Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002107

Physical Location & Seq

Genomic Coordinates Forward (+)

42547842 .. 42548738

Gene Structure 897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008914

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGACATAAACATTAAAGCTCTGAAAACTATCAATCCTTCTTCCCCACCGAAGTCCTATAAGCTTTTTGGTTTTGTGGAAGTTCTAATTTTCCCACAAAACCGAAATGGGAAGTTCATGTCCACCCTCCTATTCATAATTTTCCTTAGTTCTATCCTCTTCGTGAGGAATATCTTCTCAACAAAACCATCAACTACAGAGTTCACCGACCTCGTAACCACTTTAAAACATGATCTCCTATTAGTTGCTGAACTAGAGGGGATTTTCATTCTAGCATTATATATTACCTCGCTGTTGTTATTCTTTGCACTAGCATCAATCTTAGCATCAGGAGTAACTTATGGTGGTAAAGACTTGTTTGTCAATGAACTTCCATCAAGGGTAGTGAAATTATTGAAAAGACCATTTGTCACTTGGTTTTACATAATGCTGCTTCATCTAGGCTACTGTCTGCTTCTTATAGCATTTCTGGTTCCTTATGTTCTATTTTTAAAACCCAAGTTCATACTGTCTGATTGCGCTATACTCGTACTAATTGAAGCTGCACTTTTCGAAACTTATCTTGCTGTTGTTTGGAATTTAGCACTCATTGTTCTGAAAATCGAGGAAAAATGGGACATGGAGGGGCTAGGGAAAGCCGGACAGCTAATCAAAAGATCTAAGCTACGTGGGTTTTTCCTGAATATTCTTTTCAGAGCGTTCTCTGTTGCTGTGATCTATGATTTGAACAAGATTGGCCTTAAAGCATTTTCAGGAAGTGAAATAATAATGCCATTGCTTGCTTTAAACTCCATGTCCTTGATGAGGATGTTGTCGCTAATGGTGTATTCAAATCAATACTATGAGTGCAAGGAGACTCATGGAGAAGAGCTTGAACTGCAAGGAAGTATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

299

Amino Acids

33.84

Weight (kDa)

8.96

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18680 AT2G18690 AT2G18690
malus_domestica	MD16G1263500.v1.1
prunus_persica	Prupe.1G095700_v2.0.a1 Prupe.1G095800_v2.0.a1 Prupe.1G095900_v2.0.a1
pyrus_communis	pycom16g23240
rosa_chinensis	RchiOBHm_Chr4g0404701 RchiOBHm_Chr4g0404711 RchiOBHm_Chr4g0404721
rosa_laevigata	RLG00000008905 RLG00000008906 RLG00000008908 RLG00000008911 RLG00000008912 RLG00000008914
rosa_multiflora	Rmu_sc0001179.1_g000050 Rmu_sc0001179.1_g000051 Rmu_sc0004312.1_g000001 Rmu_sc0005685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017040 Rroxscaffold_5G00348900 Rroxscaffold_5G00348910
rosa_rugosa	Rorug04G0048900 Rorug04G0049000
rosa_samantha	Rh4AG124600 Rh4AG124700 Rh4BG118800 Rh4BG118900 Rh4BG119000 Rh4CG132800 Rh4CG132900 Rh4CG133000 Rh4DG117900 Rh4DG118000 Rh4DG118100 Rh5AG418500 Rh5BG434300 Rh5CG457500 Rh5DG447400
rosa_wichuraiana	Rw4G010090 Rw4G010100 Rw5G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	359
AcsI	RAATTY	1 cut(s)	577
AfaI	GTAC	1 cut(s)	531
AfiI	CCNNNNNNNGG	1 cut(s)	804
AgsI	TTSAA	5 cut(s)	397, 539, 727, 831, 875
AhdI	GACNNNNNGTC	1 cut(s)	407
AluBI	AGCT	6 cut(s)	20, 64, 542, 646, 664, 871
AluI	AGCT	6 cut(s)	20, 64, 542, 646, 664, 871
Alw26I	GTCTC	1 cut(s)	848
AoxI	GGCC	1 cut(s)	736
ApeKI	GCWGC	2 cut(s)	430, 542
ApoI	RAATTY	1 cut(s)	577
Asp700I	GAANNNNTTC	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	521
AsuHPI	GGTGA	1 cut(s)	196
AsuII	TTCGAA	1 cut(s)	552
BbvI	GCAGC	2 cut(s)	417, 529
BccI	CCATC	2 cut(s)	196, 382
BcoDI	GTCTC	1 cut(s)	848
BfaI	CTAG	5 cut(s)	254, 272, 311, 440, 629
BfmI	CTRYAG	1 cut(s)	195
BglII	AGATCT	1 cut(s)	656
BisI	GCNGC	2 cut(s)	431, 543
BlsI	GCNGC	2 cut(s)	432, 544
BmeRI	GACNNNNNGTC	1 cut(s)	407
BmiI	GGNNCC	1 cut(s)	474
BmsI	GCATC	2 cut(s)	323, 335
Bpu14I	TTCGAA	1 cut(s)	552
BsaAI	YACGTR	1 cut(s)	668
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	1 cut(s)	804
Bse3DI	GCAATG	1 cut(s)	773
BseGI	GGATG	1 cut(s)	813
BseLI	CCNNNNNNNGG	1 cut(s)	804
BseMI	GCAATG	1 cut(s)	773
BseXI	GCAGC	2 cut(s)	417, 529
BsgI	GTGCAG	1 cut(s)	528
BshFI	GGCC	1 cut(s)	738
BsiSI	CCGG	1 cut(s)	639
BslFI	GGGAC	1 cut(s)	629
BslI	CCNNNNNNNGG	1 cut(s)	804
BsmAI	GTCTC	1 cut(s)	848
BsmFI	GGGAC	1 cut(s)	629
BsnI	GGCC	1 cut(s)	738
Bsp119I	TTCGAA	1 cut(s)	552
Bsp143I	GATC	3 cut(s)	232, 656, 714
BspANI	GGCC	1 cut(s)	738
BspLI	GGNNCC	1 cut(s)	474
BspQI	GCTCTTC	1 cut(s)	861
BspT104I	TTCGAA	1 cut(s)	552
BsrDI	GCAATG	1 cut(s)	773
BssMI	GATC	3 cut(s)	232, 656, 714
Bst4CI	ACNGT	2 cut(s)	449, 510
Bst6I	CTCTTC	2 cut(s)	164, 861
BstBAI	YACGTR	1 cut(s)	668
BstBI	TTCGAA	1 cut(s)	552
BstC8I	GCNNGC	1 cut(s)	780
BstDEI	CTNAG	3 cut(s)	146, 322, 660
BstENI	CCTNNNNNAGG	1 cut(s)	802
BstF5I	GGATG	1 cut(s)	813
BstHHI	GCGC	1 cut(s)	521
BstKTI	GATC	3 cut(s)	235, 659, 717
BstMAI	GTCTC	1 cut(s)	848
BstMBI	GATC	3 cut(s)	232, 656, 714
BstMWI	GCNNNNNNNGC	1 cut(s)	877
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	2 cut(s)	417, 529
BstX2I	RGATCY	1 cut(s)	656
BstYI	RGATCY	1 cut(s)	656
BsuRI	GGCC	1 cut(s)	738
BtsCI	GGATG	1 cut(s)	813
Cac8I	GCNNGC	1 cut(s)	780
CfoI	GCGC	1 cut(s)	521
Csp6I	GTAC	1 cut(s)	530
CviAII	CATG	5 cut(s)	118, 230, 619, 793, 860
CviQI	GTAC	1 cut(s)	530
DdeI	CTNAG	3 cut(s)	146, 322, 660
DpnI	GATC	3 cut(s)	234, 658, 716
DpnII	GATC	3 cut(s)	232, 656, 714
DraI	TTTAAA	3 cut(s)	225, 492, 786
DrdI	GACNNNNNNGTC	1 cut(s)	359
DriI	GACNNNNNGTC	1 cut(s)	407
DseDI	GACNNNNNNGTC	1 cut(s)	359
Eam1104I	CTCTTC	2 cut(s)	164, 861
Eam1105I	GACNNNNNGTC	1 cut(s)	407
EarI	CTCTTC	2 cut(s)	164, 861
EcoNI	CCTNNNNNAGG	1 cut(s)	802
EcoT22I	ATGCAT	1 cut(s)	894
FaeI	CATG	5 cut(s)	121, 233, 622, 796, 863
FalI	AAGNNNNNCTT	2 cut(s)	531, 563
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	5 cut(s)	117, 229, 618, 792, 859
Fnu4HI	GCNGC	2 cut(s)	431, 543
FokI	GGATG	1 cut(s)	820
Fsp4HI	GCNGC	2 cut(s)	431, 543
FspBI	CTAG	5 cut(s)	254, 272, 311, 440, 629
GlaI	GCGC	1 cut(s)	520
GluI	GCNGC	2 cut(s)	431, 543
HaeIII	GGCC	1 cut(s)	738
HapII	CCGG	1 cut(s)	639
HhaI	GCGC	1 cut(s)	521
Hin1II	CATG	5 cut(s)	121, 233, 622, 796, 863
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	1 cut(s)	856
HpaII	CCGG	1 cut(s)	639
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	2 cut(s)	123, 204
Hpy188I	TCNGA	4 cut(s)	24, 514, 597, 695
Hpy188III	TCNNGA	4 cut(s)	163, 330, 679, 753
Hpy8I	GTNNAC	2 cut(s)	123, 204
HpyAV	CCTTC	1 cut(s)	48
HpyCH4III	ACNGT	2 cut(s)	449, 510
HpyCH4IV	ACGT	1 cut(s)	667
HpyCH4V	TGCA	5 cut(s)	308, 545, 849, 880, 892
HpyF10VI	GCNNNNNNNGC	1 cut(s)	877
HpyF3I	CTNAG	3 cut(s)	146, 322, 660
HpySE526I	ACGT	1 cut(s)	667
Hsp92II	CATG	5 cut(s)	121, 233, 622, 796, 863
HspAI	GCGC	1 cut(s)	519
Kzo9I	GATC	3 cut(s)	232, 656, 714
LguI	GCTCTTC	1 cut(s)	861
LpnPI	CCDG	5 cut(s)	315, 455, 652, 692, 738
Lsp1109I	GCAGC	2 cut(s)	417, 529
LweI	GCATC	2 cut(s)	323, 335
MaeI	CTAG	5 cut(s)	254, 272, 311, 440, 629
MaeII	ACGT	1 cut(s)	667
MaeIII	GTNAC	3 cut(s)	214, 334, 409
MalI	GATC	3 cut(s)	234, 658, 716
MboI	GATC	3 cut(s)	232, 656, 714
MboII	GAAGA	4 cut(s)	33, 151, 166, 878
MflI	RGATCY	1 cut(s)	656
MluCI	AATT	5 cut(s)	87, 138, 389, 534, 577
MlyI	GAGTC	1 cut(s)	850
MnlI	CCTC	9 cut(s)	137, 159, 167, 221, 250, 298, 598, 616, 798
Mph1103I	ATGCAT	1 cut(s)	894
MroXI	GAANNNNTTC	1 cut(s)	173
MseI	TTAA	5 cut(s)	15, 224, 491, 741, 785
MspI	CCGG	1 cut(s)	639
MwoI	GCNNNNNNNGC	1 cut(s)	877
NdeII	GATC	3 cut(s)	232, 656, 714
NlaIII	CATG	5 cut(s)	121, 233, 622, 796, 863
NlaIV	GGNNCC	1 cut(s)	474
NmuCI	GTSAC	1 cut(s)	409
NsiI	ATGCAT	1 cut(s)	894
NspV	TTCGAA	1 cut(s)	552
PciSI	GCTCTTC	1 cut(s)	861
PdmI	GAANNNNTTC	1 cut(s)	173
PkrI	GCNGC	2 cut(s)	432, 544
PleI	GAGTC	1 cut(s)	850
PpsI	GAGTC	1 cut(s)	850
Ppu21I	YACGTR	1 cut(s)	668
PspN4I	GGNNCC	1 cut(s)	474
PsuI	RGATCY	1 cut(s)	656
RsaI	GTAC	1 cut(s)	531
RsaNI	GTAC	1 cut(s)	530
SapI	GCTCTTC	1 cut(s)	861
SaqAI	TTAA	5 cut(s)	15, 224, 491, 741, 785
SatI	GCNGC	2 cut(s)	431, 543
Sau3AI	GATC	3 cut(s)	232, 656, 714
SchI	GAGTC	1 cut(s)	850
SetI	ASST	9 cut(s)	22, 66, 213, 290, 544, 648, 666, 670, 873
SfaNI	GCATC	2 cut(s)	323, 335
SfcI	CTRYAG	1 cut(s)	195
SfuI	TTCGAA	1 cut(s)	552
Sse9I	AATT	5 cut(s)	87, 138, 389, 534, 577
SspI	AATATT	1 cut(s)	685
SspMI	CTAG	5 cut(s)	254, 272, 311, 440, 629
TaaI	ACNGT	2 cut(s)	449, 510
TaiI	ACGT	1 cut(s)	670
TaqI	TCGA	2 cut(s)	552, 603
TasI	AATT	5 cut(s)	87, 138, 389, 534, 577
Tru1I	TTAA	5 cut(s)	15, 224, 491, 741, 785
Tru9I	TTAA	5 cut(s)	15, 224, 491, 741, 785
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	2 cut(s)	430, 542
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	6 cut(s)	106, 124, 256, 381, 425, 493
XagI	CCTNNNNNAGG	1 cut(s)	802
XapI	RAATTY	1 cut(s)	577
XcmI	CCANNNNNNNNNTGG	1 cut(s)	411
XmnI	GAANNNNTTC	1 cut(s)	173
XspI	CTAG	5 cut(s)	254, 272, 311, 440, 629
Zsp2I	ATGCAT	1 cut(s)	894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.