
EcoO109I RGGNCCY 2 cut(s) 402, 950
EcoRII CCWGG 2 cut(s) 214, 952
EcoT14I CCWWGG 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 113
Esp3I CGTCTC 1 cut(s) 492
FaeI CATG 2 cut(s) 596, 779
FaiI YATR 9 cut(s) 48, 300, 336, 594, 777, 871, 873, 908, 927
FatI CATG 2 cut(s) 592, 775
FauI CCCGC 1 cut(s) 472
FauNDI CATATG 1 cut(s) 871
Fnu4HI GCNGC 5 cut(s) 189, 353, 414, 636, 639
Fsp4HI GCNGC 5 cut(s) 189, 353, 414, 636, 639
FspBI CTAG 4 cut(s) 69, 180, 648, 885
GlaI GCGC 2 cut(s) 580, 624
GluI GCNGC 5 cut(s) 189, 353, 414, 636, 639
GsaI CCCAGC 2 cut(s) 204, 585
HaeII RGCGCY 2 cut(s) 582, 626
HaeIII GGCC 2 cut(s) 323, 403
HapII CCGG 1 cut(s) 428
HgaI GACGC 1 cut(s) 461
HhaI GCGC 2 cut(s) 581, 625
Hin1I GRCGYC 1 cut(s) 472
Hin1II CATG 2 cut(s) 596, 779
Hin6I GCGC 2 cut(s) 579, 623
HinP1I GCGC 2 cut(s) 579, 623
HinfI GANTC 5 cut(s) 173, 506, 596, 719, 748
HpaII CCGG 1 cut(s) 428
HphI GGTGA 2 cut(s) 248, 954
Hpy166II GTNNAC 1 cut(s) 550
Hpy188I TCNGA 2 cut(s) 511, 569
Hpy188III TCNNGA 6 cut(s) 248, 361, 615, 723, 776, 863
Hpy8I GTNNAC 1 cut(s) 550
Hpy99I CGWCG 6 cut(s) 374, 377, 450, 477, 506, 563
HpyAV CCTTC 2 cut(s) 773, 821
HpyCH4III ACNGT 1 cut(s) 559
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 7 cut(s) 228, 263, 343, 381, 399, 457, 670
HpyF10VI GCNNNNNNNGC 8 cut(s) 159, 185, 197, 293, 349, 667, 795, 804
HpyF3I CTNAG 2 cut(s) 123, 192
HpySE526I ACGT 1 cut(s) 546
Hsp92I GRCGYC 1 cut(s) 472
Hsp92II CATG 2 cut(s) 596, 779
HspAI GCGC 2 cut(s) 579, 623
Kzo9I GATC 5 cut(s) 126, 304, 442, 573, 617
LmnI GCTCC 4 cut(s) 80, 159, 185, 218
Lsp1109I GCAGC 4 cut(s) 200, 364, 400, 650
LweI GCATC 2 cut(s) 364, 878
MaeI CTAG 4 cut(s) 69, 180, 648, 885
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 1 cut(s) 686
MalI GATC 5 cut(s) 128, 306, 444, 575, 619
MboI GATC 5 cut(s) 126, 304, 442, 573, 617
MboII GAAGA 3 cut(s) 31, 109, 546
MflI RGATCY 1 cut(s) 126
MluCI AATT 3 cut(s) 255, 915, 976
MlyI GAGTC 1 cut(s) 742
MmeI TCCRAC 1 cut(s) 420
MseI TTAA 2 cut(s) 147, 663
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 1 cut(s) 428
MspR9I CCNGG 2 cut(s) 216, 954
Mva1269I GAATGC 1 cut(s) 230
MvaI CCWGG 2 cut(s) 216, 954
MwoI GCNNNNNNNGC 8 cut(s) 159, 185, 197, 293, 349, 667, 795, 804
NdeI CATATG 1 cut(s) 871
NdeII GATC 5 cut(s) 126, 304, 442, 573, 617
NlaIII CATG 2 cut(s) 596, 779
NlaIV GGNNCC 3 cut(s) 161, 322, 808
NmeAIII GCCGAG 1 cut(s) 498
PagI TCATGA 1 cut(s) 775
PcsI WCGNNNNNNNCGW 1 cut(s) 825
PctI GAATGC 1 cut(s) 230
PfeI GAWTC 4 cut(s) 173, 506, 596, 719
PfoI TCCNGGA 1 cut(s) 214
PkrI GCNGC 5 cut(s) 190, 354, 415, 637, 640
PleI GAGTC 1 cut(s) 742
PpsI GAGTC 1 cut(s) 742
PpuMI RGGWCCY 1 cut(s) 950
Psp5II RGGWCCY 1 cut(s) 950
Psp6I CCWGG 2 cut(s) 214, 952
PspFI CCCAGC 2 cut(s) 200, 581
PspGI CCWGG 2 cut(s) 214, 952
PspN4I GGNNCC 3 cut(s) 161, 322, 808
PspPI GGNCC 3 cut(s) 321, 402, 950
PspPPI RGGWCCY 1 cut(s) 950
PstNI CAGNNNCTG 1 cut(s) 221
PsuI RGATCY 1 cut(s) 126
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 3 cut(s) 88, 646, 818
RsaNI GTAC 3 cut(s) 87, 645, 817
SaqAI TTAA 2 cut(s) 147, 663
SatI GCNGC 5 cut(s) 189, 353, 414, 636, 639
Sau3AI GATC 5 cut(s) 126, 304, 442, 573, 617
Sau96I GGNCC 3 cut(s) 321, 402, 950
ScaI AGTACT 1 cut(s) 646
SchI GAGTC 1 cut(s) 742
ScrFI CCNGG 2 cut(s) 216, 954
SfaNI GCATC 2 cut(s) 364, 878
SinI GGWCC 1 cut(s) 950
SmlI CTYRAG 2 cut(s) 248, 359
SmoI CTYRAG 2 cut(s) 248, 359
Sse9I AATT 3 cut(s) 255, 915, 976
SsiI CCGC 5 cut(s) 479, 491, 603, 609, 636
SspMI CTAG 4 cut(s) 69, 180, 648, 885
StyD4I CCNGG 2 cut(s) 214, 952
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 559
TaiI ACGT 1 cut(s) 549
TaqI TCGA 3 cut(s) 448, 532, 746
TasI AATT 3 cut(s) 255, 915, 976
TatI WGTACW 1 cut(s) 644
TauI GCSGC 1 cut(s) 638
TfiI GAWTC 4 cut(s) 173, 506, 596, 719
Tru1I TTAA 2 cut(s) 147, 663
Tru9I TTAA 2 cut(s) 147, 663
TseI GCWGC 4 cut(s) 188, 352, 413, 638
TspDTI ATGAA 4 cut(s) 609, 792, 923, 942
VpaK11BI GGWCC 1 cut(s) 950
XagI CCTNNNNNAGG 1 cut(s) 777
XapI RAATTY 1 cut(s) 915
XcmI CCANNNNNNNNNTGG 1 cut(s) 941
XspI CTAG 4 cut(s) 69, 180, 648, 885
ZrmI AGTACT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.