AT2G44240

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004413
Physical Location & Seq
Forward (+)
18289824 .. 18292374
2551 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G44240.1

Sequence Viewer

Length: 1209 bp
ATGATGGGAGTGGCCGGTTTTGCGGTAGCTCTGATGGTAACTTCACTGTTAATCGCTACTTGCGCTGATGGAAAAGAGTTTTTTCATCACCGGGAAATTAAAGTACAAAGATTTTTGAAGCAGCTTAACAAGCCAGCTCTTAAATCCATTAAGAGTGAAGACGGAGATATAATTGATTGTGTTCTAATAACTAGCCAACCAGCTTTTGATCATCCTTTGCTTAAAAATCACACCATTCAGGTAAAACCAAGTTTTATCCCGGAAGGGGAAGGTGACTCTACGTACACCAAGAAGGAGACAAAAGCTACTCAAGTGTGGCAGAAATATGGAGAGTGCCCAGAAAACACTATCCCGATAAGAAGAACAAAAAAAGAAGAAATCTTACGAGCAAAATCCCTTGAAAGTTTCGGGAAAAAGAATCATCAATACATTCCTGAAGATACATCTAGTCCAAATTATCACCATGAGTACGCGTTCATGGGTGTGAGAAACGGAAAGTTTTACGGGACAAAAGCCTCGATAAATGTCTGGAAACCAGATGTAGCAACTCCCAGCGAGTTCAGCTTGTCACAGACTTGGATCGTATCTGGAGATGGCACTAGTCGTAATACTATTGAAGCTGGTTGGCAGGTTTATCCAGGAATGTACGGTAATAATGATCCTAGATTATTTGTTTATTGGACCAGCGATGGATACCAAAAGACAGGATGCTATAATCTCGTCTGCGGTGGTTTTGTTCAGACGACCAACCAATACACTGTAGGTGGATCCTACGTTACCGCGTCACAATACGACGGAGCTCAACTAGTTCTCAACCTACTTATATGGAAGGACCCAAAAACAGGAAACTGGTGGCTAAAGATTAATGACAACGATGTTATAGGGTACTGGCCTGGCTCGTTGTTCAATTCTCTAGGAGATGGAGCTATAAAAGTTGAATGGGGTGGCGAAATCTTCGCGCCAACCAGTGATAGACACACAACCACCGATATGGGAAGTGGACATTTTGCAGAGGAAGGGATTAAGAAAGCGAGCTATGTAAAAAATATTATGATAGTTGATGGGACAAATGCTCTGAGAGAACCACAAGGACTTTACTCCTATGCTGATAATCGTAATTGTTACAGCGTTGTACCAGGAAATGCTGGAACTTCCTTTGGTACTCATTTCTTCTATGGTGGTCCTGGTCAGAACGTTAAATGCCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Neprosin Neprosin_AP

Protein Analysis

402

Amino Acids

44.71

Weight (kDa)

7.12

Isoelectric Point (pI)

22.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Neprosin_AP PF14365 49 - 160 2.7e-42 Neprosin activation peptide
Neprosin PF03080 185 - 395 2.9e-80 Neprosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 619
AccII CGCG 3 cut(s) 473, 782, 959
AciI CCGC 3 cut(s) 23, 726, 780
AclI AACGTT 1 cut(s) 1194
AclWI GGATC 4 cut(s) 587, 653, 762, 775
AcoI YGGCCR 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 456
AfaI GTAC 7 cut(s) 105, 284, 470, 647, 887, 1134, 1162
AfiI CCNNNNNNNGG 2 cut(s) 265, 842
AflIII ACRYGT 1 cut(s) 471
AgsI TTSAA 5 cut(s) 118, 401, 617, 907, 938
AhlI ACTAGT 2 cut(s) 599, 805
AjnI CCWGG 4 cut(s) 637, 892, 1135, 1183
Alw21I GWGCWC 1 cut(s) 802
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 4 cut(s) 587, 653, 762, 775
AoxI GGCC 2 cut(s) 12, 890
ApeKI GCWGC 1 cut(s) 121
AseI ATTAAT 1 cut(s) 864
AspLEI GCGC 2 cut(s) 65, 961
AspS9I GGNCC 3 cut(s) 681, 832, 1181
AsuC2I CCSGG 2 cut(s) 92, 260
AsuHPI GGTGA 3 cut(s) 80, 284, 452
AvaII GGWCC 3 cut(s) 681, 832, 1181
BaeGI GKGCMC 1 cut(s) 338
BamHI GGATCC 1 cut(s) 767
BanII GRGCYC 1 cut(s) 802
BarI GAAGNNNNNNTAC 2 cut(s) 366, 398
BbsI GAAGAC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 802
BbvI GCAGC 1 cut(s) 133
BccI CCATC 6 cut(s) 28, 62, 587, 683, 914, 1055
BciT130I CCWGG 4 cut(s) 639, 894, 1137, 1185
BciVI GTATCC 1 cut(s) 686
BclI TGATCA 1 cut(s) 208
BcnI CCSGG 2 cut(s) 92, 260
BcoDI GTCTC 1 cut(s) 290
BcuI ACTAGT 2 cut(s) 599, 805
BfaI CTAG 6 cut(s) 192, 447, 600, 663, 806, 914
BfmI CTRYAG 1 cut(s) 759
BfuAI ACCTGC 1 cut(s) 619
BfuI GTATCC 1 cut(s) 686
BisI GCNGC 1 cut(s) 122
BlsI GCNGC 1 cut(s) 123
Bme1390I CCNGG 6 cut(s) 92, 260, 639, 894, 1137, 1185
Bme18I GGWCC 3 cut(s) 681, 832, 1181
BmgT120I GGNCC 3 cut(s) 681, 832, 1181
BmiI GGNNCC 2 cut(s) 769, 834
BmrFI CCNGG 6 cut(s) 92, 260, 639, 894, 1137, 1185
BmsI GCATC 1 cut(s) 698
BpiI GAAGAC 1 cut(s) 165
BpmI CTGGAG 1 cut(s) 609
BpuEI CTTGAG 1 cut(s) 294
BpuMI CCSGG 2 cut(s) 92, 260
BsaAI YACGTR 1 cut(s) 282
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 842
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 3 cut(s) 854, 893, 966
BseBI CCWGG 4 cut(s) 639, 894, 1137, 1185
BseGI GGATG 2 cut(s) 211, 713
BseLI CCNNNNNNNGG 2 cut(s) 265, 842
BseMII CTCAG 1 cut(s) 1067
BseNI ACTGG 3 cut(s) 854, 893, 966
BseSI GKGCMC 1 cut(s) 338
BseXI GCAGC 1 cut(s) 133
BseYI CCCAGC 1 cut(s) 551
Bsh1236I CGCG 3 cut(s) 473, 782, 959
BshFI GGCC 2 cut(s) 14, 892
BsiHKAI GWGCWC 1 cut(s) 802
BsiSI CCGG 3 cut(s) 15, 91, 260
BslFI GGGAC 2 cut(s) 520, 1078
BslI CCNNNNNNNGG 2 cut(s) 265, 842
BsmAI GTCTC 1 cut(s) 290
BsmFI GGGAC 2 cut(s) 520, 1078
BsnI GGCC 2 cut(s) 14, 892
Bsp1286I GDGCHC 2 cut(s) 338, 802
Bsp143I GATC 4 cut(s) 208, 579, 658, 767
BspACI CCGC 3 cut(s) 23, 726, 780
BspANI GGCC 2 cut(s) 14, 892
BspCNI CTCAG 1 cut(s) 1068
BspFNI CGCG 3 cut(s) 473, 782, 959
BspLI GGNNCC 2 cut(s) 769, 834
BspMI ACCTGC 1 cut(s) 619
BspPI GGATC 4 cut(s) 587, 653, 762, 775
BsrFI RCCGGY 1 cut(s) 14
BsrI ACTGG 3 cut(s) 854, 893, 966
BssAI RCCGGY 1 cut(s) 14
BssMI GATC 4 cut(s) 208, 579, 658, 767
Bst2UI CCWGG 4 cut(s) 639, 894, 1137, 1185
Bst4CI ACNGT 3 cut(s) 48, 650, 760
BstBAI YACGTR 1 cut(s) 282
BstC8I GCNNGC 2 cut(s) 135, 1033
BstDEI CTNAG 1 cut(s) 1076
BstF5I GGATG 2 cut(s) 211, 713
BstFNI CGCG 3 cut(s) 473, 782, 959
BstHHI GCGC 2 cut(s) 65, 961
BstKTI GATC 4 cut(s) 211, 582, 661, 770
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 4 cut(s) 208, 579, 658, 767
BstMWI GCNNNNNNNGC 4 cut(s) 20, 62, 130, 561
BstNI CCWGG 4 cut(s) 639, 894, 1137, 1185
BstSCI CCNGG 6 cut(s) 90, 258, 637, 892, 1135, 1183
BstSFI CTRYAG 1 cut(s) 759
BstSLI GKGCMC 1 cut(s) 338
BstSNI TACGTA 1 cut(s) 282
BstUI CGCG 3 cut(s) 473, 782, 959
BstV1I GCAGC 1 cut(s) 133
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 1 cut(s) 767
BstXI CCANNNNNNTGG 1 cut(s) 991
BstYI RGATCY 1 cut(s) 767
BsuI GTATCC 1 cut(s) 686
BsuRI GGCC 2 cut(s) 14, 892
BtgZI GCGATG 1 cut(s) 702
BtsCI GGATG 2 cut(s) 211, 713
BtsIMutI CAGTG 3 cut(s) 44, 756, 973
BveI ACCTGC 1 cut(s) 619
Cac8I GCNNGC 2 cut(s) 135, 1033
CfoI GCGC 2 cut(s) 65, 961
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 3 cut(s) 681, 832, 1181
CseI GACGC 1 cut(s) 771
Csp6I GTAC 7 cut(s) 104, 283, 469, 646, 886, 1133, 1161
CviAII CATG 2 cut(s) 464, 478
CviQI GTAC 7 cut(s) 104, 283, 469, 646, 886, 1133, 1161
DdeI CTNAG 1 cut(s) 1076
DpnI GATC 4 cut(s) 210, 581, 660, 769
DpnII GATC 4 cut(s) 208, 579, 658, 767
EaeI YGGCCR 1 cut(s) 12
Ecl136II GAGCTC 1 cut(s) 800
Eco105I TACGTA 1 cut(s) 282
Eco24I GRGCYC 1 cut(s) 802
Eco47I GGWCC 3 cut(s) 681, 832, 1181
Eco53kI GAGCTC 1 cut(s) 800
Eco57I CTGAAG 1 cut(s) 456
EcoICRI GAGCTC 1 cut(s) 800
EcoO109I RGGNCCY 1 cut(s) 832
EcoRII CCWGG 4 cut(s) 637, 892, 1135, 1183
EcoT38I GRGCYC 1 cut(s) 802
FaeI CATG 2 cut(s) 467, 481
FaqI GGGAC 2 cut(s) 520, 1078
FatI CATG 2 cut(s) 463, 477
FbaI TGATCA 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 122
FokI GGATG 2 cut(s) 198, 720
FriOI GRGCYC 1 cut(s) 802
Fsp4HI GCNGC 1 cut(s) 122
FspBI CTAG 6 cut(s) 192, 447, 600, 663, 806, 914
GlaI GCGC 2 cut(s) 64, 960
GluI GCNGC 1 cut(s) 122
GsaI CCCAGC 1 cut(s) 555
GsuI CTGGAG 1 cut(s) 609
HaeIII GGCC 2 cut(s) 14, 892
HapII CCGG 3 cut(s) 15, 91, 260
HgaI GACGC 1 cut(s) 771
HhaI GCGC 2 cut(s) 65, 961
Hin1II CATG 2 cut(s) 467, 481
Hin6I GCGC 2 cut(s) 63, 959
HinP1I GCGC 2 cut(s) 63, 959
HinfI GANTC 2 cut(s) 275, 418
HpaII CCGG 3 cut(s) 15, 91, 260
HphI GGTGA 3 cut(s) 80, 284, 452
Hpy166II GTNNAC 2 cut(s) 285, 1001
Hpy188I TCNGA 4 cut(s) 33, 741, 1077, 1191
Hpy188III TCNNGA 5 cut(s) 352, 409, 434, 529, 588
Hpy8I GTNNAC 2 cut(s) 285, 1001
Hpy99I CGWCG 1 cut(s) 797
HpyAV CCTTC 5 cut(s) 257, 263, 286, 823, 1010
HpyCH4III ACNGT 3 cut(s) 48, 650, 760
HpyCH4IV ACGT 3 cut(s) 281, 774, 1194
HpyCH4V TGCA 1 cut(s) 1010
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 62, 130, 561
HpyF3I CTNAG 1 cut(s) 1076
HpySE526I ACGT 3 cut(s) 281, 774, 1194
Hsp92II CATG 2 cut(s) 467, 481
HspAI GCGC 2 cut(s) 63, 959
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 4 cut(s) 208, 579, 658, 767
LmnI GCTCC 2 cut(s) 797, 923
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 1 cut(s) 698
MaeI CTAG 6 cut(s) 192, 447, 600, 663, 806, 914
MaeII ACGT 3 cut(s) 281, 774, 1194
MaeIII GTNAC 6 cut(s) 37, 272, 567, 775, 783, 1121
MalI GATC 4 cut(s) 210, 581, 660, 769
MboI GATC 4 cut(s) 208, 579, 658, 767
MboII GAAGA 6 cut(s) 170, 372, 386, 449, 946, 1162
MflI RGATCY 1 cut(s) 767
MhlI GDGCHC 2 cut(s) 338, 802
MluCI AATT 5 cut(s) 96, 171, 454, 907, 1117
MluI ACGCGT 1 cut(s) 471
MlyI GAGTC 1 cut(s) 269
MnlI CCTC 2 cut(s) 526, 1006
MseI TTAA 9 cut(s) 50, 99, 126, 141, 150, 222, 864, 1023, 1197
MslI CAYNNNNRTG 2 cut(s) 482, 989
MspI CCGG 3 cut(s) 15, 91, 260
MspR9I CCNGG 6 cut(s) 92, 260, 639, 894, 1137, 1185
MvaI CCWGG 4 cut(s) 639, 894, 1137, 1185
MvnI CGCG 3 cut(s) 473, 782, 959
MwoI GCNNNNNNNGC 4 cut(s) 20, 62, 130, 561
NciI CCSGG 2 cut(s) 92, 260
NdeII GATC 4 cut(s) 208, 579, 658, 767
NlaIII CATG 2 cut(s) 467, 481
NlaIV GGNNCC 2 cut(s) 769, 834
NmuCI GTSAC 3 cut(s) 272, 567, 783
PfeI GAWTC 1 cut(s) 418
PfoI TCCNGGA 2 cut(s) 258, 637
PkrI GCNGC 1 cut(s) 123
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
Ppu21I YACGTR 1 cut(s) 282
PpuMI RGGWCCY 1 cut(s) 832
PshBI ATTAAT 1 cut(s) 864
Psp124BI GAGCTC 1 cut(s) 802
Psp1406I AACGTT 1 cut(s) 1194
Psp5II RGGWCCY 1 cut(s) 832
Psp6I CCWGG 4 cut(s) 637, 892, 1135, 1183
PspFI CCCAGC 1 cut(s) 551
PspGI CCWGG 4 cut(s) 637, 892, 1135, 1183
PspN4I GGNNCC 2 cut(s) 769, 834
PspPI GGNCC 3 cut(s) 681, 832, 1181
PspPPI RGGWCCY 1 cut(s) 832
PsuI RGATCY 1 cut(s) 767
RsaI GTAC 7 cut(s) 105, 284, 470, 647, 887, 1134, 1162
RsaNI GTAC 7 cut(s) 104, 283, 469, 646, 886, 1133, 1161
RseI CAYNNNNRTG 2 cut(s) 482, 989
SacI GAGCTC 1 cut(s) 802
SaqAI TTAA 9 cut(s) 50, 99, 126, 141, 150, 222, 864, 1023, 1197
SatI GCNGC 1 cut(s) 122
Sau3AI GATC 4 cut(s) 208, 579, 658, 767
Sau96I GGNCC 3 cut(s) 681, 832, 1181
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 6 cut(s) 92, 260, 639, 894, 1137, 1185
SduI GDGCHC 2 cut(s) 338, 802
SfaNI GCATC 1 cut(s) 698
SfcI CTRYAG 1 cut(s) 759
SinI GGWCC 3 cut(s) 681, 832, 1181
SmiMI CAYNNNNRTG 2 cut(s) 482, 989
SmlI CTYRAG 1 cut(s) 309
SmoI CTYRAG 1 cut(s) 309
SnaBI TACGTA 1 cut(s) 282
SpeI ACTAGT 2 cut(s) 599, 805
Sse9I AATT 5 cut(s) 96, 171, 454, 907, 1117
SsiI CCGC 3 cut(s) 23, 726, 780
SspI AATATT 1 cut(s) 1048
SspMI CTAG 6 cut(s) 192, 447, 600, 663, 806, 914
SstI GAGCTC 1 cut(s) 802
StyD4I CCNGG 6 cut(s) 90, 258, 637, 892, 1135, 1183
TaaI ACNGT 3 cut(s) 48, 650, 760
TaiI ACGT 3 cut(s) 284, 777, 1197
TaqI TCGA 1 cut(s) 518
TasI AATT 5 cut(s) 96, 171, 454, 907, 1117
TatI WGTACW 1 cut(s) 103
TfiI GAWTC 1 cut(s) 418
Tru1I TTAA 9 cut(s) 50, 99, 126, 141, 150, 222, 864, 1023, 1197
Tru9I TTAA 9 cut(s) 50, 99, 126, 141, 150, 222, 864, 1023, 1197
TscAI CASTG 3 cut(s) 51, 763, 973
TseFI GTSAC 3 cut(s) 272, 567, 783
TseI GCWGC 1 cut(s) 121
Tsp45I GTSAC 3 cut(s) 272, 567, 783
TspDTI ATGAA 2 cut(s) 74, 466
TspGWI ACGGA 3 cut(s) 177, 507, 810
TspRI CASTG 3 cut(s) 51, 763, 973
VpaK11BI GGWCC 3 cut(s) 681, 832, 1181
VspI ATTAAT 1 cut(s) 864
XspI CTAG 6 cut(s) 192, 447, 600, 663, 806, 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.