Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002107

Physical Location & Seq

Genomic Coordinates Forward (+)

42536289 .. 42537164

Gene Structure 876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008911

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGTCCTCCATCACCCTTCTCATAATACTTGTTACGTCTTTCCTGTTGGTGATTAATATCTACTCCCTCAAACCAACAATTACCGATTTTACAATCAAGGCAAGCTTCCTGGCAGCTACAAGTCCCACTGGCGCTGAATTCACCGATCTTCTAACTGCCATGACGTACGACTTCAGATTAGTTCTTGGAGTGGAATGGATTTTCATTTTGGGGTTCTCTTCTACCTCATTGTTTTTTGCAACAGCCTCAATCTTAGCATCGGCAGTATCATACTGTGGAAAAGACTTGTCCATCAAGGAACTTCTACCAAGGGCACTGAGGTCACTGAAAAGACCATTTGTTACATGGTTTTACATAACACTGCTTGATCTAGGCTACTTTTCATTTCTCTTTGCATTTGTTCTTCCTTTAGTGCTGATTTTCAATCTTAAGCTCACCATATCTGCTTTCAGTATAGTCGTATGTATTCTAGCTCTGGTTATCCGAACTTATCTAGCTGTTGTGTGGAACTTAGCACTAGTTGTTTCGATACTAGAAGAAAAATGTGGCATTGAGGCACTTGGGAAAGCTGGACAGCTTATTAAGGGATCCAAGCTACGAGGGTTTTTACTGAATCTTGTTATAGCCACTGCCTCGTTGGTGTTGTTTGTTTTGTATAGGACTGTCGCTCAAGCTATGCCAGTAAAAGCACTGATAATTCCACTGCTCCTGTTAAATTGTATCGGCTGCCTCATAACTATGGTTTCGCGAATGGCATACACAGTCCTGTACTATGAGTCCAAGGCGACTCATGGAGAAGAACTTGAACTGCAAGGAAGCTTGGAATATGCTAAGGTTTCCTCTGCTACCCCTCTTATCAATGCAGATGCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

292

Amino Acids

31.91

Weight (kDa)

8.74

Isoelectric Point (pI)

29.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18680 AT2G18690 AT2G18690
malus_domestica	MD16G1263500.v1.1
prunus_persica	Prupe.1G095700_v2.0.a1 Prupe.1G095800_v2.0.a1 Prupe.1G095900_v2.0.a1
pyrus_communis	pycom16g23240
rosa_chinensis	RchiOBHm_Chr4g0404701 RchiOBHm_Chr4g0404711 RchiOBHm_Chr4g0404721
rosa_laevigata	RLG00000008905 RLG00000008906 RLG00000008908 RLG00000008911 RLG00000008912 RLG00000008914
rosa_multiflora	Rmu_sc0001179.1_g000050 Rmu_sc0001179.1_g000051 Rmu_sc0004312.1_g000001 Rmu_sc0005685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017040 Rroxscaffold_5G00348900 Rroxscaffold_5G00348910
rosa_rugosa	Rorug04G0048900 Rorug04G0049000
rosa_samantha	Rh4AG124600 Rh4AG124700 Rh4BG118800 Rh4BG118900 Rh4BG119000 Rh4CG132800 Rh4CG132900 Rh4CG133000 Rh4DG117900 Rh4DG118000 Rh4DG118100 Rh5AG418500 Rh5BG434300 Rh5CG457500 Rh5DG447400
rosa_wichuraiana	Rw4G010090 Rw4G010100 Rw5G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	748
AclWI	GGATC	2 cut(s)	582, 595
AcsI	RAATTY	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	157
AfaI	GTAC	2 cut(s)	167, 770
AflII	CTTAAG	1 cut(s)	428
AgsI	TTSAA	2 cut(s)	424, 806
AhlI	ACTAGT	1 cut(s)	517
AjnI	CCWGG	1 cut(s)	108
AlwI	GGATC	2 cut(s)	582, 595
ApeKI	GCWGC	2 cut(s)	113, 726
ApoI	RAATTY	1 cut(s)	137
AseI	ATTAAT	1 cut(s)	54
AspLEI	GCGC	1 cut(s)	134
AsuHPI	GGTGA	4 cut(s)	4, 61, 133, 427
BaeGI	GKGCMC	1 cut(s)	316
BamHI	GGATCC	1 cut(s)	587
BbvI	GCAGC	2 cut(s)	125, 713
BccI	CCATC	2 cut(s)	17, 299
BciT130I	CCWGG	1 cut(s)	110
BcuI	ACTAGT	1 cut(s)	517
BfaI	CTAG	5 cut(s)	371, 470, 494, 518, 533
BfoI	RGCGCY	1 cut(s)	135
BfrI	CTTAAG	1 cut(s)	428
BisI	GCNGC	2 cut(s)	114, 727
BlsI	GCNGC	2 cut(s)	115, 728
Bme1390I	CCNGG	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	589
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	2 cut(s)	266, 856
Bpu10I	CCTNAGC	1 cut(s)	831
BpuEI	CTTGAG	1 cut(s)	654
BsaBI	GATNNNNATC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	308, 780
Bse1I	ACTGG	2 cut(s)	133, 680
Bse8I	GATNNNNATC	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	2 cut(s)	308, 780
BseJI	GATNNNNATC	1 cut(s)	56
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	2 cut(s)	133, 680
BseSI	GKGCMC	1 cut(s)	316
BseXI	GCAGC	2 cut(s)	125, 713
Bsh1236I	CGCG	1 cut(s)	748
BsiWI	CGTACG	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	3 cut(s)	145, 367, 587
Bsp68I	TCGCGA	1 cut(s)	748
BspCNI	CTCAG	1 cut(s)	309
BspFNI	CGCG	1 cut(s)	748
BspLI	GGNNCC	1 cut(s)	589
BspPI	GGATC	2 cut(s)	582, 595
BspTI	CTTAAG	1 cut(s)	428
BsrI	ACTGG	2 cut(s)	133, 680
BssECI	CCNNGG	2 cut(s)	308, 780
BssMI	GATC	3 cut(s)	145, 367, 587
BssT1I	CCWWGG	2 cut(s)	308, 780
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	3 cut(s)	275, 664, 763
Bst6I	CTCTTC	1 cut(s)	223
BstAFI	CTTAAG	1 cut(s)	428
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	4 cut(s)	253, 317, 511, 831
BstFNI	CGCG	1 cut(s)	748
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	3 cut(s)	148, 370, 590
BstMBI	GATC	3 cut(s)	145, 367, 587
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	316
BstUI	CGCG	1 cut(s)	748
BstV1I	GCAGC	2 cut(s)	125, 713
BstX2I	RGATCY	1 cut(s)	587
BstYI	RGATCY	1 cut(s)	587
BtsI	GCAGTG	3 cut(s)	359, 627, 701
BtsIMutI	CAGTG	7 cut(s)	126, 314, 323, 359, 627, 689, 701
BtuMI	TCGCGA	1 cut(s)	748
Cac8I	GCNNGC	1 cut(s)	103
CfoI	GCGC	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	166, 769
CviAII	CATG	3 cut(s)	160, 345, 791
CviQI	GTAC	2 cut(s)	166, 769
DdeI	CTNAG	4 cut(s)	253, 317, 511, 831
DpnI	GATC	3 cut(s)	147, 369, 589
DpnII	GATC	3 cut(s)	145, 367, 587
Eam1104I	CTCTTC	1 cut(s)	223
EarI	CTCTTC	1 cut(s)	223
Eco130I	CCWWGG	2 cut(s)	308, 780
Eco57I	CTGAAG	1 cut(s)	157
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	2 cut(s)	308, 780
ErhI	CCWWGG	2 cut(s)	308, 780
FaeI	CATG	3 cut(s)	163, 348, 794
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FaqI	GGGAC	1 cut(s)	108
FatI	CATG	3 cut(s)	159, 344, 790
Fnu4HI	GCNGC	2 cut(s)	114, 727
Fsp4HI	GCNGC	2 cut(s)	114, 727
FspBI	CTAG	5 cut(s)	371, 470, 494, 518, 533
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	2 cut(s)	114, 727
HaeII	RGCGCY	1 cut(s)	135
HhaI	GCGC	1 cut(s)	134
Hin1II	CATG	3 cut(s)	163, 348, 794
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HindIII	AAGCTT	2 cut(s)	103, 817
HinfI	GANTC	3 cut(s)	613, 776, 787
HphI	GGTGA	4 cut(s)	4, 61, 133, 427
Hpy188I	TCNGA	2 cut(s)	176, 485
Hpy188III	TCNNGA	1 cut(s)	747
HpyAV	CCTTC	1 cut(s)	26
HpyCH4III	ACNGT	3 cut(s)	275, 664, 763
HpyCH4IV	ACGT	2 cut(s)	35, 164
HpyCH4V	TGCA	5 cut(s)	239, 395, 811, 863, 869
HpyF3I	CTNAG	4 cut(s)	253, 317, 511, 831
HpySE526I	ACGT	2 cut(s)	35, 164
Hsp92II	CATG	3 cut(s)	163, 348, 794
HspAI	GCGC	1 cut(s)	132
Kzo9I	GATC	3 cut(s)	145, 367, 587
LmnI	GCTCC	1 cut(s)	711
LpnPI	CCDG	9 cut(s)	56, 95, 114, 122, 461, 555, 693, 722, 779
Lsp1109I	GCAGC	2 cut(s)	125, 713
LweI	GCATC	2 cut(s)	266, 856
MaeI	CTAG	5 cut(s)	371, 470, 494, 518, 533
MaeII	ACGT	2 cut(s)	35, 164
MaeIII	GTNAC	3 cut(s)	31, 321, 340
MalI	GATC	3 cut(s)	147, 369, 589
MboI	GATC	3 cut(s)	145, 367, 587
MboII	GAAGA	5 cut(s)	140, 210, 395, 548, 809
MflI	RGATCY	1 cut(s)	587
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	4 cut(s)	78, 137, 696, 715
MlyI	GAGTC	2 cut(s)	781, 785
MseI	TTAA	4 cut(s)	54, 429, 582, 713
MslI	CAYNNNNRTG	1 cut(s)	737
MspCI	CTTAAG	1 cut(s)	428
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	748
NdeII	GATC	3 cut(s)	145, 367, 587
NlaIII	CATG	3 cut(s)	163, 348, 794
NlaIV	GGNNCC	1 cut(s)	589
NmuCI	GTSAC	1 cut(s)	321
NruI	TCGCGA	1 cut(s)	748
PfeI	GAWTC	1 cut(s)	613
Pfl23II	CGTACG	1 cut(s)	165
PkrI	GCNGC	2 cut(s)	115, 728
PleI	GAGTC	2 cut(s)	781, 784
PpsI	GAGTC	2 cut(s)	781, 784
PshBI	ATTAAT	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspLI	CGTACG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	589
PsuI	RGATCY	1 cut(s)	587
RruI	TCGCGA	1 cut(s)	748
RsaI	GTAC	2 cut(s)	167, 770
RsaNI	GTAC	2 cut(s)	166, 769
RseI	CAYNNNNRTG	1 cut(s)	737
SaqAI	TTAA	4 cut(s)	54, 429, 582, 713
SatI	GCNGC	2 cut(s)	114, 727
Sau3AI	GATC	3 cut(s)	145, 367, 587
SchI	GAGTC	2 cut(s)	781, 785
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	316
SfaNI	GCATC	2 cut(s)	266, 856
SmiMI	CAYNNNNRTG	1 cut(s)	737
SmlI	CTYRAG	2 cut(s)	428, 669
SmoI	CTYRAG	2 cut(s)	428, 669
SpeI	ACTAGT	1 cut(s)	517
Sse9I	AATT	4 cut(s)	78, 137, 696, 715
SspMI	CTAG	5 cut(s)	371, 470, 494, 518, 533
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	2 cut(s)	308, 780
TaaI	ACNGT	3 cut(s)	275, 664, 763
TaiI	ACGT	2 cut(s)	38, 167
TaqI	TCGA	1 cut(s)	527
TasI	AATT	4 cut(s)	78, 137, 696, 715
TatI	WGTACW	1 cut(s)	768
TfiI	GAWTC	1 cut(s)	613
Tru1I	TTAA	4 cut(s)	54, 429, 582, 713
Tru9I	TTAA	4 cut(s)	54, 429, 582, 713
TscAI	CASTG	7 cut(s)	133, 321, 330, 366, 634, 696, 708
TseFI	GTSAC	1 cut(s)	321
TseI	GCWGC	2 cut(s)	113, 726
Tsp45I	GTSAC	1 cut(s)	321
TspDTI	ATGAA	2 cut(s)	193, 372
TspRI	CASTG	7 cut(s)	133, 321, 330, 366, 634, 696, 708
Vha464I	CTTAAG	1 cut(s)	428
VspI	ATTAAT	1 cut(s)	54
XapI	RAATTY	1 cut(s)	137
XcmI	CCANNNNNNNNNTGG	2 cut(s)	342, 634
XspI	CTAG	5 cut(s)	371, 470, 494, 518, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.