Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002107

Physical Location & Seq

Genomic Coordinates Forward (+)

42486092 .. 42487045

Gene Structure 954 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008905

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAAGTTTTACATGCTTTTGGATTTTCTGGGACTCCTAAGGGAATCCCACAAGCTTTTCGTCCGAAATGGGAAGGCCATGTCCTCCATCACCCTTCTCATAATACTTGTTACTTCTTTCCTGTTGGTGATCCATATCTACTCCCTCAAACCAATAATTACTGATATTACAATCAAGGCAAACTTCCTGGCAGCTACAAGTCCCACTGGTGCTGAATTCACTCGTCTTCTAACTGCCATGATGTACGACTTCAGAGTATATCTTGGACTACAATGGATTTTCATTTTGGGGTTCTCTTTTACCTCATTCTATTTTGCAACAGCCTCAATCTTAGCATCAGCAGTATCATACTGTGGAAAAGACTTGTCCATCAAGGAACTTCTACCAAGGGCACTGAGGTCACTGAAAAGACCATTTGTTACATGGTTTTACATAACACTGCTTGATCTAGGCTACTTATCATTTCTCTTTGCATTTGTTTTTCCTTTAGTGCTGATTTTCAATCTTAAGCTCACCATATCTGCTTTCACTATAGTCGCATCCATTCTAGCTCTAGTTGTCAGAACTTATCTCGCTGTTGTGTGGAACTTAGCACTAGTTGTTTCGATACTAGAAGAAAAATGTGGCATTGAGGCACTTGGGAAAGCTGGACAGCTTATTAAGGGATCAAAGCTGCGAGGGTTTTTTCTGAATCTTGTTATAGCCACTGCCTCGTCGGTGTTAATTGTTTTGTTTAGGACTGTTGCTAAAGCTATGCCAGTAAAAGCACTGATAATTCCATTGCTCCTGTTAAATTGTATCGGCTGCCTCATAACTATGGTTTTGCTAATGGCATACACAGTGCTGTACTATGAGTCCAAGGCGACTCATGGAGAAGAGCTAGAACTGCAAGGAAGCTTGGAATATGCTAAGATTTCCTCTGCTACCCCTCTTATCAATGCAGATGCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

318

Amino Acids

35.21

Weight (kDa)

9.41

Isoelectric Point (pI)

33.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18680 AT2G18690 AT2G18690
malus_domestica	MD16G1263500.v1.1
prunus_persica	Prupe.1G095700_v2.0.a1 Prupe.1G095800_v2.0.a1 Prupe.1G095900_v2.0.a1
pyrus_communis	pycom16g23240
rosa_chinensis	RchiOBHm_Chr4g0404701 RchiOBHm_Chr4g0404711 RchiOBHm_Chr4g0404721
rosa_laevigata	RLG00000008905 RLG00000008906 RLG00000008908 RLG00000008911 RLG00000008912 RLG00000008914
rosa_multiflora	Rmu_sc0001179.1_g000050 Rmu_sc0001179.1_g000051 Rmu_sc0004312.1_g000001 Rmu_sc0005685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017040 Rroxscaffold_5G00348900 Rroxscaffold_5G00348910
rosa_rugosa	Rorug04G0048900 Rorug04G0049000
rosa_samantha	Rh4AG124600 Rh4AG124700 Rh4BG118800 Rh4BG118900 Rh4BG119000 Rh4CG132800 Rh4CG132900 Rh4CG133000 Rh4DG117900 Rh4DG118000 Rh4DG118100 Rh5AG418500 Rh5BG434300 Rh5CG457500 Rh5DG447400
rosa_wichuraiana	Rw4G010090 Rw4G010100 Rw5G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	124, 673
AcsI	RAATTY	1 cut(s)	215
AcuI	CTGAAG	1 cut(s)	235
AfaI	GTAC	2 cut(s)	245, 848
AflII	CTTAAG	1 cut(s)	506
AgsI	TTSAA	1 cut(s)	502
AhlI	ACTAGT	1 cut(s)	595
AjnI	CCWGG	1 cut(s)	186
AlwI	GGATC	2 cut(s)	124, 673
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	3 cut(s)	191, 673, 804
ApoI	RAATTY	1 cut(s)	215
AsuHPI	GGTGA	3 cut(s)	82, 139, 505
AxyI	CCTNAGG	1 cut(s)	38
BaeGI	GKGCMC	1 cut(s)	394
BbsI	GAAGAC	1 cut(s)	218
BbvI	GCAGC	3 cut(s)	203, 660, 791
BccI	CCATC	2 cut(s)	95, 377
BciT130I	CCWGG	1 cut(s)	188
BcuI	ACTAGT	1 cut(s)	595
BfaI	CTAG	6 cut(s)	449, 548, 554, 596, 611, 881
BfmI	CTRYAG	1 cut(s)	531
BfrI	CTTAAG	1 cut(s)	506
BisI	GCNGC	3 cut(s)	192, 674, 805
BlsI	GCNGC	3 cut(s)	193, 675, 806
Bme1390I	CCNGG	1 cut(s)	188
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	3 cut(s)	344, 548, 934
BpiI	GAAGAC	1 cut(s)	218
BsaBI	GATNNNNATC	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	386, 858
Bse1I	ACTGG	2 cut(s)	211, 758
Bse21I	CCTNAGG	1 cut(s)	38
Bse3DI	GCAATG	1 cut(s)	779
Bse8I	GATNNNNATC	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	2 cut(s)	386, 858
BseGI	GGATG	1 cut(s)	539
BseJI	GATNNNNATC	1 cut(s)	134
BseMI	GCAATG	1 cut(s)	779
BseMII	CTCAG	1 cut(s)	386
BseNI	ACTGG	2 cut(s)	211, 758
BseSI	GKGCMC	1 cut(s)	394
BseXI	GCAGC	3 cut(s)	203, 660, 791
BshFI	GGCC	1 cut(s)	77
BslFI	GGGAC	2 cut(s)	45, 186
BsmFI	GGGAC	2 cut(s)	45, 186
BsnI	GGCC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp143I	GATC	3 cut(s)	129, 445, 665
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	387
BspPI	GGATC	2 cut(s)	124, 673
BspQI	GCTCTTC	1 cut(s)	870
BspTI	CTTAAG	1 cut(s)	506
BsrDI	GCAATG	1 cut(s)	779
BsrI	ACTGG	2 cut(s)	211, 758
BssECI	CCNNGG	2 cut(s)	386, 858
BssMI	GATC	3 cut(s)	129, 445, 665
BssT1I	CCWWGG	2 cut(s)	386, 858
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	3 cut(s)	353, 742, 841
Bst6I	CTCTTC	1 cut(s)	870
BstAFI	CTTAAG	1 cut(s)	506
BstDEI	CTNAG	5 cut(s)	38, 331, 395, 589, 909
BstF5I	GGATG	1 cut(s)	539
BstKTI	GATC	3 cut(s)	132, 448, 668
BstMBI	GATC	3 cut(s)	129, 445, 665
BstMWI	GCNNNNNNNGC	1 cut(s)	886
BstNI	CCWGG	1 cut(s)	188
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	186
BstSFI	CTRYAG	1 cut(s)	531
BstSLI	GKGCMC	1 cut(s)	394
BstV1I	GCAGC	3 cut(s)	203, 660, 791
BstV2I	GAAGAC	1 cut(s)	218
Bsu36I	CCTNAGG	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	539
BtsI	GCAGTG	2 cut(s)	437, 705
BtsIMutI	CAGTG	7 cut(s)	204, 392, 401, 437, 705, 767, 846
Csp6I	GTAC	2 cut(s)	244, 847
CviAII	CATG	5 cut(s)	13, 79, 238, 423, 869
CviQI	GTAC	2 cut(s)	244, 847
DdeI	CTNAG	5 cut(s)	38, 331, 395, 589, 909
DpnI	GATC	3 cut(s)	131, 447, 667
DpnII	GATC	3 cut(s)	129, 445, 665
Eam1104I	CTCTTC	1 cut(s)	870
EarI	CTCTTC	1 cut(s)	870
Eco130I	CCWWGG	2 cut(s)	386, 858
Eco57I	CTGAAG	1 cut(s)	235
Eco81I	CCTNAGG	1 cut(s)	38
EcoRI	GAATTC	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	186
EcoT14I	CCWWGG	2 cut(s)	386, 858
ErhI	CCWWGG	2 cut(s)	386, 858
FaeI	CATG	5 cut(s)	16, 82, 241, 426, 872
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	2 cut(s)	45, 186
FatI	CATG	5 cut(s)	12, 78, 237, 422, 868
Fnu4HI	GCNGC	3 cut(s)	192, 674, 805
FokI	GGATG	1 cut(s)	526
Fsp4HI	GCNGC	3 cut(s)	192, 674, 805
FspBI	CTAG	6 cut(s)	449, 548, 554, 596, 611, 881
GluI	GCNGC	3 cut(s)	192, 674, 805
HaeIII	GGCC	1 cut(s)	77
Hin1II	CATG	5 cut(s)	16, 82, 241, 426, 872
HindIII	AAGCTT	2 cut(s)	53, 895
HinfI	GANTC	5 cut(s)	33, 44, 691, 854, 865
HphI	GGTGA	3 cut(s)	82, 139, 505
Hpy188I	TCNGA	4 cut(s)	65, 254, 563, 690
Hpy99I	CGWCG	1 cut(s)	718
HpyAV	CCTTC	2 cut(s)	67, 104
HpyCH4III	ACNGT	3 cut(s)	353, 742, 841
HpyCH4V	TGCA	5 cut(s)	317, 473, 889, 941, 947
HpyF10VI	GCNNNNNNNGC	1 cut(s)	886
HpyF3I	CTNAG	5 cut(s)	38, 331, 395, 589, 909
Hsp92II	CATG	5 cut(s)	16, 82, 241, 426, 872
Kzo9I	GATC	3 cut(s)	129, 445, 665
LguI	GCTCTTC	1 cut(s)	870
LmnI	GCTCC	1 cut(s)	789
LpnPI	CCDG	8 cut(s)	14, 134, 173, 192, 200, 633, 771, 800
Lsp1109I	GCAGC	3 cut(s)	203, 660, 791
LweI	GCATC	3 cut(s)	344, 548, 934
MaeI	CTAG	6 cut(s)	449, 548, 554, 596, 611, 881
MaeIII	GTNAC	3 cut(s)	109, 399, 418
MalI	GATC	3 cut(s)	131, 447, 667
MboI	GATC	3 cut(s)	129, 445, 665
MboII	GAAGA	3 cut(s)	218, 626, 887
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	5 cut(s)	156, 215, 723, 774, 793
MlyI	GAGTC	3 cut(s)	27, 859, 863
MseI	TTAA	4 cut(s)	507, 660, 722, 791
MslI	CAYNNNNRTG	1 cut(s)	815
MspCI	CTTAAG	1 cut(s)	506
MspR9I	CCNGG	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	886
NdeII	GATC	3 cut(s)	129, 445, 665
NlaIII	CATG	5 cut(s)	16, 82, 241, 426, 872
NmuCI	GTSAC	1 cut(s)	399
NspI	RCATGY	1 cut(s)	16
PciSI	GCTCTTC	1 cut(s)	870
PfeI	GAWTC	2 cut(s)	44, 691
PkrI	GCNGC	3 cut(s)	193, 675, 806
PleI	GAGTC	3 cut(s)	27, 859, 862
PpsI	GAGTC	3 cut(s)	27, 859, 862
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
RsaI	GTAC	2 cut(s)	245, 848
RsaNI	GTAC	2 cut(s)	244, 847
RseI	CAYNNNNRTG	1 cut(s)	815
SapI	GCTCTTC	1 cut(s)	870
SaqAI	TTAA	4 cut(s)	507, 660, 722, 791
SatI	GCNGC	3 cut(s)	192, 674, 805
Sau3AI	GATC	3 cut(s)	129, 445, 665
SchI	GAGTC	3 cut(s)	27, 859, 863
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	394
SfaNI	GCATC	3 cut(s)	344, 548, 934
SfcI	CTRYAG	1 cut(s)	531
SmiMI	CAYNNNNRTG	1 cut(s)	815
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
SpeI	ACTAGT	1 cut(s)	595
Sse9I	AATT	5 cut(s)	156, 215, 723, 774, 793
SspMI	CTAG	6 cut(s)	449, 548, 554, 596, 611, 881
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	2 cut(s)	386, 858
TaaI	ACNGT	3 cut(s)	353, 742, 841
TaqI	TCGA	1 cut(s)	605
TasI	AATT	5 cut(s)	156, 215, 723, 774, 793
TatI	WGTACW	1 cut(s)	846
TfiI	GAWTC	2 cut(s)	44, 691
Tru1I	TTAA	4 cut(s)	507, 660, 722, 791
Tru9I	TTAA	4 cut(s)	507, 660, 722, 791
TscAI	CASTG	7 cut(s)	211, 399, 408, 444, 712, 774, 846
TseFI	GTSAC	1 cut(s)	399
TseI	GCWGC	3 cut(s)	191, 673, 804
Tsp45I	GTSAC	1 cut(s)	399
TspDTI	ATGAA	2 cut(s)	17, 271
TspRI	CASTG	7 cut(s)	211, 399, 408, 444, 712, 774, 846
Vha464I	CTTAAG	1 cut(s)	506
XapI	RAATTY	1 cut(s)	215
XceI	RCATGY	1 cut(s)	16
XcmI	CCANNNNNNNNNTGG	1 cut(s)	420
XspI	CTAG	6 cut(s)	449, 548, 554, 596, 611, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.