Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004413

Physical Location & Seq

Genomic Coordinates Forward (+)

3806200 .. 3808683

Gene Structure 2484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G054200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCAAATGGGATTCGTTACACCAAAGTCGAAGGCTGCATTTTTCTTGTAGCAATAGCAAGTTTCATGTTGAGCAACGGATTTGTCGATTGCAGAAAAGTTGAAACAGTGAAAACTGATCAAGCGTCTGTGAAGCACAACAAATCAGTCCTCAAAACTATTAAGGGAGAGGGCGATGATTTGATAGATTGTGTTGATATCTATAAACAACCAGCTCGTAATCACCCTCTTCTCAAGAATCACACTATACAGTTGAAACCGAGTGAAATTGAAACTGTAAGTGGTGTTGAAGATGGGGTCTTTCAATCTTGGCGTCAGAATGGAGAGTGCCCTGACGGAACAATCCCCATTGCACGAACAAAGGCATTTGAGCATCGTACATCTAAACCAATGCCACATTATGACTCCAACAAATTTGTGTTCGTCCCTCCTCCTAATCATGAGTTTGCCCAAGTGAGTCTGCACGGTGGTCAATACTACGGAGCAAAAGCAGAATTTAACGTATGGAACCCTGCCGCATATAATAAAGATAACAGTCTAGCCCGGGTATGGGTTGGGAGAGGCAGCGGAAAAGCACTGAGCAGTGTAGAAGCTGGCTGGATTCGTGGTGATGGTGGCCAATCTGGTTGCTACAATCTTGAATGTCCTGGTTTCGTCCAAGTAAGCAAAAAATTTACCCTTGGCGGTCCCATGTCACCTGTTTCTAGCTACAATGGGGCACAGTATGATATATTCCTAAGCATATACAAGAACACAGATAGTGGACATTGGTGGCTTAACGTGGGAAATGAGGCAATAGGATACTGGCCTGACACCATCCTCCCAAGTCTAAGAGGCAGTGCTGAATTGGTTAGTTGGGGAGGGGAGGTTTACGATTCACAAGCTGAGGGTCATCACACATCTACTCAAATGGGGAGTGGTCATTTTCCCGATGAAGGATTTGGGAAAGCCAGTTATGTTCGCAATGTCCAATACATGGACGATTCTTCGCCTCTCACTTTCAAAGATCCTGCCGGTCTTCTAACTTATGCGACAAAACCTTCATGCTACAATTTAATTGTTAAAGATAAAACCCCAAACATGGGAATCCATTTCTATTATGGAGGTCCTGGGTTTTCAGCGGCGTGTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

378

Amino Acids

41.44

Weight (kDa)

6.86

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17750 AT2G44220 AT2G44240
fragaria_vesca	FvH4_6g32790
malus_domestica	MD09G1198100.v1.1
prunus_persica	Prupe.3G054100_v2.0.a1 Prupe.3G054200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0141911 RchiOBHm_Chr2g0141931 RchiOBHm_Chr2g0141971
rosa_laevigata	RLG00000019942
rosa_multiflora	Rmu_co8265735.1_g000001 Rmu_co8330971.1_g000001 Rmu_sc0001287.1_g000036 Rmu_sc0004757.1_g000021 Rmu_sc0009946.1_g000003 Rmu_sc0009946.1_g000009
rosa_roxburghii	Rroxscaffold_2G00103690 Rroxscaffold_2G00103720
rosa_rugosa	Rorug02G0369200 Rorug02G0369300 Rorug02G0369400
rosa_samantha	Rh2AG421400 Rh2AG421600 Rh2AG421700 Rh2AG422100 Rh2BG431900 Rh2CG408700 Rh2CG408900 Rh2DG441900
rosa_wichuraiana	Rw2G034570 Rw2G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	976
AciI	CCGC	4 cut(s)	516, 567, 684, 1121
AclWI	GGATC	1 cut(s)	1001
AcoI	YGGCCR	1 cut(s)	616
AcsI	RAATTY	3 cut(s)	413, 494, 671
AcyI	GRCGYC	1 cut(s)	313
AfaI	GTAC	1 cut(s)	379
AfiI	CCNNNNNNNGG	6 cut(s)	549, 550, 935, 976, 1081, 1082
AgsI	TTSAA	7 cut(s)	104, 256, 272, 290, 305, 641, 1003
AjnI	CCWGG	2 cut(s)	646, 1108
AluBI	AGCT	4 cut(s)	215, 593, 708, 884
AluI	AGCT	4 cut(s)	215, 593, 708, 884
AlwI	GGATC	1 cut(s)	1001
Ama87I	CYCGRG	1 cut(s)	543
AoxI	GGCC	2 cut(s)	616, 806
ApeKI	GCWGC	2 cut(s)	36, 564
ApoI	RAATTY	3 cut(s)	413, 494, 671
AspS9I	GGNCC	2 cut(s)	686, 1106
AsuC2I	CCSGG	2 cut(s)	544, 545
AsuHPI	GGTGA	3 cut(s)	215, 620, 687
AvaI	CYCGRG	1 cut(s)	543
AvaII	GGWCC	2 cut(s)	686, 1106
BaeGI	GKGCMC	2 cut(s)	332, 721
BalI	TGGCCA	1 cut(s)	618
BbsI	GAAGAC	1 cut(s)	1010
BbvCI	CCTCAGC	1 cut(s)	885
BbvI	GCAGC	2 cut(s)	23, 576
BccI	CCATC	3 cut(s)	287, 605, 824
BciT130I	CCWGG	2 cut(s)	648, 1110
BciVI	GTATCC	1 cut(s)	794
BclI	TGATCA	1 cut(s)	118
BcnI	CCSGG	2 cut(s)	544, 545
BfaI	CTAG	2 cut(s)	539, 705
BfuI	GTATCC	1 cut(s)	794
BisI	GCNGC	4 cut(s)	37, 516, 565, 1122
BlsI	GCNGC	4 cut(s)	38, 517, 566, 1123
Bme1390I	CCNGG	4 cut(s)	544, 545, 648, 1110
Bme18I	GGWCC	2 cut(s)	686, 1106
BmeT110I	CYCGRG	1 cut(s)	543
BmgT120I	GGNCC	2 cut(s)	686, 1106
BmiI	GGNNCC	2 cut(s)	509, 688
BmrFI	CCNGG	4 cut(s)	544, 545, 648, 1110
BmsI	GCATC	1 cut(s)	382
BpiI	GAAGAC	1 cut(s)	1010
Bpu10I	CCTNAGC	2 cut(s)	737, 885
BpuEI	CTTGAG	1 cut(s)	218
BpuMI	CCSGG	2 cut(s)	544, 545
BsaHI	GRCGYC	1 cut(s)	313
BsaJI	CCNNGG	3 cut(s)	543, 679, 1109
BsaXI	ACNNNNNCTCC	2 cut(s)	852, 882
Bsc4I	CCNNNNNNNGG	6 cut(s)	549, 550, 935, 976, 1081, 1082
Bse118I	RCCGGY	1 cut(s)	1013
Bse1I	ACTGG	2 cut(s)	809, 951
Bse3DI	GCAATG	2 cut(s)	348, 970
BseBI	CCWGG	2 cut(s)	648, 1110
BseDI	CCNNGG	3 cut(s)	543, 679, 1109
BseGI	GGATG	1 cut(s)	816
BseLI	CCNNNNNNNGG	6 cut(s)	549, 550, 935, 976, 1081, 1082
BseMI	GCAATG	2 cut(s)	348, 970
BseMII	CTCAG	2 cut(s)	569, 876
BseNI	ACTGG	2 cut(s)	809, 951
BseRI	GAGGAG	1 cut(s)	420
BseSI	GKGCMC	2 cut(s)	332, 721
BseXI	GCAGC	2 cut(s)	23, 576
BsgI	GTGCAG	1 cut(s)	446
BshFI	GGCC	2 cut(s)	618, 808
BsiHKCI	CYCGRG	1 cut(s)	543
BsiSI	CCGG	2 cut(s)	544, 1014
BslFI	GGGAC	2 cut(s)	410, 672
BslI	CCNNNNNNNGG	6 cut(s)	549, 550, 935, 976, 1081, 1082
BsmFI	GGGAC	2 cut(s)	410, 672
BsnI	GGCC	2 cut(s)	618, 808
BsoBI	CYCGRG	1 cut(s)	543
Bsp1286I	GDGCHC	2 cut(s)	332, 721
Bsp143I	GATC	2 cut(s)	118, 1006
BspACI	CCGC	4 cut(s)	516, 567, 684, 1121
BspANI	GGCC	2 cut(s)	618, 808
BspCNI	CTCAG	2 cut(s)	570, 877
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	2 cut(s)	509, 688
BspPI	GGATC	1 cut(s)	1001
BsrDI	GCAATG	2 cut(s)	348, 970
BsrFI	RCCGGY	1 cut(s)	1013
BsrI	ACTGG	2 cut(s)	809, 951
BssAI	RCCGGY	1 cut(s)	1013
BssECI	CCNNGG	3 cut(s)	543, 679, 1109
BssMI	GATC	2 cut(s)	118, 1006
BssNI	GRCGYC	1 cut(s)	313
BssT1I	CCWWGG	1 cut(s)	679
Bst2UI	CCWGG	2 cut(s)	648, 1110
Bst4CI	ACNGT	6 cut(s)	109, 252, 277, 467, 536, 723
Bst6I	CTCTTC	1 cut(s)	234
BstACI	GRCGYC	1 cut(s)	313
BstC8I	GCNNGC	1 cut(s)	595
BstDEI	CTNAG	4 cut(s)	578, 737, 830, 885
BstF5I	GGATG	1 cut(s)	816
BstKTI	GATC	2 cut(s)	121, 1009
BstMBI	GATC	2 cut(s)	118, 1006
BstNI	CCWGG	2 cut(s)	648, 1110
BstSCI	CCNGG	4 cut(s)	542, 543, 646, 1108
BstSLI	GKGCMC	2 cut(s)	332, 721
BstV1I	GCAGC	2 cut(s)	23, 576
BstV2I	GAAGAC	1 cut(s)	1010
BstX2I	RGATCY	1 cut(s)	1006
BstYI	RGATCY	1 cut(s)	1006
BsuI	GTATCC	1 cut(s)	794
BsuRI	GGCC	2 cut(s)	618, 808
BtgZI	GCGATG	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	816
BtsI	GCAGTG	2 cut(s)	589, 844
BtsIMutI	CAGTG	4 cut(s)	114, 575, 589, 844
Cac8I	GCNNGC	1 cut(s)	595
CciI	TCATGA	1 cut(s)	439
Cfr10I	RCCGGY	1 cut(s)	1013
Cfr13I	GGNCC	2 cut(s)	686, 1106
Cfr9I	CCCGGG	1 cut(s)	543
CseI	GACGC	2 cut(s)	114, 302
Csp6I	GTAC	1 cut(s)	378
CviAII	CATG	6 cut(s)	67, 440, 691, 976, 1044, 1081
CviQI	GTAC	1 cut(s)	378
DdeI	CTNAG	4 cut(s)	578, 737, 830, 885
DpnI	GATC	2 cut(s)	120, 1008
DpnII	GATC	2 cut(s)	118, 1006
EaeI	YGGCCR	1 cut(s)	616
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	679
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	2 cut(s)	686, 1106
Eco88I	CYCGRG	1 cut(s)	543
EcoO109I	RGGNCCY	1 cut(s)	1106
EcoRII	CCWGG	2 cut(s)	646, 1108
EcoRV	GATATC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	679
ErhI	CCWWGG	1 cut(s)	679
FaeI	CATG	6 cut(s)	70, 443, 694, 979, 1047, 1084
FaqI	GGGAC	2 cut(s)	410, 672
FatI	CATG	6 cut(s)	66, 439, 690, 975, 1043, 1080
FbaI	TGATCA	1 cut(s)	118
Fnu4HI	GCNGC	4 cut(s)	37, 516, 565, 1122
FokI	GGATG	1 cut(s)	803
Fsp4HI	GCNGC	4 cut(s)	37, 516, 565, 1122
FspBI	CTAG	2 cut(s)	539, 705
GluI	GCNGC	4 cut(s)	37, 516, 565, 1122
HaeIII	GGCC	2 cut(s)	618, 808
HapII	CCGG	2 cut(s)	544, 1014
HgaI	GACGC	2 cut(s)	114, 302
Hin1I	GRCGYC	1 cut(s)	313
Hin1II	CATG	6 cut(s)	70, 443, 694, 979, 1047, 1084
HinfI	GANTC	8 cut(s)	13, 238, 404, 457, 601, 875, 983, 1086
HpaII	CCGG	2 cut(s)	544, 1014
HphI	GGTGA	3 cut(s)	215, 620, 687
Hpy166II	GTNNAC	2 cut(s)	764, 871
Hpy188I	TCNGA	1 cut(s)	318
Hpy188III	TCNNGA	4 cut(s)	235, 440, 638, 929
Hpy8I	GTNNAC	2 cut(s)	764, 871
HpyAV	CCTTC	3 cut(s)	26, 929, 1050
HpyCH4III	ACNGT	6 cut(s)	109, 252, 277, 467, 536, 723
HpyCH4IV	ACGT	2 cut(s)	501, 780
HpyCH4V	TGCA	4 cut(s)	39, 93, 353, 463
HpyF3I	CTNAG	4 cut(s)	578, 737, 830, 885
HpySE526I	ACGT	2 cut(s)	501, 780
Hsp92I	GRCGYC	1 cut(s)	313
Hsp92II	CATG	6 cut(s)	70, 443, 694, 979, 1047, 1084
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	118, 1006
LmnI	GCTCC	1 cut(s)	482
Lsp1109I	GCAGC	2 cut(s)	23, 576
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	2 cut(s)	539, 705
MaeII	ACGT	2 cut(s)	501, 780
MaeIII	GTNAC	2 cut(s)	17, 693
MalI	GATC	2 cut(s)	120, 1008
MboI	GATC	2 cut(s)	118, 1006
MboII	GAAGA	4 cut(s)	221, 302, 978, 1010
MflI	RGATCY	1 cut(s)	1006
MhlI	GDGCHC	2 cut(s)	332, 721
MlsI	TGGCCA	1 cut(s)	618
MluCI	AATT	7 cut(s)	267, 413, 494, 671, 845, 1051, 1056
MluNI	TGGCCA	1 cut(s)	618
MlyI	GAGTC	2 cut(s)	398, 466
MmeI	TCCRAC	1 cut(s)	432
Mox20I	TGGCCA	1 cut(s)	618
MscI	TGGCCA	1 cut(s)	618
MseI	TTAA	5 cut(s)	162, 498, 777, 1055, 1062
Msp20I	TGGCCA	1 cut(s)	618
MspA1I	CMGCKG	2 cut(s)	567, 1121
MspI	CCGG	2 cut(s)	544, 1014
MspR9I	CCNGG	4 cut(s)	544, 545, 648, 1110
MvaI	CCWGG	2 cut(s)	648, 1110
NciI	CCSGG	2 cut(s)	544, 545
NdeII	GATC	2 cut(s)	118, 1006
NlaIII	CATG	6 cut(s)	70, 443, 694, 979, 1047, 1084
NlaIV	GGNNCC	2 cut(s)	509, 688
NmuCI	GTSAC	1 cut(s)	693
PagI	TCATGA	1 cut(s)	439
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PfeI	GAWTC	6 cut(s)	13, 238, 601, 875, 983, 1086
PflMI	CCANNNNNTGG	1 cut(s)	976
PkrI	GCNGC	4 cut(s)	38, 517, 566, 1123
PleI	GAGTC	2 cut(s)	398, 465
PpsI	GAGTC	2 cut(s)	398, 465
PpuMI	RGGWCCY	1 cut(s)	1106
Psp5II	RGGWCCY	1 cut(s)	1106
Psp6I	CCWGG	2 cut(s)	646, 1108
PspGI	CCWGG	2 cut(s)	646, 1108
PspN4I	GGNNCC	2 cut(s)	509, 688
PspPI	GGNCC	2 cut(s)	686, 1106
PspPPI	RGGWCCY	1 cut(s)	1106
PsuI	RGATCY	1 cut(s)	1006
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
SaqAI	TTAA	5 cut(s)	162, 498, 777, 1055, 1062
SatI	GCNGC	4 cut(s)	37, 516, 565, 1122
Sau3AI	GATC	2 cut(s)	118, 1006
Sau96I	GGNCC	2 cut(s)	686, 1106
SchI	GAGTC	2 cut(s)	398, 466
ScrFI	CCNGG	4 cut(s)	544, 545, 648, 1110
SduI	GDGCHC	2 cut(s)	332, 721
SfaNI	GCATC	1 cut(s)	382
SinI	GGWCC	2 cut(s)	686, 1106
SmaI	CCCGGG	1 cut(s)	545
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	7 cut(s)	267, 413, 494, 671, 845, 1051, 1056
SsiI	CCGC	4 cut(s)	516, 567, 684, 1121
SspMI	CTAG	2 cut(s)	539, 705
StyD4I	CCNGG	4 cut(s)	542, 543, 646, 1108
StyI	CCWWGG	1 cut(s)	679
TaaI	ACNGT	6 cut(s)	109, 252, 277, 467, 536, 723
TaiI	ACGT	2 cut(s)	504, 783
TaqI	TCGA	2 cut(s)	30, 87
TasI	AATT	7 cut(s)	267, 413, 494, 671, 845, 1051, 1056
TauI	GCSGC	2 cut(s)	518, 1124
TfiI	GAWTC	6 cut(s)	13, 238, 601, 875, 983, 1086
Tru1I	TTAA	5 cut(s)	162, 498, 777, 1055, 1062
Tru9I	TTAA	5 cut(s)	162, 498, 777, 1055, 1062
TscAI	CASTG	4 cut(s)	114, 582, 589, 844
TseFI	GTSAC	1 cut(s)	693
TseI	GCWGC	2 cut(s)	36, 564
Tsp45I	GTSAC	1 cut(s)	693
TspDTI	ATGAA	3 cut(s)	55, 948, 1032
TspGWI	ACGGA	3 cut(s)	93, 351, 495
TspMI	CCCGGG	1 cut(s)	543
TspRI	CASTG	4 cut(s)	114, 582, 589, 844
Van91I	CCANNNNNTGG	1 cut(s)	976
VpaK11BI	GGWCC	2 cut(s)	686, 1106
XapI	RAATTY	3 cut(s)	413, 494, 671
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1097
XmaI	CCCGGG	1 cut(s)	543
XspI	CTAG	2 cut(s)	539, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.