Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002107

Physical Location & Seq

Genomic Coordinates Reverse (-)

18668509 .. 18668787

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG117900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGAAGGGCTAGGGAAAGCCGGACAGCTAATCAAAAGATCTAAGCTACGTGGGTTTTTCTTGAATATTCTTTTCAGAGCGTTCTCTGTTGCTGTGGTCTATGATTTGAACAAGATTGGCCTTAAAGCATTTCCAGGACGTGAAATAATAATGCCATTGCTTGCTTTAAACTCCATGTCCTTGATGAGGATGTTGTCGCTAATGGTGTATTCAAATCAATACTATGAGTGCAAGGAGAATCATGGAGAAGAGCTTGAACTGCAAGGAAGTATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

92

Amino Acids

10.5

Weight (kDa)

9.21

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18680 AT2G18690 AT2G18690
malus_domestica	MD16G1263500.v1.1
prunus_persica	Prupe.1G095700_v2.0.a1 Prupe.1G095800_v2.0.a1 Prupe.1G095900_v2.0.a1
pyrus_communis	pycom16g23240
rosa_chinensis	RchiOBHm_Chr4g0404701 RchiOBHm_Chr4g0404711 RchiOBHm_Chr4g0404721
rosa_laevigata	RLG00000008905 RLG00000008906 RLG00000008908 RLG00000008911 RLG00000008912 RLG00000008914
rosa_multiflora	Rmu_sc0001179.1_g000050 Rmu_sc0001179.1_g000051 Rmu_sc0004312.1_g000001 Rmu_sc0005685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017040 Rroxscaffold_5G00348900 Rroxscaffold_5G00348910
rosa_rugosa	Rorug04G0048900 Rorug04G0049000
rosa_samantha	Rh4AG124600 Rh4AG124700 Rh4BG118800 Rh4BG118900 Rh4BG119000 Rh4CG132800 Rh4CG132900 Rh4CG133000 Rh4DG117900 Rh4DG118000 Rh4DG118100 Rh5AG418500 Rh5BG434300 Rh5CG457500 Rh5DG447400
rosa_wichuraiana	Rw4G010090 Rw4G010100 Rw5G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	186
AgsI	TTSAA	4 cut(s)	64, 109, 213, 257
AjiI	CACGTC	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	3 cut(s)	28, 46, 253
AluI	AGCT	3 cut(s)	28, 46, 253
AoxI	GGCC	1 cut(s)	118
BciT130I	CCWGG	1 cut(s)	135
BfaI	CTAG	1 cut(s)	11
BglII	AGATCT	1 cut(s)	38
Bme1390I	CCNGG	1 cut(s)	135
BmgBI	CACGTC	1 cut(s)	140
BmrFI	CCNGG	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse3DI	GCAATG	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	135
BseGI	GGATG	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMI	GCAATG	1 cut(s)	155
BshFI	GGCC	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	186
BsnI	GGCC	1 cut(s)	120
Bsp143I	GATC	1 cut(s)	38
BspANI	GGCC	1 cut(s)	120
BspQI	GCTCTTC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	155
BssMI	GATC	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	135
Bst6I	CTCTTC	1 cut(s)	243
BstBAI	YACGTR	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	1 cut(s)	42
BstENI	CCTNNNNNAGG	1 cut(s)	184
BstF5I	GGATG	1 cut(s)	195
BstKTI	GATC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	38
BstMWI	GCNNNNNNNGC	1 cut(s)	259
BstNI	CCWGG	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	120
BtrI	CACGTC	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	162
CviAII	CATG	2 cut(s)	175, 242
CviJI	RGCY	6 cut(s)	10, 20, 28, 46, 120, 253
CviKI_1	RGCY	6 cut(s)	10, 20, 28, 46, 120, 253
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	1 cut(s)	40
DpnII	GATC	1 cut(s)	38
DraI	TTTAAA	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
EcoNI	CCTNNNNNAGG	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	133
EcoT22I	ATGCAT	1 cut(s)	276
FaeI	CATG	2 cut(s)	178, 245
FaiI	YATR	5 cut(s)	102, 176, 225, 243, 272
FatI	CATG	2 cut(s)	174, 241
FokI	GGATG	1 cut(s)	202
FspBI	CTAG	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	120
HapII	CCGG	1 cut(s)	21
Hin1II	CATG	2 cut(s)	178, 245
HinfI	GANTC	1 cut(s)	238
HpaII	CCGG	1 cut(s)	21
Hpy188I	TCNGA	1 cut(s)	77
Hpy188III	TCNNGA	1 cut(s)	61
HpyCH4IV	ACGT	2 cut(s)	49, 139
HpyCH4V	TGCA	3 cut(s)	231, 262, 274
HpyF10VI	GCNNNNNNNGC	1 cut(s)	259
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	2 cut(s)	49, 139
Hsp92II	CATG	2 cut(s)	178, 245
Kzo9I	GATC	1 cut(s)	38
LguI	GCTCTTC	1 cut(s)	243
LpnPI	CCDG	3 cut(s)	34, 120, 147
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	2 cut(s)	49, 139
MalI	GATC	1 cut(s)	40
MboI	GATC	1 cut(s)	38
MboII	GAAGA	1 cut(s)	260
MflI	RGATCY	1 cut(s)	38
MnlI	CCTC	1 cut(s)	180
Mph1103I	ATGCAT	1 cut(s)	276
MseI	TTAA	2 cut(s)	123, 167
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	259
NdeII	GATC	1 cut(s)	38
NlaIII	CATG	2 cut(s)	178, 245
NsiI	ATGCAT	1 cut(s)	276
PciSI	GCTCTTC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	238
PfoI	TCCNGGA	1 cut(s)	133
Ppu21I	YACGTR	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	38
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	2 cut(s)	123, 167
Sau3AI	GATC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	135
SetI	ASST	5 cut(s)	30, 48, 52, 142, 255
SspI	AATATT	1 cut(s)	67
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	133
TaiI	ACGT	2 cut(s)	52, 142
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	2 cut(s)	123, 167
Tru9I	TTAA	2 cut(s)	123, 167
XagI	CCTNNNNNAGG	1 cut(s)	184
XspI	CTAG	1 cut(s)	11
Zsp2I	ATGCAT	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.