Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004413

Physical Location & Seq

Genomic Coordinates Reverse (-)

61251587 .. 61263204

Gene Structure 11618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG431900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGAATTCGAACTGTAGAGAGGCTCAATCAGTCTCTTCCAGCAGCCCGATGACCAATTCAAACTGTGGAGACGCTCGATCATTCTATCCCGGCGGCACCACGTATTGGGTGTTTCTCCTCACTTGTCGACTATGGGGATGGAGGTTTCCAAGGCAACGACTCTACTACTTGGGCTCCTTATCTAAGGATGGTGATGCTCAACATGGTGGCTATTTAGGCTATGCTGGTGATGGCTTGAAGGAAGTTGGTAGGGGCGACCTATCTTCTGGCGATGACAACATACAACTTGGTAGCGGATACGTTGTGGAGCAAAGAATTAAAACCGTGGAGAACAATAATCCAATCATCAAAAGCATAAAGGGCGATGAAGGTGATGTGATAGATTGCATTGACATCTATAAGCAGCCTGCTCTTAGTCATCCACTTCTCAAAAATCATACTATACAGCTGAATCCGCCAAGTCCGTATCCAAGTGGACTTAATGAAACAGAAAGTTCTCATCAAGATGACGAGCAAGTACTGAAATCTTGGTTATTGAATGAAGAGTGCCCAGAAGGAACAATCCCCATTCTTCGAACTCAGGCTTTTAATAGTTCTTTTCCTAAATCTAGCCCACCTTTCAATGGAAGCAACGTTGAGTTCACGCCTGCATCTGGTCATGAGTACGCCGTAGCTAGTCTTTCAGGTGGCCAATATTACGGAGCACACGCATCTGTGAACGTATGGAGCCCTTTATCAGTTTTTGAGGAGAATAGTATATCCCAGATATGGGTAGCGGGAGGTCATGAACAAGCACGAAGTACTGTTGAGGCTGGGTGGAAAATTAATTCGGCTGACCAGCAAACAAGGTTCTTCATATTCTGGACAGGCCATGGTTACCAAGATGGTTGCTACAATCTTCAATGTCCTGGTTTCGTCCAAGTAAACAGAAAGTTTGCCCTAGGTTTACCCATTAAACCTGTTTCAATCTACAACGGCAAACAATTTGAAATATTCATAAGTATATACAAGCACCAATCGACTGGACAGTGGTGGGTAATGTTGCAAGATCAAGCATTAGGATACTGGCCAGACAAAATCTTACCAAGTCTGAGAGGCAGTGCTGACGCGGTTAGCTGGGGTGGTGAAATTTACAATTCAGAAATTGGAGGTCGTCACACATCAACTCAGATGGGGAGTGGTCATTTCCCGAGTGAAGGCTATGGCAAAGCAAGCTATTTTCGAAATATTCAGTACTTGGCCAACTCTGGAAAGTTTGTAGATGCACAAGGGCTTATACCCTATGTCACAAAGCCTCCATGCTACAACCTTATTATGAAAAATAAAGCCCCAGGATTTGGAAACCATTTCTATTATGGGGGATTTGGATATTCAGAAAGATGCCCTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

463

Amino Acids

51.3

Weight (kDa)

6.31

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Neprosin_AP	PF14365	118 - 195	8.9e-23	Neprosin activation peptide
Neprosin	PF03080	250 - 454	2.7e-69	Neprosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17750 AT2G44220 AT2G44240
fragaria_vesca	FvH4_6g32790
malus_domestica	MD09G1198100.v1.1
prunus_persica	Prupe.3G054100_v2.0.a1 Prupe.3G054200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0141911 RchiOBHm_Chr2g0141931 RchiOBHm_Chr2g0141971
rosa_laevigata	RLG00000019942
rosa_multiflora	Rmu_co8265735.1_g000001 Rmu_co8330971.1_g000001 Rmu_sc0001287.1_g000036 Rmu_sc0004757.1_g000021 Rmu_sc0009946.1_g000003 Rmu_sc0009946.1_g000009
rosa_roxburghii	Rroxscaffold_2G00103690 Rroxscaffold_2G00103720
rosa_rugosa	Rorug02G0369200 Rorug02G0369300 Rorug02G0369400
rosa_samantha	Rh2AG421400 Rh2AG421600 Rh2AG421700 Rh2AG422100 Rh2BG431900 Rh2CG408700 Rh2CG408900 Rh2DG441900
rosa_wichuraiana	Rw2G034570 Rw2G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	95
AccB7I	CCANNNNNTGG	2 cut(s)	105, 1337
AccI	GTMKAC	1 cut(s)	127
AccII	CGCG	1 cut(s)	1109
AciI	CCGC	5 cut(s)	93, 294, 455, 776, 1109
AclI	AACGTT	1 cut(s)	633
AcoI	YGGCCR	3 cut(s)	688, 1067, 1239
AcsI	RAATTY	2 cut(s)	4, 1128
AfaI	GTAC	4 cut(s)	519, 665, 802, 1235
AfiI	CCNNNNNNNGG	7 cut(s)	105, 623, 653, 768, 769, 1196, 1337
AgsI	TTSAA	7 cut(s)	60, 238, 538, 622, 902, 966, 989
AjnI	CCWGG	2 cut(s)	907, 1330
AluBI	AGCT	4 cut(s)	448, 674, 1116, 1215
AluI	AGCT	4 cut(s)	448, 674, 1116, 1215
Alw21I	GWGCWC	1 cut(s)	706
Alw26I	GTCTC	2 cut(s)	37, 63
Ama87I	CYCGRG	1 cut(s)	1189
AoxI	GGCC	4 cut(s)	688, 868, 1067, 1239
ApeKI	GCWGC	2 cut(s)	42, 403
ApoI	RAATTY	2 cut(s)	4, 1128
AseI	ATTAAT	1 cut(s)	825
AspA2I	CCTAGG	1 cut(s)	940
AsuC2I	CCSGG	1 cut(s)	90
AsuHPI	GGTGA	4 cut(s)	203, 239, 383, 1136
AsuII	TTCGAA	3 cut(s)	8, 574, 1222
AvaI	CYCGRG	1 cut(s)	1189
AvrII	CCTAGG	1 cut(s)	940
BaeGI	GKGCMC	1 cut(s)	551
BalI	TGGCCA	3 cut(s)	690, 1069, 1241
BanI	GGYRCC	1 cut(s)	95
BanII	GRGCYC	2 cut(s)	176, 731
Bbv12I	GWGCWC	1 cut(s)	706
BbvI	GCAGC	2 cut(s)	54, 415
BccI	CCATC	5 cut(s)	132, 182, 224, 878, 1165
BceAI	ACGGC	2 cut(s)	653, 991
BciT130I	CCWGG	2 cut(s)	909, 1332
BciVI	GTATCC	3 cut(s)	290, 477, 1055
BcnI	CCSGG	1 cut(s)	90
BcoDI	GTCTC	2 cut(s)	37, 63
BfaI	CTAG	3 cut(s)	609, 675, 941
BfmI	CTRYAG	1 cut(s)	13
BfuI	GTATCC	3 cut(s)	290, 477, 1055
BisI	GCNGC	3 cut(s)	43, 94, 404
BlnI	CCTAGG	1 cut(s)	940
BlsI	GCNGC	3 cut(s)	44, 95, 405
BmcAI	AGTACT	3 cut(s)	519, 802, 1235
Bme1390I	CCNGG	3 cut(s)	90, 909, 1332
BmeT110I	CYCGRG	1 cut(s)	1189
BmiI	GGNNCC	3 cut(s)	97, 175, 728
BmrFI	CCNGG	3 cut(s)	90, 909, 1332
BmsI	GCATC	5 cut(s)	184, 659, 719, 1252, 1370
Bpu14I	TTCGAA	3 cut(s)	8, 574, 1222
BpuMI	CCSGG	1 cut(s)	90
BsaAI	YACGTR	1 cut(s)	102
BsaJI	CCNNGG	5 cut(s)	149, 324, 871, 940, 1330
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 188, 1279, 1309
Bsc4I	CCNNNNNNNGG	7 cut(s)	105, 623, 653, 768, 769, 1196, 1337
Bse1I	ACTGG	2 cut(s)	1027, 1070
BseBI	CCWGG	2 cut(s)	909, 1332
BseDI	CCNNGG	5 cut(s)	149, 324, 871, 940, 1330
BseGI	GGATG	3 cut(s)	143, 193, 418
BseLI	CCNNNNNNNGG	7 cut(s)	105, 623, 653, 768, 769, 1196, 1337
BseMII	CTCAG	3 cut(s)	593, 1082, 1181
BseNI	ACTGG	2 cut(s)	1027, 1070
BseRI	GAGGAG	2 cut(s)	107, 761
BseSI	GKGCMC	1 cut(s)	551
BseXI	GCAGC	2 cut(s)	54, 415
BseYI	CCCAGC	2 cut(s)	812, 1116
Bsh1236I	CGCG	1 cut(s)	1109
BshFI	GGCC	4 cut(s)	690, 870, 1069, 1241
BshNI	GGYRCC	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	706
BsiHKCI	CYCGRG	1 cut(s)	1189
BsiSI	CCGG	1 cut(s)	90
BslI	CCNNNNNNNGG	7 cut(s)	105, 623, 653, 768, 769, 1196, 1337
BsmAI	GTCTC	2 cut(s)	37, 63
BsmBI	CGTCTC	1 cut(s)	63
BsnI	GGCC	4 cut(s)	690, 870, 1069, 1241
BsoBI	CYCGRG	1 cut(s)	1189
Bsp119I	TTCGAA	3 cut(s)	8, 574, 1222
Bsp1286I	GDGCHC	4 cut(s)	176, 551, 706, 731
Bsp143I	GATC	2 cut(s)	77, 1048
Bsp19I	CCATGG	1 cut(s)	871
BspACI	CCGC	5 cut(s)	93, 294, 455, 776, 1109
BspANI	GGCC	4 cut(s)	690, 870, 1069, 1241
BspCNI	CTCAG	3 cut(s)	592, 1083, 1180
BspFNI	CGCG	1 cut(s)	1109
BspHI	TCATGA	2 cut(s)	658, 784
BspLI	GGNNCC	3 cut(s)	97, 175, 728
BspT104I	TTCGAA	3 cut(s)	8, 574, 1222
BspT107I	GGYRCC	1 cut(s)	95
BsrI	ACTGG	2 cut(s)	1027, 1070
BssECI	CCNNGG	5 cut(s)	149, 324, 871, 940, 1330
BssMI	GATC	2 cut(s)	77, 1048
BssT1I	CCWWGG	3 cut(s)	149, 871, 940
Bst2UI	CCWGG	2 cut(s)	909, 1332
Bst4CI	ACNGT	5 cut(s)	14, 65, 325, 805, 1029
Bst6I	CTCTTC	2 cut(s)	40, 537
BstBAI	YACGTR	1 cut(s)	102
BstBI	TTCGAA	3 cut(s)	8, 574, 1222
BstC8I	GCNNGC	3 cut(s)	408, 648, 1213
BstDEI	CTNAG	5 cut(s)	183, 413, 579, 1091, 1167
BstDSI	CCRYGG	2 cut(s)	324, 871
BstEII	GGTNACC	1 cut(s)	875
BstF5I	GGATG	3 cut(s)	143, 193, 418
BstFNI	CGCG	1 cut(s)	1109
BstKTI	GATC	2 cut(s)	80, 1051
BstMAI	GTCTC	2 cut(s)	37, 63
BstMBI	GATC	2 cut(s)	77, 1048
BstMWI	GCNNNNNNNGC	4 cut(s)	216, 360, 454, 1212
BstNI	CCWGG	2 cut(s)	909, 1332
BstPI	GGTNACC	1 cut(s)	875
BstSCI	CCNGG	3 cut(s)	88, 907, 1330
BstSFI	CTRYAG	1 cut(s)	13
BstSLI	GKGCMC	1 cut(s)	551
BstUI	CGCG	1 cut(s)	1109
BstV1I	GCAGC	2 cut(s)	54, 415
BstXI	CCANNNNNNTGG	1 cut(s)	1022
BsuI	GTATCC	3 cut(s)	290, 477, 1055
BsuRI	GGCC	4 cut(s)	690, 870, 1069, 1241
BtgI	CCRYGG	2 cut(s)	324, 871
BtgZI	GCGATG	2 cut(s)	285, 378
BtsCI	GGATG	3 cut(s)	143, 193, 418
BtsI	GCAGTG	1 cut(s)	1105
BtsIMutI	CAGTG	2 cut(s)	1034, 1105
Cac8I	GCNNGC	3 cut(s)	408, 648, 1213
CciI	TCATGA	2 cut(s)	658, 784
CseI	GACGC	2 cut(s)	80, 1115
Csp6I	GTAC	4 cut(s)	518, 664, 801, 1234
CviAII	CATG	5 cut(s)	203, 659, 785, 872, 1299
CviQI	GTAC	4 cut(s)	518, 664, 801, 1234
DdeI	CTNAG	5 cut(s)	183, 413, 579, 1091, 1167
DpnI	GATC	2 cut(s)	79, 1050
DpnII	GATC	2 cut(s)	77, 1048
EaeI	YGGCCR	3 cut(s)	688, 1067, 1239
Eam1104I	CTCTTC	2 cut(s)	40, 537
EarI	CTCTTC	2 cut(s)	40, 537
EciI	GGCGGA	1 cut(s)	444
Eco130I	CCWWGG	3 cut(s)	149, 871, 940
Eco24I	GRGCYC	2 cut(s)	176, 731
Eco88I	CYCGRG	1 cut(s)	1189
Eco91I	GGTNACC	1 cut(s)	875
EcoO65I	GGTNACC	1 cut(s)	875
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	2 cut(s)	907, 1330
EcoT14I	CCWWGG	3 cut(s)	149, 871, 940
EcoT38I	GRGCYC	2 cut(s)	176, 731
ErhI	CCWWGG	3 cut(s)	149, 871, 940
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	5 cut(s)	206, 662, 788, 875, 1302
FatI	CATG	5 cut(s)	202, 658, 784, 871, 1298
FauI	CCCGC	1 cut(s)	769
FblI	GTMKAC	1 cut(s)	127
Fnu4HI	GCNGC	3 cut(s)	43, 94, 404
FokI	GGATG	3 cut(s)	150, 200, 405
FriOI	GRGCYC	2 cut(s)	176, 731
Fsp4HI	GCNGC	3 cut(s)	43, 94, 404
FspBI	CTAG	3 cut(s)	609, 675, 941
GluI	GCNGC	3 cut(s)	43, 94, 404
GsaI	CCCAGC	2 cut(s)	816, 1120
HaeIII	GGCC	4 cut(s)	690, 870, 1069, 1241
HapII	CCGG	1 cut(s)	90
HgaI	GACGC	2 cut(s)	80, 1115
Hin1II	CATG	5 cut(s)	206, 662, 788, 875, 1302
HincII	GTYRAC	1 cut(s)	128
HindII	GTYRAC	1 cut(s)	128
HinfI	GANTC	2 cut(s)	159, 451
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	4 cut(s)	203, 239, 383, 1136
Hpy166II	GTNNAC	6 cut(s)	128, 476, 642, 718, 925, 947
Hpy188I	TCNGA	4 cut(s)	1092, 1141, 1170, 1375
Hpy188III	TCNNGA	6 cut(s)	503, 659, 785, 862, 1189, 1248
Hpy8I	GTNNAC	6 cut(s)	128, 476, 642, 718, 925, 947
HpyAV	CCTTC	4 cut(s)	232, 362, 548, 1190
HpyCH4III	ACNGT	5 cut(s)	14, 65, 325, 805, 1029
HpyCH4IV	ACGT	4 cut(s)	101, 300, 633, 720
HpyCH4V	TGCA	4 cut(s)	387, 650, 1045, 1265
HpyF10VI	GCNNNNNNNGC	4 cut(s)	216, 360, 454, 1212
HpyF3I	CTNAG	5 cut(s)	183, 413, 579, 1091, 1167
HpySE526I	ACGT	4 cut(s)	101, 300, 633, 720
Hsp92II	CATG	5 cut(s)	206, 662, 788, 875, 1302
Kzo9I	GATC	2 cut(s)	77, 1048
LmnI	GCTCC	4 cut(s)	179, 307, 701, 726
Lsp1109I	GCAGC	2 cut(s)	54, 415
LweI	GCATC	5 cut(s)	184, 659, 719, 1252, 1370
MaeI	CTAG	3 cut(s)	609, 675, 941
MaeII	ACGT	4 cut(s)	101, 300, 633, 720
MaeIII	GTNAC	3 cut(s)	875, 1154, 1285
MalI	GATC	2 cut(s)	79, 1050
MboI	GATC	2 cut(s)	77, 1048
MboII	GAAGA	6 cut(s)	27, 255, 554, 563, 844, 890
MhlI	GDGCHC	4 cut(s)	176, 551, 706, 731
MlsI	TGGCCA	3 cut(s)	690, 1069, 1241
MluCI	AATT	9 cut(s)	4, 55, 315, 822, 826, 983, 1128, 1135, 1143
MluNI	TGGCCA	3 cut(s)	690, 1069, 1241
MlyI	GAGTC	1 cut(s)	153
MnlI	CCTC	9 cut(s)	13, 128, 135, 739, 773, 802, 1088, 1142, 1305
Mox20I	TGGCCA	3 cut(s)	690, 1069, 1241
MscI	TGGCCA	3 cut(s)	690, 1069, 1241
MseI	TTAA	5 cut(s)	318, 480, 588, 825, 954
MslI	CAYNNNNRTG	1 cut(s)	504
Msp20I	TGGCCA	3 cut(s)	690, 1069, 1241
MspA1I	CMGCKG	1 cut(s)	448
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	3 cut(s)	90, 909, 1332
MvaI	CCWGG	2 cut(s)	909, 1332
MvnI	CGCG	1 cut(s)	1109
MwoI	GCNNNNNNNGC	4 cut(s)	216, 360, 454, 1212
NciI	CCSGG	1 cut(s)	90
NcoI	CCATGG	1 cut(s)	871
NdeII	GATC	2 cut(s)	77, 1048
NlaIII	CATG	5 cut(s)	206, 662, 788, 875, 1302
NlaIV	GGNNCC	3 cut(s)	97, 175, 728
NmuCI	GTSAC	2 cut(s)	1154, 1285
NspV	TTCGAA	3 cut(s)	8, 574, 1222
PagI	TCATGA	2 cut(s)	658, 784
PfeI	GAWTC	1 cut(s)	451
PflMI	CCANNNNNTGG	2 cut(s)	105, 1337
PkrI	GCNGC	3 cut(s)	44, 95, 405
PleI	GAGTC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	153
Ppu21I	YACGTR	1 cut(s)	102
PshBI	ATTAAT	1 cut(s)	825
Psp1406I	AACGTT	1 cut(s)	633
Psp6I	CCWGG	2 cut(s)	907, 1330
PspEI	GGTNACC	1 cut(s)	875
PspFI	CCCAGC	2 cut(s)	812, 1116
PspGI	CCWGG	2 cut(s)	907, 1330
PspN4I	GGNNCC	3 cut(s)	97, 175, 728
PvuII	CAGCTG	1 cut(s)	448
RsaI	GTAC	4 cut(s)	519, 665, 802, 1235
RsaNI	GTAC	4 cut(s)	518, 664, 801, 1234
RseI	CAYNNNNRTG	1 cut(s)	504
SalI	GTCGAC	1 cut(s)	126
SaqAI	TTAA	5 cut(s)	318, 480, 588, 825, 954
SatI	GCNGC	3 cut(s)	43, 94, 404
Sau3AI	GATC	2 cut(s)	77, 1048
ScaI	AGTACT	3 cut(s)	519, 802, 1235
SchI	GAGTC	1 cut(s)	153
ScrFI	CCNGG	3 cut(s)	90, 909, 1332
SduI	GDGCHC	4 cut(s)	176, 551, 706, 731
SfaNI	GCATC	5 cut(s)	184, 659, 719, 1252, 1370
SfcI	CTRYAG	1 cut(s)	13
SfuI	TTCGAA	3 cut(s)	8, 574, 1222
SmiMI	CAYNNNNRTG	1 cut(s)	504
Sse9I	AATT	9 cut(s)	4, 55, 315, 822, 826, 983, 1128, 1135, 1143
SsiI	CCGC	5 cut(s)	93, 294, 455, 776, 1109
SspI	AATATT	3 cut(s)	695, 993, 1228
SspMI	CTAG	3 cut(s)	609, 675, 941
StyD4I	CCNGG	3 cut(s)	88, 907, 1330
StyI	CCWWGG	3 cut(s)	149, 871, 940
TaaI	ACNGT	5 cut(s)	14, 65, 325, 805, 1029
TaiI	ACGT	4 cut(s)	104, 303, 636, 723
TaqI	TCGA	6 cut(s)	8, 76, 127, 574, 1019, 1222
TasI	AATT	9 cut(s)	4, 55, 315, 822, 826, 983, 1128, 1135, 1143
TatI	WGTACW	3 cut(s)	517, 800, 1233
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	451
Tru1I	TTAA	5 cut(s)	318, 480, 588, 825, 954
Tru9I	TTAA	5 cut(s)	318, 480, 588, 825, 954
TscAI	CASTG	2 cut(s)	1034, 1105
TseFI	GTSAC	2 cut(s)	1154, 1285
TseI	GCWGC	2 cut(s)	42, 403
Tsp45I	GTSAC	2 cut(s)	1154, 1285
TspDTI	ATGAA	8 cut(s)	17, 381, 498, 555, 801, 844, 985, 1331
TspGWI	ACGGA	2 cut(s)	453, 714
TspRI	CASTG	2 cut(s)	1034, 1105
Van91I	CCANNNNNTGG	2 cut(s)	105, 1337
VspI	ATTAAT	1 cut(s)	825
XapI	RAATTY	2 cut(s)	4, 1128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1352
XmaJI	CCTAGG	1 cut(s)	940
XmiI	GTMKAC	1 cut(s)	127
XspI	CTAG	3 cut(s)	609, 675, 941
ZrmI	AGTACT	3 cut(s)	519, 802, 1235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.