Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004413

Physical Location & Seq

Genomic Coordinates Forward (+)

26675318 .. 26678080

Gene Structure 2763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00103690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGGGACGACTTACTTGCCAAGACAAGCACCGGTCAAGACCTTGGAATTTATTTCATTTATCAATAGAAGAATTGAAACCTTGGAGAACAATAATCCAATCATCAAAACCATAAAGGGCGATGAAGGTGATGTGATAGATTGCATTGACATCTATAAGCAGCCTGCTCTTAGTCATCCACTTCTCAAAAATCATACTATACAGCTGAATCCGCCAAGTCCGTATCCAAGTGGAATTAATGAAACAGAAAGTTCTCATCAAGATGACGAGCAAGTACTGAAATCTTGGCTATTGAATGAAGAGTGCCCAGAAGGAACAATCCCCATTCTTCGTACTCAGGGTTTTAATAGTTCTTTTCCTAAATCTAGCCCACCTTTCAATGGAAGCAACGTTGAGTTCACGCCTGCATCTGGTCATGAGTACGCCATAGCTAGTCTTTTAGGTGGCCAATATTACGGAGCACACGCATCTGTGAACGTATGGAGCCCTTTATCAGTTTTTGAGGAGAATAGTATATCCCAGATATGGGTAGCGGGAGGTCATGAACAAGCGCGAAGTACTGTTGAAGCTGGGTGGAAAATTAATTCGGCTGACCAGCAAACAAGGTTCTTCATATTCTGGACAGGCCATGGTTACCAAGATGGTTGCTACAATCTTCAATGTCCTGGTTTCGTCCAAGTAAACAGAAAGTTTGCCCTAGGTTTACCCATTAAACCTGTTTCAATGTACAACGGCAAACAAGTTGAAATATTCATAAGTATATACAAGCACCAATCGACTGGACAGTGGTGGGTTATGTTGCAAGATCAAGCATTAGGATACTGGCCAGACAAAATCTTACCAAGTCTGAGAGGCAGTGCTGACGCGGTTAGCTGGGGTGGTGAGATTTACAATTCAGAAATTGGAGGTCGTCACACATCAACTCAGATGGGGAGTGGTCATTTCCCGAGTGAAGGCTATGGCAAAGCAAGCTATTTTCGAAATATTCAGTACTTGGCCAACTCTGGAAAGTTTGTAGATGCACAAGGACTTATACCTTATGTCACAAAGCCTTCATGCTACAACCTTATTATGAAAAATAAAGCCCCAGGATTTGGAAACCATTTCTATTACGGGGGATTTGGATATTCAGCAAGATGCCCTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

382

Amino Acids

42.55

Weight (kDa)

6.6

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Neprosin_AP	PF14365	37 - 114	1.3e-22	Neprosin activation peptide
Neprosin	PF03080	169 - 373	1.5e-69	Neprosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17750 AT2G44220 AT2G44240
fragaria_vesca	FvH4_6g32790
malus_domestica	MD09G1198100.v1.1
prunus_persica	Prupe.3G054100_v2.0.a1 Prupe.3G054200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0141911 RchiOBHm_Chr2g0141931 RchiOBHm_Chr2g0141971
rosa_laevigata	RLG00000019942
rosa_multiflora	Rmu_co8265735.1_g000001 Rmu_co8330971.1_g000001 Rmu_sc0001287.1_g000036 Rmu_sc0004757.1_g000021 Rmu_sc0009946.1_g000003 Rmu_sc0009946.1_g000009
rosa_roxburghii	Rroxscaffold_2G00103690 Rroxscaffold_2G00103720
rosa_rugosa	Rorug02G0369200 Rorug02G0369300 Rorug02G0369400
rosa_samantha	Rh2AG421400 Rh2AG421600 Rh2AG421700 Rh2AG422100 Rh2BG431900 Rh2CG408700 Rh2CG408900 Rh2DG441900
rosa_wichuraiana	Rw2G034570 Rw2G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1094
AccII	CGCG	2 cut(s)	553, 866
AciI	CCGC	3 cut(s)	212, 533, 866
AclI	AACGTT	1 cut(s)	390
AcoI	YGGCCR	3 cut(s)	445, 824, 996
AcsI	RAATTY	1 cut(s)	47
AfaI	GTAC	6 cut(s)	276, 334, 422, 559, 728, 992
AfiI	CCNNNNNNNGG	6 cut(s)	380, 410, 525, 526, 953, 1094
AgeI	ACCGGT	1 cut(s)	31
AgsI	TTSAA	7 cut(s)	77, 295, 379, 566, 659, 723, 746
AjnI	CCWGG	2 cut(s)	664, 1087
AluBI	AGCT	5 cut(s)	205, 431, 569, 873, 972
AluI	AGCT	5 cut(s)	205, 431, 569, 873, 972
Alw21I	GWGCWC	1 cut(s)	463
Ama87I	CYCGRG	1 cut(s)	946
AoxI	GGCC	4 cut(s)	445, 625, 824, 996
ApeKI	GCWGC	1 cut(s)	160
ApoI	RAATTY	1 cut(s)	47
AseI	ATTAAT	2 cut(s)	237, 582
AsiGI	ACCGGT	1 cut(s)	31
AspA2I	CCTAGG	1 cut(s)	697
AspLEI	GCGC	1 cut(s)	553
AsuHPI	GGTGA	2 cut(s)	140, 893
AsuII	TTCGAA	1 cut(s)	979
AvaI	CYCGRG	1 cut(s)	946
AvrII	CCTAGG	1 cut(s)	697
BaeGI	GKGCMC	1 cut(s)	308
BalI	TGGCCA	3 cut(s)	447, 826, 998
BanII	GRGCYC	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	463
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	2 cut(s)	635, 922
BceAI	ACGGC	1 cut(s)	748
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	2 cut(s)	666, 1089
BciVI	GTATCC	2 cut(s)	234, 812
BfaI	CTAG	3 cut(s)	366, 432, 698
BfuI	GTATCC	2 cut(s)	234, 812
BisI	GCNGC	1 cut(s)	161
BlnI	CCTAGG	1 cut(s)	697
BlsI	GCNGC	1 cut(s)	162
BmcAI	AGTACT	3 cut(s)	276, 559, 992
Bme1390I	CCNGG	2 cut(s)	666, 1089
BmeT110I	CYCGRG	1 cut(s)	946
BmiI	GGNNCC	1 cut(s)	485
BmrFI	CCNGG	2 cut(s)	666, 1089
BmsI	GCATC	4 cut(s)	416, 476, 1009, 1127
Bpu14I	TTCGAA	1 cut(s)	979
BsaJI	CCNNGG	5 cut(s)	42, 81, 628, 697, 1087
BsaWI	WCCGGW	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	6 cut(s)	380, 410, 525, 526, 953, 1094
Bse118I	RCCGGY	1 cut(s)	31
Bse1I	ACTGG	2 cut(s)	784, 827
BseBI	CCWGG	2 cut(s)	666, 1089
BseDI	CCNNGG	5 cut(s)	42, 81, 628, 697, 1087
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	6 cut(s)	380, 410, 525, 526, 953, 1094
BseMII	CTCAG	3 cut(s)	350, 839, 938
BseNI	ACTGG	2 cut(s)	784, 827
BseRI	GAGGAG	1 cut(s)	518
BseSI	GKGCMC	1 cut(s)	308
BseXI	GCAGC	1 cut(s)	172
BseYI	CCCAGC	2 cut(s)	569, 873
Bsh1236I	CGCG	2 cut(s)	553, 866
BshFI	GGCC	4 cut(s)	447, 627, 826, 998
BshTI	ACCGGT	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	463
BsiHKCI	CYCGRG	1 cut(s)	946
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	6 cut(s)	380, 410, 525, 526, 953, 1094
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	4 cut(s)	447, 627, 826, 998
BsoBI	CYCGRG	1 cut(s)	946
Bsp119I	TTCGAA	1 cut(s)	979
Bsp1286I	GDGCHC	3 cut(s)	308, 463, 488
Bsp1407I	TGTACA	1 cut(s)	726
Bsp143I	GATC	1 cut(s)	805
Bsp19I	CCATGG	1 cut(s)	628
BspACI	CCGC	3 cut(s)	212, 533, 866
BspANI	GGCC	4 cut(s)	447, 627, 826, 998
BspCNI	CTCAG	3 cut(s)	349, 840, 937
BspFNI	CGCG	2 cut(s)	553, 866
BspHI	TCATGA	2 cut(s)	415, 541
BspLI	GGNNCC	1 cut(s)	485
BspT104I	TTCGAA	1 cut(s)	979
BsrFI	RCCGGY	1 cut(s)	31
BsrGI	TGTACA	1 cut(s)	726
BsrI	ACTGG	2 cut(s)	784, 827
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	5 cut(s)	42, 81, 628, 697, 1087
BssMI	GATC	1 cut(s)	805
BssT1I	CCWWGG	4 cut(s)	42, 81, 628, 697
Bst2UI	CCWGG	2 cut(s)	666, 1089
Bst4CI	ACNGT	2 cut(s)	562, 786
Bst6I	CTCTTC	1 cut(s)	294
BstAUI	TGTACA	1 cut(s)	726
BstBI	TTCGAA	1 cut(s)	979
BstC8I	GCNNGC	3 cut(s)	165, 405, 970
BstDEI	CTNAG	4 cut(s)	170, 336, 848, 924
BstDSI	CCRYGG	1 cut(s)	628
BstEII	GGTNACC	1 cut(s)	632
BstF5I	GGATG	1 cut(s)	175
BstFNI	CGCG	2 cut(s)	553, 866
BstHHI	GCGC	1 cut(s)	553
BstKTI	GATC	1 cut(s)	808
BstMBI	GATC	1 cut(s)	805
BstMWI	GCNNNNNNNGC	2 cut(s)	211, 969
BstNI	CCWGG	2 cut(s)	666, 1089
BstPI	GGTNACC	1 cut(s)	632
BstSCI	CCNGG	2 cut(s)	664, 1087
BstSLI	GKGCMC	1 cut(s)	308
BstUI	CGCG	2 cut(s)	553, 866
BstV1I	GCAGC	1 cut(s)	172
BstXI	CCANNNNNNTGG	1 cut(s)	779
BsuI	GTATCC	2 cut(s)	234, 812
BsuRI	GGCC	4 cut(s)	447, 627, 826, 998
BtgI	CCRYGG	1 cut(s)	628
BtgZI	GCGATG	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	175
BtsI	GCAGTG	1 cut(s)	862
BtsIMutI	CAGTG	2 cut(s)	791, 862
Cac8I	GCNNGC	3 cut(s)	165, 405, 970
CciI	TCATGA	2 cut(s)	415, 541
CfoI	GCGC	1 cut(s)	553
Cfr10I	RCCGGY	1 cut(s)	31
CseI	GACGC	1 cut(s)	872
Csp6I	GTAC	6 cut(s)	275, 333, 421, 558, 727, 991
CspAI	ACCGGT	1 cut(s)	31
CviAII	CATG	4 cut(s)	416, 542, 629, 1056
CviQI	GTAC	6 cut(s)	275, 333, 421, 558, 727, 991
DdeI	CTNAG	4 cut(s)	170, 336, 848, 924
DpnI	GATC	1 cut(s)	807
DpnII	GATC	1 cut(s)	805
EaeI	YGGCCR	3 cut(s)	445, 824, 996
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
EciI	GGCGGA	1 cut(s)	201
Eco130I	CCWWGG	4 cut(s)	42, 81, 628, 697
Eco24I	GRGCYC	1 cut(s)	488
Eco88I	CYCGRG	1 cut(s)	946
Eco91I	GGTNACC	1 cut(s)	632
EcoO65I	GGTNACC	1 cut(s)	632
EcoRII	CCWGG	2 cut(s)	664, 1087
EcoT14I	CCWWGG	4 cut(s)	42, 81, 628, 697
EcoT38I	GRGCYC	1 cut(s)	488
ErhI	CCWWGG	4 cut(s)	42, 81, 628, 697
FaeI	CATG	4 cut(s)	419, 545, 632, 1059
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	4 cut(s)	415, 541, 628, 1055
FauI	CCCGC	1 cut(s)	526
Fnu4HI	GCNGC	1 cut(s)	161
FokI	GGATG	1 cut(s)	162
FriOI	GRGCYC	1 cut(s)	488
Fsp4HI	GCNGC	1 cut(s)	161
FspBI	CTAG	3 cut(s)	366, 432, 698
GlaI	GCGC	1 cut(s)	552
GluI	GCNGC	1 cut(s)	161
GsaI	CCCAGC	2 cut(s)	573, 877
HaeIII	GGCC	4 cut(s)	447, 627, 826, 998
HapII	CCGG	1 cut(s)	32
HgaI	GACGC	1 cut(s)	872
HhaI	GCGC	1 cut(s)	553
Hin1II	CATG	4 cut(s)	419, 545, 632, 1059
Hin6I	GCGC	1 cut(s)	551
HinP1I	GCGC	1 cut(s)	551
HinfI	GANTC	1 cut(s)	208
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	2 cut(s)	140, 893
Hpy166II	GTNNAC	4 cut(s)	399, 475, 682, 704
Hpy188I	TCNGA	3 cut(s)	849, 898, 927
Hpy188III	TCNNGA	7 cut(s)	37, 260, 416, 542, 619, 946, 1005
Hpy8I	GTNNAC	4 cut(s)	399, 475, 682, 704
HpyAV	CCTTC	4 cut(s)	119, 305, 947, 1062
HpyCH4III	ACNGT	2 cut(s)	562, 786
HpyCH4IV	ACGT	2 cut(s)	390, 477
HpyCH4V	TGCA	4 cut(s)	144, 407, 802, 1022
HpyF10VI	GCNNNNNNNGC	2 cut(s)	211, 969
HpyF3I	CTNAG	4 cut(s)	170, 336, 848, 924
HpySE526I	ACGT	2 cut(s)	390, 477
Hsp92II	CATG	4 cut(s)	419, 545, 632, 1059
HspAI	GCGC	1 cut(s)	551
Kzo9I	GATC	1 cut(s)	805
LmnI	GCTCC	2 cut(s)	458, 483
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	4 cut(s)	416, 476, 1009, 1127
MaeI	CTAG	3 cut(s)	366, 432, 698
MaeII	ACGT	2 cut(s)	390, 477
MaeIII	GTNAC	3 cut(s)	632, 911, 1042
MalI	GATC	1 cut(s)	807
MboI	GATC	1 cut(s)	805
MboII	GAAGA	5 cut(s)	81, 311, 320, 601, 647
MhlI	GDGCHC	3 cut(s)	308, 463, 488
MlsI	TGGCCA	3 cut(s)	447, 826, 998
MluCI	AATT	7 cut(s)	47, 72, 234, 579, 583, 892, 900
MluNI	TGGCCA	3 cut(s)	447, 826, 998
MnlI	CCTC	4 cut(s)	496, 530, 845, 899
Mox20I	TGGCCA	3 cut(s)	447, 826, 998
MscI	TGGCCA	3 cut(s)	447, 826, 998
MseI	TTAA	4 cut(s)	237, 345, 582, 711
MslI	CAYNNNNRTG	1 cut(s)	261
Msp20I	TGGCCA	3 cut(s)	447, 826, 998
MspA1I	CMGCKG	1 cut(s)	205
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	2 cut(s)	666, 1089
MvaI	CCWGG	2 cut(s)	666, 1089
MvnI	CGCG	2 cut(s)	553, 866
MwoI	GCNNNNNNNGC	2 cut(s)	211, 969
NcoI	CCATGG	1 cut(s)	628
NdeII	GATC	1 cut(s)	805
NlaIII	CATG	4 cut(s)	419, 545, 632, 1059
NlaIV	GGNNCC	1 cut(s)	485
NmuCI	GTSAC	2 cut(s)	911, 1042
NspV	TTCGAA	1 cut(s)	979
PagI	TCATGA	2 cut(s)	415, 541
PfeI	GAWTC	1 cut(s)	208
PflMI	CCANNNNNTGG	1 cut(s)	1094
PinAI	ACCGGT	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	162
PshBI	ATTAAT	2 cut(s)	237, 582
Psp1406I	AACGTT	1 cut(s)	390
Psp6I	CCWGG	2 cut(s)	664, 1087
PspEI	GGTNACC	1 cut(s)	632
PspFI	CCCAGC	2 cut(s)	569, 873
PspGI	CCWGG	2 cut(s)	664, 1087
PspN4I	GGNNCC	1 cut(s)	485
PvuII	CAGCTG	1 cut(s)	205
RsaI	GTAC	6 cut(s)	276, 334, 422, 559, 728, 992
RsaNI	GTAC	6 cut(s)	275, 333, 421, 558, 727, 991
RseI	CAYNNNNRTG	1 cut(s)	261
SaqAI	TTAA	4 cut(s)	237, 345, 582, 711
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	1 cut(s)	805
ScaI	AGTACT	3 cut(s)	276, 559, 992
ScrFI	CCNGG	2 cut(s)	666, 1089
SduI	GDGCHC	3 cut(s)	308, 463, 488
SfaNI	GCATC	4 cut(s)	416, 476, 1009, 1127
SfuI	TTCGAA	1 cut(s)	979
SmiMI	CAYNNNNRTG	1 cut(s)	261
Sse9I	AATT	7 cut(s)	47, 72, 234, 579, 583, 892, 900
SsiI	CCGC	3 cut(s)	212, 533, 866
SspI	AATATT	3 cut(s)	452, 750, 985
SspMI	CTAG	3 cut(s)	366, 432, 698
StyD4I	CCNGG	2 cut(s)	664, 1087
StyI	CCWWGG	4 cut(s)	42, 81, 628, 697
TaaI	ACNGT	2 cut(s)	562, 786
TaiI	ACGT	2 cut(s)	393, 480
TaqI	TCGA	2 cut(s)	776, 979
TasI	AATT	7 cut(s)	47, 72, 234, 579, 583, 892, 900
TatI	WGTACW	4 cut(s)	274, 557, 726, 990
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	4 cut(s)	237, 345, 582, 711
Tru9I	TTAA	4 cut(s)	237, 345, 582, 711
TscAI	CASTG	2 cut(s)	791, 862
TseFI	GTSAC	2 cut(s)	911, 1042
TseI	GCWGC	1 cut(s)	160
Tsp45I	GTSAC	2 cut(s)	911, 1042
TspDTI	ATGAA	9 cut(s)	45, 138, 255, 312, 558, 601, 742, 1044, 1088
TspGWI	ACGGA	2 cut(s)	210, 471
TspRI	CASTG	2 cut(s)	791, 862
Van91I	CCANNNNNTGG	1 cut(s)	1094
VspI	ATTAAT	2 cut(s)	237, 582
XapI	RAATTY	1 cut(s)	47
XmaJI	CCTAGG	1 cut(s)	697
XspI	CTAG	3 cut(s)	366, 432, 698
ZrmI	AGTACT	3 cut(s)	276, 559, 992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.