Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002107

Physical Location & Seq

Genomic Coordinates Forward (+)

7585119 .. 7585952

Gene Structure 834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0048900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGTCCTCCAAATCCTTTCTGGTTTTTCTGTTACTGGGTGTGCTGCTTCTGATCACCACCACTTCTTCTCTTGCCGATCACGACGATGATCATAAGAAACCTCCCCACAAACCACCACACAAGCCTCCAGCTTCCCTGGACTTGGACGTAGCTCAACCACGGCCCATTTTGGCCGTCAAGCCTCCTAAGGGACCAGTAAAGCCGCTGCCGCCGCCGGGAAAGAAGCCACCGACTTCCTCACCATTCGATGATGAGGCTGACTCACACAAGCCACCCCACAAGCCACCACCGAAAAAGAAGCCACCGACGTCCTCACCATTTGATGACGAGGCTGACTCCCACAAGCCACCACAGAAGCCACCACCCAAAAAGAAGCCACCGACGTCCTCACCACTTGATGTTATGGATGACGGACACAAGCCACCCCATAAGCCGCCACAGAAGCCACCACACAAACCTCCTACAGCCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

16.98

Weight (kDa)

9.61

Isoelectric Point (pI)

69.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18680 AT2G18690 AT2G18690
malus_domestica	MD16G1263500.v1.1
prunus_persica	Prupe.1G095700_v2.0.a1 Prupe.1G095800_v2.0.a1 Prupe.1G095900_v2.0.a1
pyrus_communis	pycom16g23240
rosa_chinensis	RchiOBHm_Chr4g0404701 RchiOBHm_Chr4g0404711 RchiOBHm_Chr4g0404721
rosa_laevigata	RLG00000008905 RLG00000008906 RLG00000008908 RLG00000008911 RLG00000008912 RLG00000008914
rosa_multiflora	Rmu_sc0001179.1_g000050 Rmu_sc0001179.1_g000051 Rmu_sc0004312.1_g000001 Rmu_sc0005685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017040 Rroxscaffold_5G00348900 Rroxscaffold_5G00348910
rosa_rugosa	Rorug04G0048900 Rorug04G0049000
rosa_samantha	Rh4AG124600 Rh4AG124700 Rh4BG118800 Rh4BG118900 Rh4BG119000 Rh4CG132800 Rh4CG132900 Rh4CG133000 Rh4DG117900 Rh4DG118000 Rh4DG118100 Rh5AG418500 Rh5BG434300 Rh5CG457500 Rh5DG447400
rosa_wichuraiana	Rw4G010090 Rw4G010100 Rw5G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	311, 386
AciI	CCGC	4 cut(s)	203, 209, 212, 434
AcoI	YGGCCR	1 cut(s)	171
AcyI	GRCGYC	2 cut(s)	308, 383
AfiI	CCNNNNNNNGG	3 cut(s)	142, 188, 215
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	2 cut(s)	131, 152
AluI	AGCT	2 cut(s)	131, 152
AoxI	GGCC	2 cut(s)	161, 171
ApeKI	GCWGC	2 cut(s)	43, 205
AspS9I	GGNCC	2 cut(s)	162, 191
AsuC2I	CCSGG	1 cut(s)	216
AsuHPI	GGTGA	4 cut(s)	46, 231, 306, 381
AvaII	GGWCC	1 cut(s)	191
AxyI	CCTNAGG	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	30, 192
BceAI	ACGGC	2 cut(s)	158, 176
BciT130I	CCWGG	1 cut(s)	137
BclI	TGATCA	2 cut(s)	51, 88
BcnI	CCSGG	1 cut(s)	216
BfmI	CTRYAG	1 cut(s)	462
BisI	GCNGC	6 cut(s)	44, 203, 206, 209, 212, 434
BlsI	GCNGC	6 cut(s)	45, 204, 207, 210, 213, 435
Bme1390I	CCNGG	2 cut(s)	137, 216
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	162, 191
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	2 cut(s)	137, 216
BmrI	ACTGGG	1 cut(s)	44
BmuI	ACTGGG	1 cut(s)	44
BplI	GAGNNNNNCTC	4 cut(s)	245, 277, 320, 352
BpmI	CTGGAG	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	216
BsaHI	GRCGYC	2 cut(s)	308, 383
BsaJI	CCNNGG	2 cut(s)	135, 158
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 188, 215
Bse1I	ACTGG	2 cut(s)	39, 194
Bse21I	CCTNAGG	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	2 cut(s)	135, 158
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	3 cut(s)	142, 188, 215
BseNI	ACTGG	2 cut(s)	39, 194
BseXI	GCAGC	2 cut(s)	30, 192
BshFI	GGCC	2 cut(s)	163, 173
BsiSI	CCGG	1 cut(s)	215
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	3 cut(s)	142, 188, 215
BsmFI	GGGAC	1 cut(s)	204
BsnI	GGCC	2 cut(s)	163, 173
Bsp143I	GATC	3 cut(s)	51, 76, 88
BspACI	CCGC	4 cut(s)	203, 209, 212, 434
BspANI	GGCC	2 cut(s)	163, 173
BspLI	GGNNCC	1 cut(s)	192
BsrI	ACTGG	2 cut(s)	39, 194
BssECI	CCNNGG	2 cut(s)	135, 158
BssMI	GATC	3 cut(s)	51, 76, 88
BssNI	GRCGYC	2 cut(s)	308, 383
Bst2UI	CCWGG	1 cut(s)	137
BstACI	GRCGYC	2 cut(s)	308, 383
BstDEI	CTNAG	1 cut(s)	186
BstDSI	CCRYGG	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	412
BstKTI	GATC	3 cut(s)	54, 79, 91
BstMBI	GATC	3 cut(s)	51, 76, 88
BstMWI	GCNNNNNNNGC	3 cut(s)	208, 211, 442
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	2 cut(s)	135, 214
BstSFI	CTRYAG	1 cut(s)	462
BstV1I	GCAGC	2 cut(s)	30, 192
Bsu36I	CCTNAGG	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	163, 173
BtgI	CCRYGG	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	412
Cfr13I	GGNCC	2 cut(s)	162, 191
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	3 cut(s)	53, 78, 90
DpnII	GATC	3 cut(s)	51, 76, 88
EaeI	YGGCCR	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	191
Eco81I	CCTNAGG	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	135
FaiI	YATR	3 cut(s)	93, 404, 429
FaqI	GGGAC	1 cut(s)	204
FbaI	TGATCA	2 cut(s)	51, 88
Fnu4HI	GCNGC	6 cut(s)	44, 203, 206, 209, 212, 434
FokI	GGATG	1 cut(s)	419
Fsp4HI	GCNGC	6 cut(s)	44, 203, 206, 209, 212, 434
GluI	GCNGC	6 cut(s)	44, 203, 206, 209, 212, 434
GsuI	CTGGAG	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	163, 173
HapII	CCGG	1 cut(s)	215
Hin1I	GRCGYC	2 cut(s)	308, 383
HinfI	GANTC	2 cut(s)	260, 335
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	4 cut(s)	46, 231, 306, 381
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	1 cut(s)	80
Hpy99I	CGWCG	3 cut(s)	86, 310, 385
HpyCH4IV	ACGT	3 cut(s)	147, 308, 383
HpyF10VI	GCNNNNNNNGC	3 cut(s)	208, 211, 442
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	3 cut(s)	147, 308, 383
Hsp92I	GRCGYC	2 cut(s)	308, 383
Ksp22I	TGATCA	2 cut(s)	51, 88
Kzo9I	GATC	3 cut(s)	51, 76, 88
LpnPI	CCDG	7 cut(s)	5, 20, 122, 141, 149, 207, 228
Lsp1109I	GCAGC	2 cut(s)	30, 192
MaeII	ACGT	3 cut(s)	147, 308, 383
MaeIII	GTNAC	1 cut(s)	30
MalI	GATC	3 cut(s)	53, 78, 90
MboI	GATC	3 cut(s)	51, 76, 88
MboII	GAAGA	1 cut(s)	57
MlyI	GAGTC	2 cut(s)	254, 329
MslI	CAYNNNNRTG	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	205
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	2 cut(s)	137, 216
MvaI	CCWGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	3 cut(s)	208, 211, 442
NciI	CCSGG	1 cut(s)	216
NdeII	GATC	3 cut(s)	51, 76, 88
NlaIV	GGNNCC	1 cut(s)	192
PkrI	GCNGC	6 cut(s)	45, 204, 207, 210, 213, 435
PleI	GAGTC	2 cut(s)	254, 329
PpsI	GAGTC	2 cut(s)	254, 329
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	2 cut(s)	162, 191
RseI	CAYNNNNRTG	1 cut(s)	84
SatI	GCNGC	6 cut(s)	44, 203, 206, 209, 212, 434
Sau3AI	GATC	3 cut(s)	51, 76, 88
Sau96I	GGNCC	2 cut(s)	162, 191
SchI	GAGTC	2 cut(s)	254, 329
ScrFI	CCNGG	2 cut(s)	137, 216
SetI	ASST	7 cut(s)	103, 133, 150, 154, 311, 386, 460
SfcI	CTRYAG	1 cut(s)	462
SinI	GGWCC	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	84
SsiI	CCGC	4 cut(s)	203, 209, 212, 434
StyD4I	CCNGG	2 cut(s)	135, 214
TaiI	ACGT	3 cut(s)	150, 311, 386
TaqI	TCGA	1 cut(s)	246
TauI	GCSGC	4 cut(s)	205, 211, 214, 436
TseI	GCWGC	2 cut(s)	43, 205
TspGWI	ACGGA	1 cut(s)	426
VpaK11BI	GGWCC	1 cut(s)	191
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
ZraI	GACGTC	2 cut(s)	309, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.