Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002107

Physical Location & Seq

Genomic Coordinates Reverse (-)

19902984 .. 19904378

Gene Structure 1395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG119000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGTACCCCTTTGCAATGCAAGAAAGATTTAGAAGCTCTGAAGAGTATCAATCCCTCTTTCCTTTGATGAAGTTTAACATGCTTTTGGATTTTCTGGGACTCCTAAGGGAATCCCACAAGCTTTTCTTCCGAAATGGGAAGGCCATGTCCTCCATCACCCTTCTCATAATACTTGTTACTTCTTTCCTGTTGGTGATTTATATCTACTCCCTCAAACCAATAATTACTGATTTTACAATCAAGGCAAGCTTCCTGGCAGCTACAAGTCCCACGGGCGCTGAATTCGCTGATCTTCTAACTGCTGAGAAGTACGACTTCAGATTACTTCTTGGAGTACAATGGATTTTCATTTTGGGGTTCTCTTTTACCTCACTGTTTTTTGCAACAGCCTCAATCTTAGCATCAGCAGTATCATACTGTGGAAAAGACTTGTCCATCAAGGAACTTCTACCAAGGGCACTGAGGTCACTGAAAAGACCATTTGTTACATGGTTTTACATAACACTGCTTGATCTAGGCTACTTTTCATTTCTCTTTGCATTTGTTCTTCCTTTAGTGCTGATTTTCAATCTTAAGCTCACCATATCTGCTTTCACTATAGTCGCATGTATTCTAGCCGTGGTTATCCGAACTTATCTAGCTGTTGTGTGGAACTTAGCACTAGTTGTTTCGATACTAGAAGAAAAATGTGGCATTGAGGCACTTGGGAAAGCTGGACAGCTTATTAAGGGATCCAAGCTACGAGGGTTTTTTCTGAATCTTGTTATAGCCACTGCCTCCTTGGTGTTGTTTGTTTTGTATAAGACTGTCGCTAAAGCTATGCCAGTAAAAGAGCTAGCACAGATAATTCCATTGCTCCTGTTAAATTGTATCGGCTGCCTCATAACTATGGTTTCGCGAATGGCATACACAGTCCTGTACTATGAGTCCAAGGCGACTCATGGAGAAGAGCTTGAACTGCAAGGAAGCTTGGAATATGCTAAGGTTTCCTCTGCTACCCCTCTTATCAATGCAGATGCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

38.13

Weight (kDa)

9.05

Isoelectric Point (pI)

34.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18680 AT2G18690 AT2G18690
malus_domestica	MD16G1263500.v1.1
prunus_persica	Prupe.1G095700_v2.0.a1 Prupe.1G095800_v2.0.a1 Prupe.1G095900_v2.0.a1
pyrus_communis	pycom16g23240
rosa_chinensis	RchiOBHm_Chr4g0404701 RchiOBHm_Chr4g0404711 RchiOBHm_Chr4g0404721
rosa_laevigata	RLG00000008905 RLG00000008906 RLG00000008908 RLG00000008911 RLG00000008912 RLG00000008914
rosa_multiflora	Rmu_sc0001179.1_g000050 Rmu_sc0001179.1_g000051 Rmu_sc0004312.1_g000001 Rmu_sc0005685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017040 Rroxscaffold_5G00348900 Rroxscaffold_5G00348910
rosa_rugosa	Rorug04G0048900 Rorug04G0049000
rosa_samantha	Rh4AG124600 Rh4AG124700 Rh4BG118800 Rh4BG118900 Rh4BG119000 Rh4CG132800 Rh4CG132900 Rh4CG133000 Rh4DG117900 Rh4DG118000 Rh4DG118100 Rh5AG418500 Rh5BG434300 Rh5CG457500 Rh5DG447400
rosa_wichuraiana	Rw4G010090 Rw4G010100 Rw5G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	898
AclWI	GGATC	2 cut(s)	726, 739
AcsI	RAATTY	1 cut(s)	281
AcuI	CTGAAG	2 cut(s)	60, 301
AfaI	GTAC	4 cut(s)	5, 311, 336, 920
AflII	CTTAAG	1 cut(s)	572
AgsI	TTSAA	2 cut(s)	568, 956
AhlI	ACTAGT	1 cut(s)	661
AjnI	CCWGG	1 cut(s)	252
AlwI	GGATC	2 cut(s)	726, 739
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	2 cut(s)	257, 876
ApoI	RAATTY	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	278
AsuHPI	GGTGA	3 cut(s)	148, 205, 571
AsuNHI	GCTAGC	1 cut(s)	835
AxyI	CCTNAGG	1 cut(s)	104
BaeGI	GKGCMC	1 cut(s)	460
BamHI	GGATCC	1 cut(s)	731
BbvI	GCAGC	2 cut(s)	269, 863
BccI	CCATC	2 cut(s)	161, 443
BceAI	ACGGC	1 cut(s)	602
BciT130I	CCWGG	1 cut(s)	254
BcuI	ACTAGT	1 cut(s)	661
BfaI	CTAG	6 cut(s)	515, 614, 638, 662, 677, 836
BfmI	CTRYAG	1 cut(s)	597
BfoI	RGCGCY	1 cut(s)	279
BfrI	CTTAAG	1 cut(s)	572
BisI	GCNGC	2 cut(s)	258, 877
BlsI	GCNGC	2 cut(s)	259, 878
Bme1390I	CCNGG	1 cut(s)	254
BmiI	GGNNCC	1 cut(s)	733
BmrFI	CCNGG	1 cut(s)	254
BmsI	GCATC	2 cut(s)	410, 1006
BmtI	GCTAGC	1 cut(s)	839
Bpu10I	CCTNAGC	1 cut(s)	981
BsaBI	GATNNNNATC	1 cut(s)	200
BsaJI	CCNNGG	5 cut(s)	270, 452, 618, 780, 930
Bse1I	ACTGG	1 cut(s)	824
Bse21I	CCTNAGG	1 cut(s)	104
Bse3DI	GCAATG	2 cut(s)	21, 851
Bse8I	GATNNNNATC	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	5 cut(s)	270, 452, 618, 780, 930
BseJI	GATNNNNATC	1 cut(s)	200
BseMI	GCAATG	2 cut(s)	21, 851
BseMII	CTCAG	2 cut(s)	294, 452
BseNI	ACTGG	1 cut(s)	824
BseSI	GKGCMC	1 cut(s)	460
BseXI	GCAGC	2 cut(s)	269, 863
Bsh1236I	CGCG	1 cut(s)	898
BshFI	GGCC	1 cut(s)	143
BslFI	GGGAC	2 cut(s)	111, 252
BsmFI	GGGAC	2 cut(s)	111, 252
BsnI	GGCC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	3 cut(s)	289, 511, 731
Bsp68I	TCGCGA	1 cut(s)	898
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	2 cut(s)	295, 453
BspFNI	CGCG	1 cut(s)	898
BspLI	GGNNCC	1 cut(s)	733
BspOI	GCTAGC	1 cut(s)	839
BspPI	GGATC	2 cut(s)	726, 739
BspQI	GCTCTTC	1 cut(s)	942
BspTI	CTTAAG	1 cut(s)	572
BsrDI	GCAATG	2 cut(s)	21, 851
BsrI	ACTGG	1 cut(s)	824
BssECI	CCNNGG	5 cut(s)	270, 452, 618, 780, 930
BssMI	GATC	3 cut(s)	289, 511, 731
BssT1I	CCWWGG	3 cut(s)	452, 780, 930
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	4 cut(s)	375, 419, 808, 913
Bst6I	CTCTTC	2 cut(s)	36, 942
BstAFI	CTTAAG	1 cut(s)	572
BstC8I	GCNNGC	2 cut(s)	247, 837
BstDEI	CTNAG	6 cut(s)	104, 303, 397, 461, 655, 981
BstDSI	CCRYGG	2 cut(s)	270, 618
BstFNI	CGCG	1 cut(s)	898
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	3 cut(s)	292, 514, 734
BstMBI	GATC	3 cut(s)	289, 511, 731
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 958
BstNI	CCWGG	1 cut(s)	254
BstNSI	RCATGY	2 cut(s)	82, 609
BstSCI	CCNGG	1 cut(s)	252
BstSFI	CTRYAG	1 cut(s)	597
BstSLI	GKGCMC	1 cut(s)	460
BstUI	CGCG	1 cut(s)	898
BstV1I	GCAGC	2 cut(s)	269, 863
BstX2I	RGATCY	1 cut(s)	731
BstYI	RGATCY	1 cut(s)	731
Bsu36I	CCTNAGG	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	143
BtgI	CCRYGG	2 cut(s)	270, 618
BtsI	GCAGTG	2 cut(s)	503, 771
BtsIMutI	CAGTG	5 cut(s)	371, 458, 467, 503, 771
BtuMI	TCGCGA	1 cut(s)	898
Cac8I	GCNNGC	2 cut(s)	247, 837
CfoI	GCGC	1 cut(s)	278
Csp6I	GTAC	4 cut(s)	4, 310, 335, 919
CviAII	CATG	5 cut(s)	79, 145, 489, 606, 941
CviQI	GTAC	4 cut(s)	4, 310, 335, 919
DdeI	CTNAG	6 cut(s)	104, 303, 397, 461, 655, 981
DpnI	GATC	3 cut(s)	291, 513, 733
DpnII	GATC	3 cut(s)	289, 511, 731
Eam1104I	CTCTTC	2 cut(s)	36, 942
EarI	CTCTTC	2 cut(s)	36, 942
Eco130I	CCWWGG	3 cut(s)	452, 780, 930
Eco57I	CTGAAG	2 cut(s)	60, 301
Eco81I	CCTNAGG	1 cut(s)	104
EcoRI	GAATTC	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	252
EcoT14I	CCWWGG	3 cut(s)	452, 780, 930
ErhI	CCWWGG	3 cut(s)	452, 780, 930
FaeI	CATG	5 cut(s)	82, 148, 492, 609, 944
FalI	AAGNNNNNCTT	6 cut(s)	110, 142, 233, 265, 299, 331
FaqI	GGGAC	2 cut(s)	111, 252
FatI	CATG	5 cut(s)	78, 144, 488, 605, 940
Fnu4HI	GCNGC	2 cut(s)	258, 877
Fsp4HI	GCNGC	2 cut(s)	258, 877
FspBI	CTAG	6 cut(s)	515, 614, 638, 662, 677, 836
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	2 cut(s)	258, 877
HaeII	RGCGCY	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	143
HhaI	GCGC	1 cut(s)	278
Hin1II	CATG	5 cut(s)	82, 148, 492, 609, 944
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HindIII	AAGCTT	3 cut(s)	119, 247, 967
HinfI	GANTC	5 cut(s)	99, 110, 757, 926, 937
HphI	GGTGA	3 cut(s)	148, 205, 571
Hpy188I	TCNGA	5 cut(s)	40, 131, 320, 629, 756
Hpy188III	TCNNGA	1 cut(s)	897
HpyAV	CCTTC	2 cut(s)	133, 170
HpyCH4III	ACNGT	4 cut(s)	375, 419, 808, 913
HpyCH4V	TGCA	7 cut(s)	14, 19, 383, 539, 961, 1013, 1019
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 958
HpyF3I	CTNAG	6 cut(s)	104, 303, 397, 461, 655, 981
Hsp92II	CATG	5 cut(s)	82, 148, 492, 609, 944
HspAI	GCGC	1 cut(s)	276
Kzo9I	GATC	3 cut(s)	289, 511, 731
LguI	GCTCTTC	1 cut(s)	942
LmnI	GCTCC	1 cut(s)	861
LpnPI	CCDG	8 cut(s)	80, 200, 239, 266, 699, 837, 872, 929
Lsp1109I	GCAGC	2 cut(s)	269, 863
LweI	GCATC	2 cut(s)	410, 1006
MaeI	CTAG	6 cut(s)	515, 614, 638, 662, 677, 836
MaeIII	GTNAC	3 cut(s)	175, 465, 484
MalI	GATC	3 cut(s)	291, 513, 733
MboI	GATC	3 cut(s)	289, 511, 731
MboII	GAAGA	6 cut(s)	53, 118, 284, 539, 692, 959
MflI	RGATCY	1 cut(s)	731
MhlI	GDGCHC	1 cut(s)	460
MluCI	AATT	4 cut(s)	222, 281, 846, 865
MlyI	GAGTC	3 cut(s)	93, 931, 935
MseI	TTAA	4 cut(s)	75, 573, 726, 863
MslI	CAYNNNNRTG	1 cut(s)	887
MspCI	CTTAAG	1 cut(s)	572
MspR9I	CCNGG	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	254
MvnI	CGCG	1 cut(s)	898
MwoI	GCNNNNNNNGC	2 cut(s)	284, 958
NdeII	GATC	3 cut(s)	289, 511, 731
NheI	GCTAGC	1 cut(s)	835
NlaIII	CATG	5 cut(s)	82, 148, 492, 609, 944
NlaIV	GGNNCC	1 cut(s)	733
NmuCI	GTSAC	1 cut(s)	465
NruI	TCGCGA	1 cut(s)	898
NspI	RCATGY	2 cut(s)	82, 609
PciSI	GCTCTTC	1 cut(s)	942
PfeI	GAWTC	2 cut(s)	110, 757
PkrI	GCNGC	2 cut(s)	259, 878
PleI	GAGTC	3 cut(s)	93, 931, 934
PpsI	GAGTC	3 cut(s)	93, 931, 934
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	733
PsuI	RGATCY	1 cut(s)	731
RruI	TCGCGA	1 cut(s)	898
RsaI	GTAC	4 cut(s)	5, 311, 336, 920
RsaNI	GTAC	4 cut(s)	4, 310, 335, 919
RseI	CAYNNNNRTG	1 cut(s)	887
SapI	GCTCTTC	1 cut(s)	942
SaqAI	TTAA	4 cut(s)	75, 573, 726, 863
SatI	GCNGC	2 cut(s)	258, 877
Sau3AI	GATC	3 cut(s)	289, 511, 731
SchI	GAGTC	3 cut(s)	93, 931, 935
ScrFI	CCNGG	1 cut(s)	254
SduI	GDGCHC	1 cut(s)	460
SfaNI	GCATC	2 cut(s)	410, 1006
SfcI	CTRYAG	1 cut(s)	597
SmiMI	CAYNNNNRTG	1 cut(s)	887
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
SpeI	ACTAGT	1 cut(s)	661
Sse9I	AATT	4 cut(s)	222, 281, 846, 865
SspMI	CTAG	6 cut(s)	515, 614, 638, 662, 677, 836
StyD4I	CCNGG	1 cut(s)	252
StyI	CCWWGG	3 cut(s)	452, 780, 930
TaaI	ACNGT	4 cut(s)	375, 419, 808, 913
TaqI	TCGA	1 cut(s)	671
TasI	AATT	4 cut(s)	222, 281, 846, 865
TatI	WGTACW	2 cut(s)	334, 918
TfiI	GAWTC	2 cut(s)	110, 757
Tru1I	TTAA	4 cut(s)	75, 573, 726, 863
Tru9I	TTAA	4 cut(s)	75, 573, 726, 863
TscAI	CASTG	5 cut(s)	378, 465, 474, 510, 778
TseFI	GTSAC	1 cut(s)	465
TseI	GCWGC	2 cut(s)	257, 876
Tsp45I	GTSAC	1 cut(s)	465
TspDTI	ATGAA	3 cut(s)	83, 337, 516
TspRI	CASTG	5 cut(s)	378, 465, 474, 510, 778
Vha464I	CTTAAG	1 cut(s)	572
XapI	RAATTY	1 cut(s)	281
XceI	RCATGY	2 cut(s)	82, 609
XcmI	CCANNNNNNNNNTGG	2 cut(s)	486, 778
XspI	CTAG	6 cut(s)	515, 614, 638, 662, 677, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.