Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002107

Physical Location & Seq

Genomic Coordinates Reverse (-)

18685541 .. 18686926

Gene Structure 1386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG118100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTACCCCTTTGCAATGCAAGAAAGATTTAGAAGCTCTGAACAGTATCAATCCCTCTTTCTTTTGATGAAGTTTAACATGCTTTTGGATTTTCTGGGACTCCTAAGGGAATCCCACAAGCTTTTCTTCCGAAATGGGAAGGCCATGTCCTCCCTCACCCTTCTCATAATACTTGTTACTTCTTTCCTGTTGGTGATTCATTTCTACTCCCTCAAACCAATAATTACTGATATTACAATCAAGGAAAACTTCCTGGCAGCTACAAGTCCCACTGGCGCTGAATTCGCTCGTCTTCTAACTGCCCTGATGTACGACTTCAGAGTATATCTTGGACTACAATGGATTTTCATTTTGGGGTCCTCTTTTACCTCATTCTATTTTGCAACAGCCTCAATCTTAGCATCAGCAGTATCATACTGTGGAAATGACTTGTCCATCAAGGAACTTCTACCAAGGGCACTGAGGTCACTGAAAAGACCATTTGTTACATGGTTTTACATAACACTGCTTGATCTAGGCTACTTATCATTTCTCTTTGCATTTTTTTTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

21.33

Weight (kDa)

9.41

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18680 AT2G18690 AT2G18690
malus_domestica	MD16G1263500.v1.1
prunus_persica	Prupe.1G095700_v2.0.a1 Prupe.1G095800_v2.0.a1 Prupe.1G095900_v2.0.a1
pyrus_communis	pycom16g23240
rosa_chinensis	RchiOBHm_Chr4g0404701 RchiOBHm_Chr4g0404711 RchiOBHm_Chr4g0404721
rosa_laevigata	RLG00000008905 RLG00000008906 RLG00000008908 RLG00000008911 RLG00000008912 RLG00000008914
rosa_multiflora	Rmu_sc0001179.1_g000050 Rmu_sc0001179.1_g000051 Rmu_sc0004312.1_g000001 Rmu_sc0005685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017040 Rroxscaffold_5G00348900 Rroxscaffold_5G00348910
rosa_rugosa	Rorug04G0048900 Rorug04G0049000
rosa_samantha	Rh4AG124600 Rh4AG124700 Rh4BG118800 Rh4BG118900 Rh4BG119000 Rh4CG132800 Rh4CG132900 Rh4CG133000 Rh4DG117900 Rh4DG118000 Rh4DG118100 Rh5AG418500 Rh5BG434300 Rh5CG457500 Rh5DG447400
rosa_wichuraiana	Rw4G010090 Rw4G010100 Rw5G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	281
AcuI	CTGAAG	1 cut(s)	301
AfaI	GTAC	2 cut(s)	5, 311
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	3 cut(s)	36, 121, 260
AluI	AGCT	3 cut(s)	36, 121, 260
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	357
AsuHPI	GGTGA	2 cut(s)	148, 205
AvaII	GGWCC	1 cut(s)	357
AxyI	CCTNAGG	1 cut(s)	104
BaeGI	GKGCMC	1 cut(s)	460
BbsI	GAAGAC	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	1 cut(s)	443
BciT130I	CCWGG	1 cut(s)	254
BfaI	CTAG	1 cut(s)	515
BfoI	RGCGCY	1 cut(s)	279
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	1 cut(s)	254
Bme18I	GGWCC	1 cut(s)	357
BmgT120I	GGNCC	1 cut(s)	357
BmiI	GGNNCC	1 cut(s)	358
BmrFI	CCNGG	1 cut(s)	254
BmsI	GCATC	1 cut(s)	410
BpiI	GAAGAC	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	452
Bse1I	ACTGG	1 cut(s)	277
Bse21I	CCTNAGG	1 cut(s)	104
Bse3DI	GCAATG	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	1 cut(s)	452
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	452
BseNI	ACTGG	1 cut(s)	277
BseSI	GKGCMC	1 cut(s)	460
BseXI	GCAGC	1 cut(s)	269
BshFI	GGCC	1 cut(s)	143
BslFI	GGGAC	2 cut(s)	111, 252
BsmFI	GGGAC	2 cut(s)	111, 252
BsnI	GGCC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	1 cut(s)	511
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	453
BspLI	GGNNCC	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	277
BssECI	CCNNGG	1 cut(s)	452
BssMI	GATC	1 cut(s)	511
BssT1I	CCWWGG	1 cut(s)	452
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	2 cut(s)	45, 419
BstDEI	CTNAG	3 cut(s)	104, 397, 461
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	1 cut(s)	514
BstMBI	GATC	1 cut(s)	511
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNI	CCWGG	1 cut(s)	254
BstNSI	RCATGY	1 cut(s)	82
BstSCI	CCNGG	1 cut(s)	252
BstSLI	GKGCMC	1 cut(s)	460
BstV1I	GCAGC	1 cut(s)	269
BstV2I	GAAGAC	1 cut(s)	284
Bsu36I	CCTNAGG	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	143
BtsI	GCAGTG	1 cut(s)	503
BtsIMutI	CAGTG	4 cut(s)	270, 458, 467, 503
CfoI	GCGC	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	357
Csp6I	GTAC	2 cut(s)	4, 310
CviAII	CATG	3 cut(s)	79, 145, 489
CviJI	RGCY	6 cut(s)	36, 121, 143, 260, 389, 519
CviKI_1	RGCY	6 cut(s)	36, 121, 143, 260, 389, 519
CviQI	GTAC	2 cut(s)	4, 310
DdeI	CTNAG	3 cut(s)	104, 397, 461
DpnI	GATC	1 cut(s)	513
DpnII	GATC	1 cut(s)	511
Eco130I	CCWWGG	1 cut(s)	452
Eco47I	GGWCC	1 cut(s)	357
Eco57I	CTGAAG	1 cut(s)	301
Eco81I	CCTNAGG	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	357
EcoRI	GAATTC	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	452
ErhI	CCWWGG	1 cut(s)	452
FaeI	CATG	3 cut(s)	82, 148, 492
FaiI	YATR	7 cut(s)	80, 146, 167, 325, 415, 490, 500
FalI	AAGNNNNNCTT	4 cut(s)	110, 142, 233, 265
FaqI	GGGAC	2 cut(s)	111, 252
FatI	CATG	3 cut(s)	78, 144, 488
Fnu4HI	GCNGC	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	1 cut(s)	515
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	1 cut(s)	258
HaeII	RGCGCY	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	143
HhaI	GCGC	1 cut(s)	278
Hin1II	CATG	3 cut(s)	82, 148, 492
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	3 cut(s)	99, 110, 196
HphI	GGTGA	2 cut(s)	148, 205
Hpy188I	TCNGA	3 cut(s)	40, 131, 320
HpyAV	CCTTC	2 cut(s)	133, 170
HpyCH4III	ACNGT	2 cut(s)	45, 419
HpyCH4V	TGCA	4 cut(s)	14, 19, 383, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	3 cut(s)	104, 397, 461
Hsp92II	CATG	3 cut(s)	82, 148, 492
HspAI	GCGC	1 cut(s)	276
Kzo9I	GATC	1 cut(s)	511
LpnPI	CCDG	6 cut(s)	80, 200, 239, 258, 266, 317
Lsp1109I	GCAGC	1 cut(s)	269
LweI	GCATC	1 cut(s)	410
MaeI	CTAG	1 cut(s)	515
MaeIII	GTNAC	3 cut(s)	175, 465, 484
MalI	GATC	1 cut(s)	513
MboI	GATC	1 cut(s)	511
MboII	GAAGA	2 cut(s)	118, 284
MhlI	GDGCHC	1 cut(s)	460
MluCI	AATT	2 cut(s)	222, 281
MlyI	GAGTC	1 cut(s)	93
MnlI	CCTC	8 cut(s)	65, 160, 164, 221, 370, 379, 400, 456
MseI	TTAA	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	284
NdeII	GATC	1 cut(s)	511
NlaIII	CATG	3 cut(s)	82, 148, 492
NlaIV	GGNNCC	1 cut(s)	358
NmuCI	GTSAC	1 cut(s)	465
NspI	RCATGY	1 cut(s)	82
PfeI	GAWTC	2 cut(s)	110, 196
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	93
PpuMI	RGGWCCY	1 cut(s)	357
Psp5II	RGGWCCY	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	358
PspPI	GGNCC	1 cut(s)	357
PspPPI	RGGWCCY	1 cut(s)	357
RsaI	GTAC	2 cut(s)	5, 311
RsaNI	GTAC	2 cut(s)	4, 310
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	1 cut(s)	511
Sau96I	GGNCC	1 cut(s)	357
SchI	GAGTC	1 cut(s)	93
ScrFI	CCNGG	1 cut(s)	254
SduI	GDGCHC	1 cut(s)	460
SetI	ASST	5 cut(s)	38, 123, 262, 371, 467
SfaNI	GCATC	1 cut(s)	410
SinI	GGWCC	1 cut(s)	357
Sse9I	AATT	2 cut(s)	222, 281
SspMI	CTAG	1 cut(s)	515
StyD4I	CCNGG	1 cut(s)	252
StyI	CCWWGG	1 cut(s)	452
TaaI	ACNGT	2 cut(s)	45, 419
TasI	AATT	2 cut(s)	222, 281
TfiI	GAWTC	2 cut(s)	110, 196
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	4 cut(s)	277, 465, 474, 510
TseFI	GTSAC	1 cut(s)	465
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	465
TspDTI	ATGAA	3 cut(s)	83, 188, 337
TspRI	CASTG	4 cut(s)	277, 465, 474, 510
VpaK11BI	GGWCC	1 cut(s)	357
XapI	RAATTY	1 cut(s)	281
XceI	RCATGY	1 cut(s)	82
XcmI	CCANNNNNNNNNTGG	1 cut(s)	486
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.