Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002107

Physical Location & Seq

Genomic Coordinates Forward (+)

8094614 .. 8095779

Gene Structure 1166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G18680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTTCTCAGTCTTGGTATTCCCTCTCTTACTCAATTGTTTAGTTTACTTGTTCAACGCCATTGCCATCAAACCCGAGATAACAAACTTGATCCTTGAATCAAGTTTGTTACCTATGACAGATCCAAACACCCCGGAATTTGCTGCCCATCTTATGAGAGTCTTTGTAGATTTTCGCCAGTTTGTCAATTCTTTATACATCTTCATCGCCGTCTCCTCCATCATCAACCTTTTATCCACTCTTGTCATGGTTCATGCATCGGCTCTTACTCATAAAGATGATAGCTTCGAGATCAAAGATTTTCCGATTCTGACGCTTAAATATTGGAAGGGACCTCTTGTGACCAATTTCTATATTGTTCTCTTCAGTCTTGGCTATTGGTTCCTATTCTTTATAGTCCTATTTTCTATCGTTTTCTTCTCTACAAAACTCGATTCCTTGGCAGCCAAATCTCGCGCTTTATTCATTGTATTTGCAGTCTTTGAGTCTTACTTAGCTATCGTTTGGAACTTATCTATGGTCATATCGATACTCGAGGATACTTATGGGATCCAAGCTTTGGGGAAAGCTGCAAAGATTGTTAAAGGGATGAAGCCAAAACTATTCCTCTTGAATCTTTTCTTTGGGTTATTGTCATTTGGATTAGTTCAAATCTTGCGGCTGGTCGATTGGAGTAGTTCATTCTCGGTTACCTTAACCACCGGTTTGGTCCTTATGAGTTCGGTCTTTGTGGTGAGGATGTTTCAGCTTGTGACTTACACCGTTGCTTATTTCCAATGTAAGAGCCTGCAAGGACAAGACTCGCTGAGGGATGTTGAATATACGAAATTGTCATCCACTACTCTCATGGGAGGATTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

287

Amino Acids

32.44

Weight (kDa)

8.76

Isoelectric Point (pI)

20.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18680 AT2G18690 AT2G18690
malus_domestica	MD16G1263500.v1.1
prunus_persica	Prupe.1G095700_v2.0.a1 Prupe.1G095800_v2.0.a1 Prupe.1G095900_v2.0.a1
pyrus_communis	pycom16g23240
rosa_chinensis	RchiOBHm_Chr4g0404701 RchiOBHm_Chr4g0404711 RchiOBHm_Chr4g0404721
rosa_laevigata	RLG00000008905 RLG00000008906 RLG00000008908 RLG00000008911 RLG00000008912 RLG00000008914
rosa_multiflora	Rmu_sc0001179.1_g000050 Rmu_sc0001179.1_g000051 Rmu_sc0004312.1_g000001 Rmu_sc0005685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017040 Rroxscaffold_5G00348900 Rroxscaffold_5G00348910
rosa_rugosa	Rorug04G0048900 Rorug04G0049000
rosa_samantha	Rh4AG124600 Rh4AG124700 Rh4BG118800 Rh4BG118900 Rh4BG119000 Rh4CG132800 Rh4CG132900 Rh4CG133000 Rh4DG117900 Rh4DG118000 Rh4DG118100 Rh5AG418500 Rh5BG434300 Rh5CG457500 Rh5DG447400
rosa_wichuraiana	Rw4G010090 Rw4G010100 Rw5G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	559
AccII	CGCG	1 cut(s)	456
AciI	CCGC	1 cut(s)	658
AclWI	GGATC	4 cut(s)	85, 116, 544, 557
AcsI	RAATTY	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	349
AfiI	CCNNNNNNNGG	1 cut(s)	559
AgeI	ACCGGT	1 cut(s)	701
AgsI	TTSAA	5 cut(s)	55, 98, 613, 650, 818
AluBI	AGCT	5 cut(s)	285, 497, 557, 569, 748
AluI	AGCT	5 cut(s)	285, 497, 557, 569, 748
Alw26I	GTCTC	1 cut(s)	217
AlwI	GGATC	4 cut(s)	85, 116, 544, 557
Ama87I	CYCGRG	2 cut(s)	74, 533
ApeKI	GCWGC	3 cut(s)	143, 443, 569
ApoI	RAATTY	1 cut(s)	137
AsiGI	ACCGGT	1 cut(s)	701
Asp700I	GAANNNNTTC	1 cut(s)	617
AspLEI	GCGC	1 cut(s)	458
AspS9I	GGNCC	2 cut(s)	332, 709
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	745
AvaI	CYCGRG	2 cut(s)	74, 533
AvaII	GGWCC	2 cut(s)	332, 709
BamHI	GGATCC	1 cut(s)	549
BbvCI	CCTCAGC	1 cut(s)	806
BbvI	GCAGC	3 cut(s)	130, 455, 556
BccI	CCATC	3 cut(s)	74, 156, 227
BceAI	ACGGC	1 cut(s)	194
BciVI	GTATCC	1 cut(s)	532
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	217
BfuI	GTATCC	1 cut(s)	532
BisI	GCNGC	4 cut(s)	144, 444, 570, 659
BlsI	GCNGC	4 cut(s)	145, 445, 571, 660
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	2 cut(s)	332, 709
BmeT110I	CYCGRG	2 cut(s)	74, 533
BmgT120I	GGNCC	2 cut(s)	332, 709
BmiI	GGNNCC	3 cut(s)	333, 383, 551
BmrFI	CCNGG	1 cut(s)	134
BmsI	GCATC	1 cut(s)	266
Bpu10I	CCTNAGC	1 cut(s)	806
BpuMI	CCSGG	1 cut(s)	134
Bsa29I	ATCGAT	1 cut(s)	527
BsaJI	CCNNGG	2 cut(s)	132, 438
BsaWI	WCCGGW	1 cut(s)	701
Bsc4I	CCNNNNNNNGG	1 cut(s)	559
Bse118I	RCCGGY	1 cut(s)	701
Bse1I	ACTGG	1 cut(s)	178
Bse3DI	GCAATG	1 cut(s)	60
BseCI	ATCGAT	1 cut(s)	527
BseDI	CCNNGG	2 cut(s)	132, 438
BseGI	GGATG	4 cut(s)	594, 744, 817, 833
BseLI	CCNNNNNNNGG	1 cut(s)	559
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	2 cut(s)	21, 797
BseNI	ACTGG	1 cut(s)	178
BseRI	GAGGAG	1 cut(s)	205
BseXI	GCAGC	3 cut(s)	130, 455, 556
Bsh1236I	CGCG	1 cut(s)	456
BshTI	ACCGGT	1 cut(s)	701
BshVI	ATCGAT	1 cut(s)	527
BsiHKCI	CYCGRG	2 cut(s)	74, 533
BsiSI	CCGG	2 cut(s)	134, 702
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	1 cut(s)	559
BsmAI	GTCTC	1 cut(s)	217
BsmBI	CGTCTC	1 cut(s)	217
BsmFI	GGGAC	1 cut(s)	345
BsoBI	CYCGRG	2 cut(s)	74, 533
Bsp143I	GATC	4 cut(s)	90, 121, 291, 549
BspACI	CCGC	1 cut(s)	658
BspCNI	CTCAG	2 cut(s)	20, 798
BspDI	ATCGAT	1 cut(s)	527
BspFNI	CGCG	1 cut(s)	456
BspLI	GGNNCC	3 cut(s)	333, 383, 551
BspPI	GGATC	4 cut(s)	85, 116, 544, 557
BsrDI	GCAATG	1 cut(s)	60
BsrFI	RCCGGY	1 cut(s)	701
BsrI	ACTGG	1 cut(s)	178
BssAI	RCCGGY	1 cut(s)	701
BssECI	CCNNGG	2 cut(s)	132, 438
BssMI	GATC	4 cut(s)	90, 121, 291, 549
BssT1I	CCWWGG	1 cut(s)	438
Bst4CI	ACNGT	1 cut(s)	763
Bst6I	CTCTTC	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	788
BstDEI	CTNAG	3 cut(s)	7, 493, 806
BstEII	GGTNACC	1 cut(s)	688
BstF5I	GGATG	4 cut(s)	594, 744, 817, 833
BstFNI	CGCG	1 cut(s)	456
BstHHI	GCGC	1 cut(s)	458
BstKTI	GATC	4 cut(s)	93, 124, 294, 552
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	4 cut(s)	90, 121, 291, 549
BstPI	GGTNACC	1 cut(s)	688
BstSCI	CCNGG	1 cut(s)	132
BstUI	CGCG	1 cut(s)	456
BstV1I	GCAGC	3 cut(s)	130, 455, 556
BstX2I	RGATCY	2 cut(s)	121, 549
BstXI	CCANNNNNNTGG	1 cut(s)	706
BstYI	RGATCY	2 cut(s)	121, 549
Bsu15I	ATCGAT	1 cut(s)	527
BsuI	GTATCC	1 cut(s)	532
BsuTUI	ATCGAT	1 cut(s)	527
BtgZI	GCGATG	1 cut(s)	190
BtsCI	GGATG	4 cut(s)	594, 744, 817, 833
Cac8I	GCNNGC	1 cut(s)	788
CfoI	GCGC	1 cut(s)	458
Cfr10I	RCCGGY	1 cut(s)	701
Cfr13I	GGNCC	2 cut(s)	332, 709
ClaI	ATCGAT	1 cut(s)	527
CseI	GACGC	1 cut(s)	322
CspAI	ACCGGT	1 cut(s)	701
CviAII	CATG	3 cut(s)	247, 254, 847
DdeI	CTNAG	3 cut(s)	7, 493, 806
DpnI	GATC	4 cut(s)	92, 123, 293, 551
DpnII	GATC	4 cut(s)	90, 121, 291, 549
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
Eco130I	CCWWGG	1 cut(s)	438
Eco47I	GGWCC	2 cut(s)	332, 709
Eco57I	CTGAAG	1 cut(s)	349
Eco88I	CYCGRG	2 cut(s)	74, 533
Eco91I	GGTNACC	1 cut(s)	688
EcoO109I	RGGNCCY	1 cut(s)	332
EcoO65I	GGTNACC	1 cut(s)	688
EcoT14I	CCWWGG	1 cut(s)	438
EcoT22I	ATGCAT	1 cut(s)	259
ErhI	CCWWGG	1 cut(s)	438
Esp3I	CGTCTC	1 cut(s)	217
FaeI	CATG	3 cut(s)	250, 257, 850
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	3 cut(s)	246, 253, 846
Fnu4HI	GCNGC	4 cut(s)	144, 444, 570, 659
FokI	GGATG	4 cut(s)	601, 751, 820, 824
Fsp4HI	GCNGC	4 cut(s)	144, 444, 570, 659
GlaI	GCGC	1 cut(s)	457
GluI	GCNGC	4 cut(s)	144, 444, 570, 659
HapII	CCGG	2 cut(s)	134, 702
HgaI	GACGC	1 cut(s)	322
HhaI	GCGC	1 cut(s)	458
Hin1II	CATG	3 cut(s)	250, 257, 850
Hin6I	GCGC	1 cut(s)	456
HinP1I	GCGC	1 cut(s)	456
HindIII	AAGCTT	1 cut(s)	555
HinfI	GANTC	7 cut(s)	98, 159, 307, 434, 485, 613, 800
HpaII	CCGG	2 cut(s)	134, 702
HphI	GGTGA	1 cut(s)	745
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	2 cut(s)	306, 312
Hpy188III	TCNNGA	2 cut(s)	289, 610
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	1 cut(s)	322
HpyCH4III	ACNGT	1 cut(s)	763
HpyCH4V	TGCA	4 cut(s)	257, 476, 572, 790
HpyF3I	CTNAG	3 cut(s)	7, 493, 806
Hsp92II	CATG	3 cut(s)	250, 257, 850
HspAI	GCGC	1 cut(s)	456
Kzo9I	GATC	4 cut(s)	90, 121, 291, 549
LpnPI	CCDG	5 cut(s)	147, 191, 647, 715, 800
Lsp1109I	GCAGC	3 cut(s)	130, 455, 556
LweI	GCATC	1 cut(s)	266
MaeIII	GTNAC	4 cut(s)	108, 340, 688, 751
MalI	GATC	4 cut(s)	92, 123, 293, 551
MboI	GATC	4 cut(s)	90, 121, 291, 549
MboII	GAAGA	3 cut(s)	193, 355, 409
MfeI	CAATTG	1 cut(s)	34
MflI	RGATCY	2 cut(s)	121, 549
MluCI	AATT	5 cut(s)	34, 137, 187, 346, 827
MlyI	GAGTC	3 cut(s)	168, 494, 794
MnlI	CCTC	8 cut(s)	33, 226, 345, 529, 617, 729, 801, 845
Mph1103I	ATGCAT	1 cut(s)	259
MroXI	GAANNNNTTC	1 cut(s)	617
MseI	TTAA	3 cut(s)	318, 582, 695
MslI	CAYNNNNRTG	1 cut(s)	276
MspI	CCGG	2 cut(s)	134, 702
MspR9I	CCNGG	1 cut(s)	134
MunI	CAATTG	1 cut(s)	34
MvnI	CGCG	1 cut(s)	456
NciI	CCSGG	1 cut(s)	134
NdeII	GATC	4 cut(s)	90, 121, 291, 549
NlaIII	CATG	3 cut(s)	250, 257, 850
NlaIV	GGNNCC	3 cut(s)	333, 383, 551
NmuCI	GTSAC	2 cut(s)	340, 751
NsiI	ATGCAT	1 cut(s)	259
PaeR7I	CTCGAG	1 cut(s)	533
PdmI	GAANNNNTTC	1 cut(s)	617
PfeI	GAWTC	4 cut(s)	98, 307, 434, 613
PflMI	CCANNNNNTGG	1 cut(s)	559
PinAI	ACCGGT	1 cut(s)	701
PkrI	GCNGC	4 cut(s)	145, 445, 571, 660
PleI	GAGTC	3 cut(s)	167, 493, 794
PpsI	GAGTC	3 cut(s)	167, 493, 794
PpuMI	RGGWCCY	1 cut(s)	332
Psp5II	RGGWCCY	1 cut(s)	332
PspEI	GGTNACC	1 cut(s)	688
PspN4I	GGNNCC	3 cut(s)	333, 383, 551
PspPI	GGNCC	2 cut(s)	332, 709
PspPPI	RGGWCCY	1 cut(s)	332
PspXI	VCTCGAGB	1 cut(s)	533
PsuI	RGATCY	2 cut(s)	121, 549
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	3 cut(s)	318, 582, 695
SatI	GCNGC	4 cut(s)	144, 444, 570, 659
Sau3AI	GATC	4 cut(s)	90, 121, 291, 549
Sau96I	GGNCC	2 cut(s)	332, 709
SchI	GAGTC	3 cut(s)	168, 494, 794
ScrFI	CCNGG	1 cut(s)	134
SetI	ASST	9 cut(s)	115, 231, 287, 337, 499, 559, 571, 695, 750
SfaNI	GCATC	1 cut(s)	266
Sfr274I	CTCGAG	1 cut(s)	533
SinI	GGWCC	2 cut(s)	332, 709
SlaI	CTCGAG	1 cut(s)	533
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	5 cut(s)	34, 137, 187, 346, 827
SsiI	CCGC	1 cut(s)	658
SspI	AATATT	1 cut(s)	323
StyD4I	CCNGG	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	1 cut(s)	763
TaqI	TCGA	5 cut(s)	288, 432, 527, 534, 666
TaqII	GACCGA	1 cut(s)	712
TasI	AATT	5 cut(s)	34, 137, 187, 346, 827
TauI	GCSGC	1 cut(s)	661
TfiI	GAWTC	4 cut(s)	98, 307, 434, 613
Tru1I	TTAA	3 cut(s)	318, 582, 695
Tru9I	TTAA	3 cut(s)	318, 582, 695
TseFI	GTSAC	2 cut(s)	340, 751
TseI	GCWGC	3 cut(s)	143, 443, 569
Tsp45I	GTSAC	2 cut(s)	340, 751
TspDTI	ATGAA	5 cut(s)	193, 242, 454, 605, 669
Van91I	CCANNNNNTGG	1 cut(s)	559
VpaK11BI	GGWCC	2 cut(s)	332, 709
XapI	RAATTY	1 cut(s)	137
XcmI	CCANNNNNNNNNTGG	2 cut(s)	244, 844
XhoI	CTCGAG	1 cut(s)	533
XmnI	GAANNNNTTC	1 cut(s)	617
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.