Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004413

Physical Location & Seq

Genomic Coordinates Reverse (-)

62577926 .. 62580671

Gene Structure 2746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG421600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGTGACGACTTACTTGCCAAGACAAGCACTGGGCGATGAAGGTAATGTGATAGATTGCATTGACATCTATAAGCAGCCTGCTCTTAGTCATCCACTTCTCAAAAATCATACTATACAGCTGAATCCGCCAAGTCCGTATCCAAGTGGAATTAATGAAACAGAAAGTTCTCATCAAGATGACGAGCAAGTACTGAAATCTTGGTTATTGAATGAAGAGTGCCCAGAAGGAACAATCCCTATTCTTCGAACTCAGGCTTTTAATAGTTCTTTTCCTAAATCTAGCCCACCTTTCAATGGAAGCAACGTTGAGTTCACGCCTGCATCTGGTCATGAGTACGCCGTAGCTAGTCTTTCAGGTGGCCAATATTACGGAGCACACGCATCTGTGAACGTATGGAGCCCTTTATCAGTTTTTGAGGAGAATAGTATATCCCAGATATGGGTAGCGGGAGGTCATGAACAAGCACGAAGTACTGTTGAAGCTGGGTGGAAAATTAATTCGGCTGACCGGCAAACAAGGTTCTTCATATTCTGGACAGGCCATGGTTACCAAGATGGTTGCTACAATCTTCAATGTCCTGGTTTCGTCCAAGTAAACAGAAAGTTTGCCCTAGGTTTACCCATTAAACCTGTTTCAATCTACAACGGCAAACAATTTGAAATATTCATAAGTATATACAAGCACCAATCGACTGGACAGTGGTGGGTTTTGTTGCAAGATCAAGCATTAGGATACTGGCCAGACAAAATCTTACCAAGTCTGAGAGGCAGTGCTGACGCGGTTAGCTGGGGTGGTGAAATTTACAATTCAGAAATTGGAGGTCGTCACACATCAACTCAGATGGGGAGTGGTCATTTCCCGAGTGAAGGCTATGGCAAAGCAAGCTATTTTCGAAATATTCAATACTTGGCCAACTCTGGAAAGTTTGTAGATGCACAAGGGCTTATACCCTATGTCACAAAGCCTCCATGCTACAACCTTATTATGAAAAATAAAGCCCCAGGATTTGGAAACCATTTCTATTATGGGGGATTTGGATATTCAACAAGATGCCCTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

354

Amino Acids

39.33

Weight (kDa)

6.59

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Neprosin_AP	PF14365	14 - 86	5.7e-21	Neprosin activation peptide
Neprosin	PF03080	141 - 345	1.3e-69	Neprosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17750 AT2G44220 AT2G44240
fragaria_vesca	FvH4_6g32790
malus_domestica	MD09G1198100.v1.1
prunus_persica	Prupe.3G054100_v2.0.a1 Prupe.3G054200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0141911 RchiOBHm_Chr2g0141931 RchiOBHm_Chr2g0141971
rosa_laevigata	RLG00000019942
rosa_multiflora	Rmu_co8265735.1_g000001 Rmu_co8330971.1_g000001 Rmu_sc0001287.1_g000036 Rmu_sc0004757.1_g000021 Rmu_sc0009946.1_g000003 Rmu_sc0009946.1_g000009
rosa_roxburghii	Rroxscaffold_2G00103690 Rroxscaffold_2G00103720
rosa_rugosa	Rorug02G0369200 Rorug02G0369300 Rorug02G0369400
rosa_samantha	Rh2AG421400 Rh2AG421600 Rh2AG421700 Rh2AG422100 Rh2BG431900 Rh2CG408700 Rh2CG408900 Rh2DG441900
rosa_wichuraiana	Rw2G034570 Rw2G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1010
AccII	CGCG	1 cut(s)	782
AciI	CCGC	3 cut(s)	128, 449, 782
AclI	AACGTT	1 cut(s)	306
AcoI	YGGCCR	3 cut(s)	361, 740, 912
AcsI	RAATTY	1 cut(s)	801
AfaI	GTAC	3 cut(s)	192, 338, 475
AfiI	CCNNNNNNNGG	6 cut(s)	296, 326, 441, 442, 869, 1010
AgsI	TTSAA	8 cut(s)	211, 295, 482, 575, 639, 662, 905, 1047
AjnI	CCWGG	2 cut(s)	580, 1003
AluBI	AGCT	5 cut(s)	121, 347, 485, 789, 888
AluI	AGCT	5 cut(s)	121, 347, 485, 789, 888
Alw21I	GWGCWC	1 cut(s)	379
Ama87I	CYCGRG	1 cut(s)	862
AoxI	GGCC	4 cut(s)	361, 541, 740, 912
ApeKI	GCWGC	1 cut(s)	76
ApoI	RAATTY	1 cut(s)	801
AseI	ATTAAT	2 cut(s)	153, 498
AspA2I	CCTAGG	1 cut(s)	613
AsuHPI	GGTGA	2 cut(s)	16, 809
AsuII	TTCGAA	2 cut(s)	247, 895
AvaI	CYCGRG	1 cut(s)	862
AvrII	CCTAGG	1 cut(s)	613
BaeGI	GKGCMC	1 cut(s)	224
BalI	TGGCCA	3 cut(s)	363, 742, 914
BanII	GRGCYC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	2 cut(s)	551, 838
BceAI	ACGGC	2 cut(s)	326, 664
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	2 cut(s)	582, 1005
BciVI	GTATCC	2 cut(s)	150, 728
BfaI	CTAG	3 cut(s)	282, 348, 614
BfuI	GTATCC	2 cut(s)	150, 728
BisI	GCNGC	1 cut(s)	77
BlnI	CCTAGG	1 cut(s)	613
BlsI	GCNGC	1 cut(s)	78
BmcAI	AGTACT	2 cut(s)	192, 475
Bme1390I	CCNGG	2 cut(s)	582, 1005
BmeT110I	CYCGRG	1 cut(s)	862
BmiI	GGNNCC	1 cut(s)	401
BmrFI	CCNGG	2 cut(s)	582, 1005
BmrI	ACTGGG	1 cut(s)	41
BmsI	GCATC	4 cut(s)	332, 392, 925, 1043
BmuI	ACTGGG	1 cut(s)	41
Bpu14I	TTCGAA	2 cut(s)	247, 895
BsaJI	CCNNGG	3 cut(s)	544, 613, 1003
BsaXI	ACNNNNNCTCC	2 cut(s)	952, 982
Bsc4I	CCNNNNNNNGG	6 cut(s)	296, 326, 441, 442, 869, 1010
Bse118I	RCCGGY	1 cut(s)	510
Bse1I	ACTGG	3 cut(s)	36, 700, 743
BseBI	CCWGG	2 cut(s)	582, 1005
BseDI	CCNNGG	3 cut(s)	544, 613, 1003
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	6 cut(s)	296, 326, 441, 442, 869, 1010
BseMII	CTCAG	3 cut(s)	266, 755, 854
BseNI	ACTGG	3 cut(s)	36, 700, 743
BseRI	GAGGAG	1 cut(s)	434
BseSI	GKGCMC	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	88
BseYI	CCCAGC	2 cut(s)	485, 789
Bsh1236I	CGCG	1 cut(s)	782
BshFI	GGCC	4 cut(s)	363, 543, 742, 914
BsiHKAI	GWGCWC	1 cut(s)	379
BsiHKCI	CYCGRG	1 cut(s)	862
BsiSI	CCGG	1 cut(s)	511
BslI	CCNNNNNNNGG	6 cut(s)	296, 326, 441, 442, 869, 1010
BsnI	GGCC	4 cut(s)	363, 543, 742, 914
BsoBI	CYCGRG	1 cut(s)	862
Bsp119I	TTCGAA	2 cut(s)	247, 895
Bsp1286I	GDGCHC	3 cut(s)	224, 379, 404
Bsp143I	GATC	1 cut(s)	721
Bsp19I	CCATGG	1 cut(s)	544
BspACI	CCGC	3 cut(s)	128, 449, 782
BspANI	GGCC	4 cut(s)	363, 543, 742, 914
BspCNI	CTCAG	3 cut(s)	265, 756, 853
BspFNI	CGCG	1 cut(s)	782
BspHI	TCATGA	2 cut(s)	331, 457
BspLI	GGNNCC	1 cut(s)	401
BspT104I	TTCGAA	2 cut(s)	247, 895
BsrFI	RCCGGY	1 cut(s)	510
BsrI	ACTGG	3 cut(s)	36, 700, 743
BssAI	RCCGGY	1 cut(s)	510
BssECI	CCNNGG	3 cut(s)	544, 613, 1003
BssMI	GATC	1 cut(s)	721
BssT1I	CCWWGG	2 cut(s)	544, 613
Bst2UI	CCWGG	2 cut(s)	582, 1005
Bst4CI	ACNGT	2 cut(s)	478, 702
Bst6I	CTCTTC	1 cut(s)	210
BstBI	TTCGAA	2 cut(s)	247, 895
BstC8I	GCNNGC	3 cut(s)	81, 321, 886
BstDEI	CTNAG	4 cut(s)	86, 252, 764, 840
BstDSI	CCRYGG	1 cut(s)	544
BstEII	GGTNACC	1 cut(s)	548
BstF5I	GGATG	1 cut(s)	91
BstFNI	CGCG	1 cut(s)	782
BstKTI	GATC	1 cut(s)	724
BstMBI	GATC	1 cut(s)	721
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 885
BstNI	CCWGG	2 cut(s)	582, 1005
BstPI	GGTNACC	1 cut(s)	548
BstSCI	CCNGG	2 cut(s)	580, 1003
BstSLI	GKGCMC	1 cut(s)	224
BstUI	CGCG	1 cut(s)	782
BstV1I	GCAGC	1 cut(s)	88
BstXI	CCANNNNNNTGG	1 cut(s)	695
BsuI	GTATCC	2 cut(s)	150, 728
BsuRI	GGCC	4 cut(s)	363, 543, 742, 914
BtgI	CCRYGG	1 cut(s)	544
BtgZI	GCGATG	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	91
BtsI	GCAGTG	1 cut(s)	778
BtsIMutI	CAGTG	3 cut(s)	29, 707, 778
Cac8I	GCNNGC	3 cut(s)	81, 321, 886
CciI	TCATGA	2 cut(s)	331, 457
Cfr10I	RCCGGY	1 cut(s)	510
CseI	GACGC	1 cut(s)	788
Csp6I	GTAC	3 cut(s)	191, 337, 474
CviAII	CATG	4 cut(s)	332, 458, 545, 972
CviQI	GTAC	3 cut(s)	191, 337, 474
DdeI	CTNAG	4 cut(s)	86, 252, 764, 840
DpnI	GATC	1 cut(s)	723
DpnII	GATC	1 cut(s)	721
EaeI	YGGCCR	3 cut(s)	361, 740, 912
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
EciI	GGCGGA	1 cut(s)	117
Eco130I	CCWWGG	2 cut(s)	544, 613
Eco24I	GRGCYC	1 cut(s)	404
Eco88I	CYCGRG	1 cut(s)	862
Eco91I	GGTNACC	1 cut(s)	548
EcoO65I	GGTNACC	1 cut(s)	548
EcoRII	CCWGG	2 cut(s)	580, 1003
EcoT14I	CCWWGG	2 cut(s)	544, 613
EcoT38I	GRGCYC	1 cut(s)	404
ErhI	CCWWGG	2 cut(s)	544, 613
FaeI	CATG	4 cut(s)	335, 461, 548, 975
FatI	CATG	4 cut(s)	331, 457, 544, 971
FauI	CCCGC	1 cut(s)	442
Fnu4HI	GCNGC	1 cut(s)	77
FokI	GGATG	1 cut(s)	78
FriOI	GRGCYC	1 cut(s)	404
Fsp4HI	GCNGC	1 cut(s)	77
FspBI	CTAG	3 cut(s)	282, 348, 614
GluI	GCNGC	1 cut(s)	77
GsaI	CCCAGC	2 cut(s)	489, 793
HaeIII	GGCC	4 cut(s)	363, 543, 742, 914
HapII	CCGG	1 cut(s)	511
HgaI	GACGC	1 cut(s)	788
Hin1II	CATG	4 cut(s)	335, 461, 548, 975
HinfI	GANTC	1 cut(s)	124
HpaII	CCGG	1 cut(s)	511
HphI	GGTGA	2 cut(s)	16, 809
Hpy166II	GTNNAC	4 cut(s)	315, 391, 598, 620
Hpy188I	TCNGA	3 cut(s)	765, 814, 843
Hpy188III	TCNNGA	6 cut(s)	176, 332, 458, 535, 862, 921
Hpy8I	GTNNAC	4 cut(s)	315, 391, 598, 620
HpyAV	CCTTC	3 cut(s)	35, 221, 863
HpyCH4III	ACNGT	2 cut(s)	478, 702
HpyCH4IV	ACGT	2 cut(s)	306, 393
HpyCH4V	TGCA	4 cut(s)	60, 323, 718, 938
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 885
HpyF3I	CTNAG	4 cut(s)	86, 252, 764, 840
HpySE526I	ACGT	2 cut(s)	306, 393
Hsp92II	CATG	4 cut(s)	335, 461, 548, 975
Kzo9I	GATC	1 cut(s)	721
LmnI	GCTCC	2 cut(s)	374, 399
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	4 cut(s)	332, 392, 925, 1043
MaeI	CTAG	3 cut(s)	282, 348, 614
MaeII	ACGT	2 cut(s)	306, 393
MaeIII	GTNAC	4 cut(s)	4, 548, 827, 958
MalI	GATC	1 cut(s)	723
MboI	GATC	1 cut(s)	721
MboII	GAAGA	4 cut(s)	227, 236, 517, 563
MhlI	GDGCHC	3 cut(s)	224, 379, 404
MlsI	TGGCCA	3 cut(s)	363, 742, 914
MluCI	AATT	7 cut(s)	150, 495, 499, 656, 801, 808, 816
MluNI	TGGCCA	3 cut(s)	363, 742, 914
MnlI	CCTC	5 cut(s)	412, 446, 761, 815, 978
Mox20I	TGGCCA	3 cut(s)	363, 742, 914
MscI	TGGCCA	3 cut(s)	363, 742, 914
MseI	TTAA	4 cut(s)	153, 261, 498, 627
MslI	CAYNNNNRTG	1 cut(s)	177
Msp20I	TGGCCA	3 cut(s)	363, 742, 914
MspA1I	CMGCKG	1 cut(s)	121
MspI	CCGG	1 cut(s)	511
MspR9I	CCNGG	2 cut(s)	582, 1005
MvaI	CCWGG	2 cut(s)	582, 1005
MvnI	CGCG	1 cut(s)	782
MwoI	GCNNNNNNNGC	2 cut(s)	127, 885
NcoI	CCATGG	1 cut(s)	544
NdeII	GATC	1 cut(s)	721
NlaIII	CATG	4 cut(s)	335, 461, 548, 975
NlaIV	GGNNCC	1 cut(s)	401
NmuCI	GTSAC	3 cut(s)	4, 827, 958
NspV	TTCGAA	2 cut(s)	247, 895
PagI	TCATGA	2 cut(s)	331, 457
PfeI	GAWTC	1 cut(s)	124
PflMI	CCANNNNNTGG	1 cut(s)	1010
PkrI	GCNGC	1 cut(s)	78
PshBI	ATTAAT	2 cut(s)	153, 498
Psp1406I	AACGTT	1 cut(s)	306
Psp6I	CCWGG	2 cut(s)	580, 1003
PspEI	GGTNACC	1 cut(s)	548
PspFI	CCCAGC	2 cut(s)	485, 789
PspGI	CCWGG	2 cut(s)	580, 1003
PspN4I	GGNNCC	1 cut(s)	401
PvuII	CAGCTG	1 cut(s)	121
RsaI	GTAC	3 cut(s)	192, 338, 475
RsaNI	GTAC	3 cut(s)	191, 337, 474
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	4 cut(s)	153, 261, 498, 627
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	1 cut(s)	721
ScaI	AGTACT	2 cut(s)	192, 475
ScrFI	CCNGG	2 cut(s)	582, 1005
SduI	GDGCHC	3 cut(s)	224, 379, 404
SfaNI	GCATC	4 cut(s)	332, 392, 925, 1043
SfuI	TTCGAA	2 cut(s)	247, 895
SmiMI	CAYNNNNRTG	1 cut(s)	177
Sse9I	AATT	7 cut(s)	150, 495, 499, 656, 801, 808, 816
SsiI	CCGC	3 cut(s)	128, 449, 782
SspI	AATATT	3 cut(s)	368, 666, 901
SspMI	CTAG	3 cut(s)	282, 348, 614
StyD4I	CCNGG	2 cut(s)	580, 1003
StyI	CCWWGG	2 cut(s)	544, 613
TaaI	ACNGT	2 cut(s)	478, 702
TaiI	ACGT	2 cut(s)	309, 396
TaqI	TCGA	3 cut(s)	247, 692, 895
TasI	AATT	7 cut(s)	150, 495, 499, 656, 801, 808, 816
TatI	WGTACW	2 cut(s)	190, 473
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	4 cut(s)	153, 261, 498, 627
Tru9I	TTAA	4 cut(s)	153, 261, 498, 627
TscAI	CASTG	3 cut(s)	36, 707, 778
TseFI	GTSAC	3 cut(s)	4, 827, 958
TseI	GCWGC	1 cut(s)	76
Tsp45I	GTSAC	3 cut(s)	4, 827, 958
TspDTI	ATGAA	7 cut(s)	54, 171, 228, 474, 517, 658, 1004
TspGWI	ACGGA	2 cut(s)	126, 387
TspRI	CASTG	3 cut(s)	36, 707, 778
Van91I	CCANNNNNTGG	1 cut(s)	1010
VspI	ATTAAT	2 cut(s)	153, 498
XapI	RAATTY	1 cut(s)	801
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1025
XmaJI	CCTAGG	1 cut(s)	613
XspI	CTAG	3 cut(s)	282, 348, 614
ZrmI	AGTACT	2 cut(s)	192, 475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.