Rh5AG418500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0002107
Physical Location & Seq
Forward (+)
72039287 .. 72039640
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG418500.1

Sequence Viewer

Length: 354 bp
ATGTCTATCAACATTCATGTACTAGTGGAGGCACTGGGAAAAGCTGGACAGCTTATTAAGGGATCAAAGCTACGAGGATTTTTTCTGAATGTTGTTATAGCCACCTCCTTGTGGTTGTTATTTGTTTTGTACAGGATTGTCGCTAAAGCTATACCAGTAAAAGCAGTGATAATTCCATTGCTCCTCTTAAATTGTATCAGCTGCCTCATAGCTATGGTTTCGCGAATGGCATACACAGTCCTGTACTATGAGTCCAAGGCGACTCATGGTGAAGAGCTTGAACGTACTGCAAGGAAGCTTGGACATGCTAAGGTTACCTCTGATACCCCTCTTATCAATGTAGATGCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.86

Weight (kDa)

9.59

Isoelectric Point (pI)

23.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 223
AclWI GGATC 1 cut(s) 70
AfaI GTAC 4 cut(s) 21, 131, 245, 286
AfiI CCNNNNNNNGG 1 cut(s) 111
AgsI TTSAA 1 cut(s) 281
AhlI ACTAGT 1 cut(s) 22
AluBI AGCT 8 cut(s) 44, 52, 70, 149, 201, 212, 277, 298
AluI AGCT 8 cut(s) 44, 52, 70, 149, 201, 212, 277, 298
AlwI GGATC 1 cut(s) 70
ApeKI GCWGC 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 281
BbvI GCAGC 1 cut(s) 188
BcuI ACTAGT 1 cut(s) 22
BfaI CTAG 1 cut(s) 23
BisI GCNGC 1 cut(s) 202
BlsI GCNGC 1 cut(s) 203
BmrI ACTGGG 1 cut(s) 44
BmsI GCATC 1 cut(s) 334
BmuI ACTGGG 1 cut(s) 44
Bpu10I CCTNAGC 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 255
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse1I ACTGG 2 cut(s) 39, 155
Bse3DI GCAATG 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMI GCAATG 1 cut(s) 176
BseNI ACTGG 2 cut(s) 39, 155
BseRI GAGGAG 1 cut(s) 173
BseXI GCAGC 1 cut(s) 188
Bsh1236I CGCG 1 cut(s) 223
BslI CCNNNNNNNGG 1 cut(s) 111
Bsp1407I TGTACA 1 cut(s) 129
Bsp143I GATC 1 cut(s) 62
Bsp68I TCGCGA 1 cut(s) 223
BspFNI CGCG 1 cut(s) 223
BspPI GGATC 1 cut(s) 70
BspQI GCTCTTC 1 cut(s) 267
BsrDI GCAATG 1 cut(s) 176
BsrGI TGTACA 1 cut(s) 129
BsrI ACTGG 2 cut(s) 39, 155
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 1 cut(s) 62
BssT1I CCWWGG 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 238
Bst6I CTCTTC 1 cut(s) 267
BstAUI TGTACA 1 cut(s) 129
BstDEI CTNAG 1 cut(s) 309
BstEII GGTNACC 1 cut(s) 313
BstFNI CGCG 1 cut(s) 223
BstKTI GATC 1 cut(s) 65
BstMBI GATC 1 cut(s) 62
BstNSI RCATGY 1 cut(s) 308
BstPI GGTNACC 1 cut(s) 313
BstUI CGCG 1 cut(s) 223
BstV1I GCAGC 1 cut(s) 188
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 32, 171
BtuMI TCGCGA 1 cut(s) 223
Csp6I GTAC 4 cut(s) 20, 130, 244, 285
CviAII CATG 3 cut(s) 17, 266, 305
CviJI RGCY 9 cut(s) 44, 52, 70, 101, 149, 201, 212, 277, 298
CviKI_1 RGCY 9 cut(s) 44, 52, 70, 101, 149, 201, 212, 277, 298
CviQI GTAC 4 cut(s) 20, 130, 244, 285
DdeI CTNAG 1 cut(s) 309
DpnI GATC 1 cut(s) 64
DpnII GATC 1 cut(s) 62
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 255
Eco91I GGTNACC 1 cut(s) 313
EcoO65I GGTNACC 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 3 cut(s) 20, 269, 308
FaiI YATR 9 cut(s) 18, 98, 152, 209, 215, 232, 249, 267, 306
FatI CATG 3 cut(s) 16, 265, 304
Fnu4HI GCNGC 1 cut(s) 202
Fsp4HI GCNGC 1 cut(s) 202
FspBI CTAG 1 cut(s) 23
GluI GCNGC 1 cut(s) 202
Hin1II CATG 3 cut(s) 20, 269, 308
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 2 cut(s) 251, 262
HphI GGTGA 1 cut(s) 281
Hpy188I TCNGA 2 cut(s) 87, 322
Hpy188III TCNNGA 1 cut(s) 222
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 2 cut(s) 290, 347
HpyF3I CTNAG 1 cut(s) 309
HpySE526I ACGT 1 cut(s) 283
Hsp92II CATG 3 cut(s) 20, 269, 308
Kzo9I GATC 1 cut(s) 62
LguI GCTCTTC 1 cut(s) 267
LmnI GCTCC 1 cut(s) 186
LpnPI CCDG 5 cut(s) 20, 30, 118, 168, 254
Lsp1109I GCAGC 1 cut(s) 188
LweI GCATC 1 cut(s) 334
MaeI CTAG 1 cut(s) 23
MaeII ACGT 1 cut(s) 283
MaeIII GTNAC 1 cut(s) 313
MalI GATC 1 cut(s) 64
MboI GATC 1 cut(s) 62
MboII GAAGA 1 cut(s) 284
MluCI AATT 3 cut(s) 171, 190, 348
MlyI GAGTC 2 cut(s) 256, 260
MnlI CCTC 7 cut(s) 22, 68, 115, 194, 215, 328, 339
MseI TTAA 2 cut(s) 57, 188
MslI CAYNNNNRTG 1 cut(s) 212
MspA1I CMGCKG 1 cut(s) 201
MvnI CGCG 1 cut(s) 223
NdeII GATC 1 cut(s) 62
NlaIII CATG 3 cut(s) 20, 269, 308
NruI TCGCGA 1 cut(s) 223
NspI RCATGY 1 cut(s) 308
PciSI GCTCTTC 1 cut(s) 267
PkrI GCNGC 1 cut(s) 203
PleI GAGTC 2 cut(s) 256, 259
PpsI GAGTC 2 cut(s) 256, 259
PspEI GGTNACC 1 cut(s) 313
PvuII CAGCTG 1 cut(s) 201
RruI TCGCGA 1 cut(s) 223
RsaI GTAC 4 cut(s) 21, 131, 245, 286
RsaNI GTAC 4 cut(s) 20, 130, 244, 285
RseI CAYNNNNRTG 1 cut(s) 212
SapI GCTCTTC 1 cut(s) 267
SaqAI TTAA 2 cut(s) 57, 188
SatI GCNGC 1 cut(s) 202
Sau3AI GATC 1 cut(s) 62
SchI GAGTC 2 cut(s) 256, 260
SfaNI GCATC 1 cut(s) 334
SmiMI CAYNNNNRTG 1 cut(s) 212
SpeI ACTAGT 1 cut(s) 22
Sse9I AATT 3 cut(s) 171, 190, 348
SspMI CTAG 1 cut(s) 23
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 238
TaiI ACGT 1 cut(s) 286
TasI AATT 3 cut(s) 171, 190, 348
TatI WGTACW 3 cut(s) 19, 129, 243
Tru1I TTAA 2 cut(s) 57, 188
Tru9I TTAA 2 cut(s) 57, 188
TscAI CASTG 2 cut(s) 39, 171
TseI GCWGC 1 cut(s) 201
TspDTI ATGAA 1 cut(s) 5
TspRI CASTG 2 cut(s) 39, 171
XceI RCATGY 1 cut(s) 308
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.