Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004413

Physical Location & Seq

Genomic Coordinates Reverse (-)

56911185 .. 56915794

Gene Structure 4610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G034580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGCTACTTCACTTGCATGTTCAGTATGTTTATTGTTTTGGCCATTCATTTCATAATTTCCACAAAAGTAATAGTTATGAAAGCCAAGTTAATCATCTACTCGAATTCCATTTTTTCCCACCTTACACCTCTTTCACTAGTGACAGCGGTGATGTTATAGATTGTGTTGAGATTTACAAACAACCTGCTTTTGACCATCCCCTTCTCAGCAATCACACTATAGAGATGGAACCCAGTTCAACTCCAAGTGGAGTAAAACCAATAAACAACCAAGCCAAGCTTATTCAAGATTGGTTCAAGAATGGACAATGCCCTGACGGAACGATTCCCATCATTAGGCCACAAAGATATGATTATAATTGGAGAGCCCCAAGGAAGCTTGATAACAACTTTGGTGAGAATCCTTATGAAAATCATGAGCTCAGATTTGGGTTTGTCTCTGGTGCAGGCGAACAACTGAACACTATCGAAGCAGGGTGGATCAGGGACAATTACAATAGCACCGGTTGCTACAATCTTGACTGCCCTGGTTTCGTGCAAACCACCCGTAAATATGCAGTTGGTGCTGTTATACCACGTGTTTCCAGCTACAATGGGCCACAATGTTCGTTAGTTTTCACCATAGTCAAGGCGGTGCCGAGTGGCAATTGGTGGCTCCAAATTCAAGGTGAGTACATAGGTTATTGGCCTGGCTCCATTTTTACAACACTGTCTGATCACTCTACAAGAATAACCTGGGGTGGGGAGATTGGCACTTCTACACCACATGGTCGTCACACACAAACTGAAATGGGCCGTGGCCATTTCCCTCATGAAGGCTATGGAAAAGCGAGTTATTTTTACCATGTTCAGTATGCGGACCAACCTGGCTCTTTCAAAGATGCTACAAGTCTCATCCCTTACGCAACAAAGCCTTTATTGGAAGGTACTTCTTATGGAACTAGTTTCTTTTATGGAGGTCCTGGATACTCCAGTTCTTGTCAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

329

Amino Acids

37.15

Weight (kDa)

6.22

Isoelectric Point (pI)

24.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Neprosin_AP	PF14365	44 - 118	1.9e-24	Neprosin activation peptide
Neprosin	PF03080	158 - 321	1.1e-47	Neprosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17750 AT2G44220 AT2G44240
fragaria_vesca	FvH4_6g32790
malus_domestica	MD09G1198100.v1.1
prunus_persica	Prupe.3G054100_v2.0.a1 Prupe.3G054200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0141911 RchiOBHm_Chr2g0141931 RchiOBHm_Chr2g0141971
rosa_laevigata	RLG00000019942
rosa_multiflora	Rmu_co8265735.1_g000001 Rmu_co8330971.1_g000001 Rmu_sc0001287.1_g000036 Rmu_sc0004757.1_g000021 Rmu_sc0009946.1_g000003 Rmu_sc0009946.1_g000009
rosa_roxburghii	Rroxscaffold_2G00103690 Rroxscaffold_2G00103720
rosa_rugosa	Rorug02G0369200 Rorug02G0369300 Rorug02G0369400
rosa_samantha	Rh2AG421400 Rh2AG421600 Rh2AG421700 Rh2AG422100 Rh2BG431900 Rh2CG408700 Rh2CG408900 Rh2DG441900
rosa_wichuraiana	Rw2G034570 Rw2G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	357
Acc36I	ACCTGC	1 cut(s)	193
AccB1I	GGYRCC	1 cut(s)	634
AciI	CCGC	3 cut(s)	147, 632, 857
AclWI	GGATC	1 cut(s)	488
AcoI	YGGCCR	2 cut(s)	40, 799
AcsI	RAATTY	2 cut(s)	104, 660
AcvI	CACGTG	1 cut(s)	578
AfaI	GTAC	2 cut(s)	674, 928
AfiI	CCNNNNNNNGG	3 cut(s)	336, 741, 815
AflIII	ACRYGT	1 cut(s)	577
AgeI	ACCGGT	1 cut(s)	503
AgsI	TTSAA	5 cut(s)	240, 287, 298, 665, 877
AhlI	ACTAGT	2 cut(s)	137, 941
AjnI	CCWGG	5 cut(s)	526, 688, 734, 865, 961
AluBI	AGCT	4 cut(s)	280, 379, 421, 588
AluI	AGCT	4 cut(s)	280, 379, 421, 588
Alw21I	GWGCWC	1 cut(s)	423
Alw26I	GTCTC	2 cut(s)	442, 896
AlwI	GGATC	1 cut(s)	488
AoxI	GGCC	6 cut(s)	40, 338, 596, 686, 793, 799
ApoI	RAATTY	2 cut(s)	104, 660
AsiGI	ACCGGT	1 cut(s)	503
AspS9I	GGNCC	4 cut(s)	596, 793, 859, 959
AsuHPI	GGTGA	4 cut(s)	161, 407, 610, 680
AvaII	GGWCC	2 cut(s)	859, 959
BaeI	ACNNNNGTAYC	1 cut(s)	958
BalI	TGGCCA	2 cut(s)	42, 801
BanI	GGYRCC	1 cut(s)	634
BanII	GRGCYC	2 cut(s)	370, 423
BbrPI	CACGTG	1 cut(s)	578
Bbv12I	GWGCWC	1 cut(s)	423
BccI	CCATC	3 cut(s)	204, 220, 338
BceAI	ACGGC	1 cut(s)	780
BciT130I	CCWGG	5 cut(s)	528, 690, 736, 867, 963
BciVI	GTATCC	1 cut(s)	959
BclI	TGATCA	1 cut(s)	715
BcoDI	GTCTC	2 cut(s)	442, 896
BcuI	ACTAGT	2 cut(s)	137, 941
BfaI	CTAG	2 cut(s)	138, 942
BfmI	CTRYAG	1 cut(s)	219
BfuAI	ACCTGC	1 cut(s)	193
BfuI	GTATCC	1 cut(s)	959
Bme1390I	CCNGG	5 cut(s)	528, 690, 736, 867, 963
Bme18I	GGWCC	2 cut(s)	859, 959
BmgT120I	GGNCC	4 cut(s)	596, 793, 859, 959
BmiI	GGNNCC	4 cut(s)	231, 636, 656, 694
BmrFI	CCNGG	5 cut(s)	528, 690, 736, 867, 963
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	871
BmuI	ACTGGG	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	955
BsaAI	YACGTR	1 cut(s)	578
BsaBI	GATNNNNATC	1 cut(s)	329
BsaJI	CCNNGG	4 cut(s)	371, 526, 735, 796
BsaWI	WCCGGW	1 cut(s)	503
Bsc4I	CCNNNNNNNGG	3 cut(s)	336, 741, 815
Bse118I	RCCGGY	1 cut(s)	503
Bse1I	ACTGG	2 cut(s)	234, 972
Bse8I	GATNNNNATC	1 cut(s)	329
BseBI	CCWGG	5 cut(s)	528, 690, 736, 867, 963
BseDI	CCNNGG	4 cut(s)	371, 526, 735, 796
BseGI	GGATG	2 cut(s)	196, 894
BseJI	GATNNNNATC	1 cut(s)	329
BseLI	CCNNNNNNNGG	3 cut(s)	336, 741, 815
BseMII	CTCAG	2 cut(s)	220, 436
BseNI	ACTGG	2 cut(s)	234, 972
BsgI	GTGCAG	1 cut(s)	465
BshFI	GGCC	6 cut(s)	42, 340, 598, 688, 795, 801
BshNI	GGYRCC	1 cut(s)	634
BshTI	ACCGGT	1 cut(s)	503
BsiHKAI	GWGCWC	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	504
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	3 cut(s)	336, 741, 815
BsmAI	GTCTC	2 cut(s)	442, 896
BsmFI	GGGAC	1 cut(s)	500
BsnI	GGCC	6 cut(s)	42, 340, 598, 688, 795, 801
Bsp1286I	GDGCHC	2 cut(s)	370, 423
Bsp143I	GATC	2 cut(s)	480, 715
BspACI	CCGC	3 cut(s)	147, 632, 857
BspANI	GGCC	6 cut(s)	42, 340, 598, 688, 795, 801
BspCNI	CTCAG	2 cut(s)	219, 435
BspHI	TCATGA	2 cut(s)	415, 811
BspLI	GGNNCC	4 cut(s)	231, 636, 656, 694
BspMI	ACCTGC	1 cut(s)	193
BspPI	GGATC	1 cut(s)	488
BspT107I	GGYRCC	1 cut(s)	634
BsrFI	RCCGGY	1 cut(s)	503
BsrI	ACTGG	2 cut(s)	234, 972
BssAI	RCCGGY	1 cut(s)	503
BssECI	CCNNGG	4 cut(s)	371, 526, 735, 796
BssMI	GATC	2 cut(s)	480, 715
BssT1I	CCWWGG	1 cut(s)	371
Bst2UI	CCWGG	5 cut(s)	528, 690, 736, 867, 963
Bst4CI	ACNGT	1 cut(s)	711
BstAPI	GCANNNNNTGC	2 cut(s)	507, 563
BstBAI	YACGTR	1 cut(s)	578
BstC8I	GCNNGC	1 cut(s)	448
BstDEI	CTNAG	2 cut(s)	206, 422
BstDSI	CCRYGG	1 cut(s)	796
BstENI	CCTNNNNNAGG	1 cut(s)	813
BstF5I	GGATG	2 cut(s)	196, 894
BstKTI	GATC	2 cut(s)	483, 718
BstMAI	GTCTC	2 cut(s)	442, 896
BstMBI	GATC	2 cut(s)	480, 715
BstMWI	GCNNNNNNNGC	2 cut(s)	507, 563
BstNI	CCWGG	5 cut(s)	528, 690, 736, 867, 963
BstNSI	RCATGY	1 cut(s)	20
BstSCI	CCNGG	5 cut(s)	526, 688, 734, 865, 961
BstSFI	CTRYAG	1 cut(s)	219
BsuI	GTATCC	1 cut(s)	959
BsuRI	GGCC	6 cut(s)	42, 340, 598, 688, 795, 801
BtgI	CCRYGG	1 cut(s)	796
BtsCI	GGATG	2 cut(s)	196, 894
BtsIMutI	CAGTG	1 cut(s)	707
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	448
CciI	TCATGA	2 cut(s)	415, 811
Cfr10I	RCCGGY	1 cut(s)	503
Cfr13I	GGNCC	4 cut(s)	596, 793, 859, 959
Csp6I	GTAC	2 cut(s)	673, 927
CspAI	ACCGGT	1 cut(s)	503
CviAII	CATG	5 cut(s)	17, 416, 767, 812, 845
CviQI	GTAC	2 cut(s)	673, 927
DdeI	CTNAG	2 cut(s)	206, 422
DpnI	GATC	2 cut(s)	482, 717
DpnII	GATC	2 cut(s)	480, 715
EaeI	YGGCCR	2 cut(s)	40, 799
Ecl136II	GAGCTC	1 cut(s)	421
Eco130I	CCWWGG	1 cut(s)	371
Eco24I	GRGCYC	2 cut(s)	370, 423
Eco47I	GGWCC	2 cut(s)	859, 959
Eco53kI	GAGCTC	1 cut(s)	421
Eco72I	CACGTG	1 cut(s)	578
EcoICRI	GAGCTC	1 cut(s)	421
EcoNI	CCTNNNNNAGG	1 cut(s)	813
EcoO109I	RGGNCCY	1 cut(s)	959
EcoRI	GAATTC	1 cut(s)	104
EcoRII	CCWGG	5 cut(s)	526, 688, 734, 865, 961
EcoT14I	CCWWGG	1 cut(s)	371
EcoT38I	GRGCYC	2 cut(s)	370, 423
ErhI	CCWWGG	1 cut(s)	371
FaeI	CATG	5 cut(s)	20, 419, 770, 815, 848
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	5 cut(s)	16, 415, 766, 811, 844
FbaI	TGATCA	1 cut(s)	715
FokI	GGATG	2 cut(s)	183, 881
FriOI	GRGCYC	2 cut(s)	370, 423
FspBI	CTAG	2 cut(s)	138, 942
GsuI	CTGGAG	1 cut(s)	955
HaeIII	GGCC	6 cut(s)	42, 340, 598, 688, 795, 801
HapII	CCGG	1 cut(s)	504
Hin1II	CATG	5 cut(s)	20, 419, 770, 815, 848
HindIII	AAGCTT	2 cut(s)	278, 377
HinfI	GANTC	2 cut(s)	325, 400
HpaII	CCGG	1 cut(s)	504
HphI	GGTGA	4 cut(s)	161, 407, 610, 680
Hpy188I	TCNGA	2 cut(s)	425, 715
Hpy188III	TCNNGA	5 cut(s)	287, 298, 416, 518, 812
HpyAV	CCTTC	3 cut(s)	212, 809, 917
HpyCH4III	ACNGT	1 cut(s)	711
HpyCH4IV	ACGT	1 cut(s)	577
HpyCH4V	TGCA	4 cut(s)	16, 446, 538, 557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	507, 563
HpyF3I	CTNAG	2 cut(s)	206, 422
HpySE526I	ACGT	1 cut(s)	577
Hsp92II	CATG	5 cut(s)	20, 419, 770, 815, 848
Ksp22I	TGATCA	1 cut(s)	715
Kzo9I	GATC	2 cut(s)	480, 715
LmnI	GCTCC	2 cut(s)	660, 698
LweI	GCATC	1 cut(s)	871
MaeI	CTAG	2 cut(s)	138, 942
MaeII	ACGT	1 cut(s)	577
MaeIII	GTNAC	2 cut(s)	140, 773
MalI	GATC	2 cut(s)	482, 717
MboI	GATC	2 cut(s)	480, 715
MfeI	CAATTG	1 cut(s)	646
MhlI	GDGCHC	2 cut(s)	370, 423
MlsI	TGGCCA	2 cut(s)	42, 801
MluCI	AATT	6 cut(s)	55, 104, 358, 490, 646, 660
MluNI	TGGCCA	2 cut(s)	42, 801
MnlI	CCTC	3 cut(s)	139, 819, 950
Mox20I	TGGCCA	2 cut(s)	42, 801
MscI	TGGCCA	2 cut(s)	42, 801
MseI	TTAA	1 cut(s)	90
MslI	CAYNNNNRTG	1 cut(s)	15
Msp20I	TGGCCA	2 cut(s)	42, 801
MspA1I	CMGCKG	1 cut(s)	147
MspI	CCGG	1 cut(s)	504
MspR9I	CCNGG	5 cut(s)	528, 690, 736, 867, 963
MunI	CAATTG	1 cut(s)	646
MvaI	CCWGG	5 cut(s)	528, 690, 736, 867, 963
MwoI	GCNNNNNNNGC	2 cut(s)	507, 563
NdeII	GATC	2 cut(s)	480, 715
NlaIII	CATG	5 cut(s)	20, 419, 770, 815, 848
NlaIV	GGNNCC	4 cut(s)	231, 636, 656, 694
NmeAIII	GCCGAG	1 cut(s)	663
NmuCI	GTSAC	2 cut(s)	140, 773
NspI	RCATGY	1 cut(s)	20
PagI	TCATGA	2 cut(s)	415, 811
PfeI	GAWTC	2 cut(s)	325, 400
PfoI	TCCNGGA	1 cut(s)	961
PinAI	ACCGGT	1 cut(s)	503
PmaCI	CACGTG	1 cut(s)	578
PmlI	CACGTG	1 cut(s)	578
Ppu21I	YACGTR	1 cut(s)	578
PpuMI	RGGWCCY	1 cut(s)	959
PsiI	TTATAA	1 cut(s)	357
Psp124BI	GAGCTC	1 cut(s)	423
Psp5II	RGGWCCY	1 cut(s)	959
Psp6I	CCWGG	5 cut(s)	526, 688, 734, 865, 961
PspCI	CACGTG	1 cut(s)	578
PspGI	CCWGG	5 cut(s)	526, 688, 734, 865, 961
PspN4I	GGNNCC	4 cut(s)	231, 636, 656, 694
PspPI	GGNCC	4 cut(s)	596, 793, 859, 959
PspPPI	RGGWCCY	1 cut(s)	959
RsaI	GTAC	2 cut(s)	674, 928
RsaNI	GTAC	2 cut(s)	673, 927
RseI	CAYNNNNRTG	1 cut(s)	15
SacI	GAGCTC	1 cut(s)	423
SaqAI	TTAA	1 cut(s)	90
Sau3AI	GATC	2 cut(s)	480, 715
Sau96I	GGNCC	4 cut(s)	596, 793, 859, 959
ScrFI	CCNGG	5 cut(s)	528, 690, 736, 867, 963
SduI	GDGCHC	2 cut(s)	370, 423
SfaNI	GCATC	1 cut(s)	871
SfcI	CTRYAG	1 cut(s)	219
SinI	GGWCC	2 cut(s)	859, 959
SmiMI	CAYNNNNRTG	1 cut(s)	15
SpeI	ACTAGT	2 cut(s)	137, 941
Sse9I	AATT	6 cut(s)	55, 104, 358, 490, 646, 660
SsiI	CCGC	3 cut(s)	147, 632, 857
SspMI	CTAG	2 cut(s)	138, 942
SstI	GAGCTC	1 cut(s)	423
StyD4I	CCNGG	5 cut(s)	526, 688, 734, 865, 961
StyI	CCWWGG	1 cut(s)	371
TaaI	ACNGT	1 cut(s)	711
TaiI	ACGT	1 cut(s)	580
TaqI	TCGA	2 cut(s)	102, 468
TasI	AATT	6 cut(s)	55, 104, 358, 490, 646, 660
TatI	WGTACW	1 cut(s)	672
TfiI	GAWTC	2 cut(s)	325, 400
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	1 cut(s)	714
TseFI	GTSAC	2 cut(s)	140, 773
Tsp45I	GTSAC	2 cut(s)	140, 773
TspDTI	ATGAA	5 cut(s)	36, 41, 93, 423, 828
TspGWI	ACGGA	1 cut(s)	333
TspRI	CASTG	1 cut(s)	714
VpaK11BI	GGWCC	2 cut(s)	859, 959
XagI	CCTNNNNNAGG	1 cut(s)	813
XapI	RAATTY	2 cut(s)	104, 660
XceI	RCATGY	1 cut(s)	20
XspI	CTAG	2 cut(s)	138, 942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.