Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002107

Physical Location & Seq

Genomic Coordinates Reverse (-)

7571276 .. 7574391

Gene Structure 3116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G095900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGGTCTTTTATGCTTTTGGAATTGGTGGGAACTTTGATGGAATCGCAGAAACTTTTCTTCAGAAATGTTAAGCTCATGTCTTGCATCTTCCTGCTCATAATTTCTCTTAGCTCTATCCTCTTTTTGAGTAATATGCTGTCCATTAAACCATCAATCACTGATTTTACCCTCAAGGCAAACCTTCTAGCCATGAACATCGGCACCCCTGAATTCGCAAACCTTCTGAATACTTTGAAAGGCGACCTCCGATTATTTGTTGGACTAGAGTGGATTTTTGTTTTCATATTCTGTTTTTTCTCTTTGTTCTTTGCAACAGCTTCAATCTTAGCATCGGCAGTAACATATCGTGGAAAAGACATGTCTATCAAGGAACTTCTATCGAGGGCCGTGAAATCACTGAAAAGACCGTTTCTTACTTGGTTTTACATAACCCTTCTTCATCTGGGCTATTGTCTATTTCTCATAACCTTTCTGGTTCCTTTGGTTGTGATTTTCGATCTTACGTTCACTATGCCTTCTTTATTATCTATAATCATATTCCTCCTAGCTCTAGTTTTCGAAGCTTATCTAGCTGTTGTTTGGAATTTAGCACTCGTTGTTTCGGTACTCGAGGAAATGTGTGGAATTGAGGCACTTGGGAAGGCTGGACAGCTCATCAAAGGATTGAAGATGCGCGGATTTTTCCTAAATCTTTTGTTTGGAGCACTCTCTCTTCCTGTGTTCTATGGTGCGCACAAGTTTGGCAAAACAGTCATGTCATCAAATGCTGCCATGATTCCATTGCTCCTCCTGAATTCGATATCCTGCCTGATCGGAATGTTTAAGCTCATGGCATACACAGTCCTCTATCACGATTGCAAGGCAACTCATGGAGAAGAACTTGAAATGCAAGGAGGCACTGAATATACTAAAGTGGCCTTTACCCCACTTATCAGTGCAGATTTACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

318

Amino Acids

35.38

Weight (kDa)

8.67

Isoelectric Point (pI)

29.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18680 AT2G18690 AT2G18690
malus_domestica	MD16G1263500.v1.1
prunus_persica	Prupe.1G095700_v2.0.a1 Prupe.1G095800_v2.0.a1 Prupe.1G095900_v2.0.a1
pyrus_communis	pycom16g23240
rosa_chinensis	RchiOBHm_Chr4g0404701 RchiOBHm_Chr4g0404711 RchiOBHm_Chr4g0404721
rosa_laevigata	RLG00000008905 RLG00000008906 RLG00000008908 RLG00000008911 RLG00000008912 RLG00000008914
rosa_multiflora	Rmu_sc0001179.1_g000050 Rmu_sc0001179.1_g000051 Rmu_sc0004312.1_g000001 Rmu_sc0005685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017040 Rroxscaffold_5G00348900 Rroxscaffold_5G00348910
rosa_rugosa	Rorug04G0048900 Rorug04G0049000
rosa_samantha	Rh4AG124600 Rh4AG124700 Rh4BG118800 Rh4BG118900 Rh4BG119000 Rh4CG132800 Rh4CG132900 Rh4CG133000 Rh4DG117900 Rh4DG118000 Rh4DG118100 Rh5AG418500 Rh5BG434300 Rh5CG457500 Rh5DG447400
rosa_wichuraiana	Rw4G010090 Rw4G010100 Rw5G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	735
AccB1I	GGYRCC	1 cut(s)	203
AccII	CGCG	1 cut(s)	678
AciI	CCGC	1 cut(s)	678
AcsI	RAATTY	3 cut(s)	212, 586, 796
AcuI	CTGAAG	1 cut(s)	46
AfaI	GTAC	1 cut(s)	609
AflIII	ACRYGT	1 cut(s)	360
AgsI	TTSAA	4 cut(s)	238, 324, 670, 887
AluBI	AGCT	8 cut(s)	76, 114, 320, 551, 566, 575, 655, 829
AluI	AGCT	8 cut(s)	76, 114, 320, 551, 566, 575, 655, 829
Alw21I	GWGCWC	1 cut(s)	709
Ama87I	CYCGRG	1 cut(s)	611
AoxI	GGCC	2 cut(s)	387, 918
ApeKI	GCWGC	1 cut(s)	770
ApoI	RAATTY	3 cut(s)	212, 586, 796
Asp700I	GAANNNNTTC	1 cut(s)	56
AspLEI	GCGC	2 cut(s)	678, 736
AspS9I	GGNCC	1 cut(s)	387
AsuII	TTCGAA	1 cut(s)	561
AvaI	CYCGRG	1 cut(s)	611
BanI	GGYRCC	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	709
BbvI	GCAGC	1 cut(s)	757
BccI	CCATC	2 cut(s)	34, 160
BceAI	ACGGC	1 cut(s)	374
BfaI	CTAG	5 cut(s)	188, 266, 548, 554, 572
BisI	GCNGC	1 cut(s)	771
BlsI	GCNGC	1 cut(s)	772
BmeT110I	CYCGRG	1 cut(s)	611
BmgT120I	GGNCC	1 cut(s)	387
BmiI	GGNNCC	2 cut(s)	205, 480
BmsI	GCATC	3 cut(s)	96, 341, 663
Bpu14I	TTCGAA	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	782
BseMI	GCAATG	1 cut(s)	782
BseRI	GAGGAG	1 cut(s)	779
BseXI	GCAGC	1 cut(s)	757
Bsh1236I	CGCG	1 cut(s)	678
BshFI	GGCC	2 cut(s)	389, 920
BshNI	GGYRCC	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	709
BsiHKCI	CYCGRG	1 cut(s)	611
BsnI	GGCC	2 cut(s)	389, 920
BsoBI	CYCGRG	1 cut(s)	611
Bsp119I	TTCGAA	1 cut(s)	561
Bsp1286I	GDGCHC	1 cut(s)	709
Bsp143I	GATC	2 cut(s)	499, 813
BspACI	CCGC	1 cut(s)	678
BspANI	GGCC	2 cut(s)	389, 920
BspFNI	CGCG	1 cut(s)	678
BspLI	GGNNCC	2 cut(s)	205, 480
BspT104I	TTCGAA	1 cut(s)	561
BspT107I	GGYRCC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	782
BssMI	GATC	2 cut(s)	499, 813
Bst4CI	ACNGT	3 cut(s)	411, 754, 844
Bst6I	CTCTTC	1 cut(s)	720
BstBI	TTCGAA	1 cut(s)	561
BstDEI	CTNAG	2 cut(s)	110, 328
BstFNI	CGCG	1 cut(s)	678
BstHHI	GCGC	2 cut(s)	678, 736
BstKTI	GATC	2 cut(s)	502, 816
BstMBI	GATC	2 cut(s)	499, 813
BstMWI	GCNNNNNNNGC	1 cut(s)	572
BstNSI	RCATGY	1 cut(s)	364
BstUI	CGCG	1 cut(s)	678
BstV1I	GCAGC	1 cut(s)	757
BsuRI	GGCC	2 cut(s)	389, 920
BtsIMutI	CAGTG	4 cut(s)	159, 398, 900, 943
CfoI	GCGC	2 cut(s)	678, 736
Cfr13I	GGNCC	1 cut(s)	387
Csp6I	GTAC	1 cut(s)	608
CviAII	CATG	8 cut(s)	79, 193, 361, 757, 775, 832, 872, 951
CviQI	GTAC	1 cut(s)	608
DdeI	CTNAG	2 cut(s)	110, 328
DpnI	GATC	2 cut(s)	501, 815
DpnII	GATC	2 cut(s)	499, 813
Eam1104I	CTCTTC	1 cut(s)	720
EarI	CTCTTC	1 cut(s)	720
Eco32I	GATATC	1 cut(s)	804
Eco57I	CTGAAG	1 cut(s)	46
Eco88I	CYCGRG	1 cut(s)	611
EcoRI	GAATTC	2 cut(s)	212, 796
EcoRV	GATATC	1 cut(s)	804
FaeI	CATG	8 cut(s)	82, 196, 364, 760, 778, 835, 875, 954
FatI	CATG	8 cut(s)	78, 192, 360, 756, 774, 831, 871, 950
Fnu4HI	GCNGC	1 cut(s)	771
Fsp4HI	GCNGC	1 cut(s)	771
FspAI	RTGCGCAY	1 cut(s)	735
FspBI	CTAG	5 cut(s)	188, 266, 548, 554, 572
FspI	TGCGCA	1 cut(s)	735
GlaI	GCGC	2 cut(s)	677, 735
GluI	GCNGC	1 cut(s)	771
HaeIII	GGCC	2 cut(s)	389, 920
HhaI	GCGC	2 cut(s)	678, 736
Hin1II	CATG	8 cut(s)	82, 196, 364, 760, 778, 835, 875, 954
Hin6I	GCGC	2 cut(s)	676, 734
HinP1I	GCGC	2 cut(s)	676, 734
HindIII	AAGCTT	1 cut(s)	564
HinfI	GANTC	2 cut(s)	44, 778
Hpy166II	GTNNAC	1 cut(s)	510
Hpy188I	TCNGA	4 cut(s)	65, 228, 251, 818
Hpy188III	TCNNGA	2 cut(s)	793, 854
Hpy8I	GTNNAC	1 cut(s)	510
HpyAV	CCTTC	5 cut(s)	194, 233, 446, 528, 637
HpyCH4III	ACNGT	3 cut(s)	411, 754, 844
HpyCH4IV	ACGT	1 cut(s)	506
HpyCH4V	TGCA	5 cut(s)	87, 314, 861, 892, 941
HpyF10VI	GCNNNNNNNGC	1 cut(s)	572
HpyF3I	CTNAG	2 cut(s)	110, 328
HpySE526I	ACGT	1 cut(s)	506
Hsp92II	CATG	8 cut(s)	82, 196, 364, 760, 778, 835, 875, 954
HspAI	GCGC	2 cut(s)	676, 734
Kzo9I	GATC	2 cut(s)	499, 813
LmnI	GCTCC	2 cut(s)	704, 792
LpnPI	CCDG	9 cut(s)	107, 222, 431, 461, 633, 732, 806, 820, 824
Lsp1109I	GCAGC	1 cut(s)	757
LweI	GCATC	3 cut(s)	96, 341, 663
MaeI	CTAG	5 cut(s)	188, 266, 548, 554, 572
MaeII	ACGT	1 cut(s)	506
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	2 cut(s)	501, 815
MboI	GATC	2 cut(s)	499, 813
MboII	GAAGA	6 cut(s)	52, 82, 431, 682, 707, 890
MhlI	GDGCHC	1 cut(s)	709
MluCI	AATT	6 cut(s)	23, 102, 212, 586, 627, 796
MmeI	TCCRAC	1 cut(s)	241
MroXI	GAANNNNTTC	1 cut(s)	56
MseI	TTAA	3 cut(s)	72, 147, 825
MvnI	CGCG	1 cut(s)	678
MwoI	GCNNNNNNNGC	1 cut(s)	572
NdeII	GATC	2 cut(s)	499, 813
NlaIII	CATG	8 cut(s)	82, 196, 364, 760, 778, 835, 875, 954
NlaIV	GGNNCC	2 cut(s)	205, 480
NsbI	TGCGCA	1 cut(s)	735
NspI	RCATGY	1 cut(s)	364
NspV	TTCGAA	1 cut(s)	561
PaeR7I	CTCGAG	1 cut(s)	611
PciI	ACATGT	1 cut(s)	360
PdmI	GAANNNNTTC	1 cut(s)	56
PfeI	GAWTC	2 cut(s)	44, 778
PkrI	GCNGC	1 cut(s)	772
PscI	ACATGT	1 cut(s)	360
PspN4I	GGNNCC	2 cut(s)	205, 480
PspPI	GGNCC	1 cut(s)	387
PspXI	VCTCGAGB	1 cut(s)	611
RsaI	GTAC	1 cut(s)	609
RsaNI	GTAC	1 cut(s)	608
SaqAI	TTAA	3 cut(s)	72, 147, 825
SatI	GCNGC	1 cut(s)	771
Sau3AI	GATC	2 cut(s)	499, 813
Sau96I	GGNCC	1 cut(s)	387
SduI	GDGCHC	1 cut(s)	709
SfaNI	GCATC	3 cut(s)	96, 341, 663
Sfr274I	CTCGAG	1 cut(s)	611
SfuI	TTCGAA	1 cut(s)	561
SlaI	CTCGAG	1 cut(s)	611
SmlI	CTYRAG	2 cut(s)	173, 611
SmoI	CTYRAG	2 cut(s)	173, 611
Sse9I	AATT	6 cut(s)	23, 102, 212, 586, 627, 796
SsiI	CCGC	1 cut(s)	678
SspMI	CTAG	5 cut(s)	188, 266, 548, 554, 572
TaaI	ACNGT	3 cut(s)	411, 754, 844
TaiI	ACGT	1 cut(s)	509
TaqI	TCGA	5 cut(s)	383, 498, 561, 612, 800
TasI	AATT	6 cut(s)	23, 102, 212, 586, 627, 796
TfiI	GAWTC	2 cut(s)	44, 778
Tru1I	TTAA	3 cut(s)	72, 147, 825
Tru9I	TTAA	3 cut(s)	72, 147, 825
TscAI	CASTG	4 cut(s)	166, 405, 907, 943
TseI	GCWGC	1 cut(s)	770
TspDTI	ATGAA	3 cut(s)	209, 274, 431
TspRI	CASTG	4 cut(s)	166, 405, 907, 943
XapI	RAATTY	3 cut(s)	212, 586, 796
XceI	RCATGY	1 cut(s)	364
XhoI	CTCGAG	1 cut(s)	611
XmnI	GAANNNNTTC	1 cut(s)	56
XspI	CTAG	5 cut(s)	188, 266, 548, 554, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.