Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005685.1

Orthogroup ID

OG0002107

Physical Location & Seq

Genomic Coordinates Reverse (-)

39136 .. 42872

Gene Structure 3737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005685.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atgatctccgtggaaaaccgaggcttcgacgccaaaatggtgaccggaggtggccggaatcgccggaaatcggcaataccggctaactgctacagtggctttcctcgctccaaaacgagcttctccggccaagtctccgtaaaatacctccacagacgtgacaagggaaagaaaccgagcttgggggtggccggattacgtcttgggtcggccggaggaggaagaatgctgattttcaatcttcagctcaccatctctgcttttgctatagtcgcatgcattctagctctagttgttcagacttatctagctgtagtgtggaacttggcacttgttgtttcggtactagaagaaaaatgtggcatggaggcactgggaaaagctggacagcttattaagggatcaaagctacgaggattttttctgaatgttgttatagccacctccttgtggttgttatttgttttgtacaggattgtcgctaaagctataccagtaaaagcagtgataattccattgctcctcttaaattgtatccgctgcctcatagctatggtttcgcgaatggcatacacagtcctgtactatgagtccaaggcgactcatggtgaagagcttgaacgtactgcaaggaagcttggacatgctaaggttacctctgatacccctcttatcaatgcagatgcaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

24.96

Weight (kDa)

10.13

Isoelectric Point (pI)

28.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18680 AT2G18690 AT2G18690
malus_domestica	MD16G1263500.v1.1
prunus_persica	Prupe.1G095700_v2.0.a1 Prupe.1G095800_v2.0.a1 Prupe.1G095900_v2.0.a1
pyrus_communis	pycom16g23240
rosa_chinensis	RchiOBHm_Chr4g0404701 RchiOBHm_Chr4g0404711 RchiOBHm_Chr4g0404721
rosa_laevigata	RLG00000008905 RLG00000008906 RLG00000008908 RLG00000008911 RLG00000008912 RLG00000008914
rosa_multiflora	Rmu_sc0001179.1_g000050 Rmu_sc0001179.1_g000051 Rmu_sc0004312.1_g000001 Rmu_sc0005685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017040 Rroxscaffold_5G00348900 Rroxscaffold_5G00348910
rosa_rugosa	Rorug04G0048900 Rorug04G0049000
rosa_samantha	Rh4AG124600 Rh4AG124700 Rh4BG118800 Rh4BG118900 Rh4BG119000 Rh4CG132800 Rh4CG132900 Rh4CG133000 Rh4DG117900 Rh4DG118000 Rh4DG118100 Rh5AG418500 Rh5BG434300 Rh5CG457500 Rh5DG447400
rosa_wichuraiana	Rw4G010090 Rw4G010100 Rw5G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	562
AciI	CCGC	1 cut(s)	538
AclWI	GGATC	1 cut(s)	409
AcoI	YGGCCR	4 cut(s)	52, 127, 189, 210
AcuI	CTGAAG	1 cut(s)	227
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	4 cut(s)	345, 470, 584, 625
AfiI	CCNNNNNNNGG	3 cut(s)	70, 182, 450
AgsI	TTSAA	2 cut(s)	238, 620
AjiI	CACGTC	1 cut(s)	158
AjuI	GAANNNNNNNTTGG	4 cut(s)	104, 136, 164, 196
AleI	CACNNNNGTG	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	139
AlwI	GGATC	1 cut(s)	409
AoxI	GGCC	4 cut(s)	52, 127, 189, 210
ApeKI	GCWGC	1 cut(s)	540
AsuHPI	GGTGA	3 cut(s)	52, 241, 620
BbvI	GCAGC	1 cut(s)	527
BccI	CCATC	1 cut(s)	260
BciVI	GTATCC	1 cut(s)	545
BcoDI	GTCTC	1 cut(s)	139
BfaI	CTAG	4 cut(s)	284, 290, 308, 347
BfmI	CTRYAG	3 cut(s)	91, 267, 312
BfuI	GTATCC	1 cut(s)	545
BisI	GCNGC	1 cut(s)	541
BlsI	GCNGC	1 cut(s)	542
BmgBI	CACGTC	1 cut(s)	158
BmrI	ACTGGG	1 cut(s)	383
BmsI	GCATC	1 cut(s)	673
BmuI	ACTGGG	1 cut(s)	383
Bpu10I	CCTNAGC	1 cut(s)	648
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	3 cut(s)	9, 19, 594
BsaWI	WCCGGW	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 182, 450
Bse118I	RCCGGY	1 cut(s)	79
Bse1I	ACTGG	2 cut(s)	378, 494
Bse3DI	GCAATG	1 cut(s)	515
BseDI	CCNNGG	3 cut(s)	9, 19, 594
BseLI	CCNNNNNNNGG	3 cut(s)	70, 182, 450
BseMI	GCAATG	1 cut(s)	515
BseNI	ACTGG	2 cut(s)	378, 494
BseRI	GAGGAG	2 cut(s)	231, 512
BseX3I	CGGCCG	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	527
Bsh1236I	CGCG	1 cut(s)	562
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	4 cut(s)	54, 129, 191, 212
BsiEI	CGRYCG	1 cut(s)	213
BsiSI	CCGG	7 cut(s)	45, 55, 64, 80, 126, 192, 213
BslI	CCNNNNNNNGG	3 cut(s)	70, 182, 450
BsmAI	GTCTC	1 cut(s)	139
BsmI	GAATGC	2 cut(s)	231, 279
BsnI	GGCC	4 cut(s)	54, 129, 191, 212
Bsp1407I	TGTACA	1 cut(s)	468
Bsp143I	GATC	2 cut(s)	3, 401
Bsp68I	TCGCGA	1 cut(s)	562
BspACI	CCGC	1 cut(s)	538
BspANI	GGCC	4 cut(s)	54, 129, 191, 212
BspFNI	CGCG	1 cut(s)	562
BspPI	GGATC	1 cut(s)	409
BspQI	GCTCTTC	1 cut(s)	606
BsrDI	GCAATG	1 cut(s)	515
BsrFI	RCCGGY	1 cut(s)	79
BsrGI	TGTACA	1 cut(s)	468
BsrI	ACTGG	2 cut(s)	378, 494
BssAI	RCCGGY	1 cut(s)	79
BssECI	CCNNGG	3 cut(s)	9, 19, 594
BssMI	GATC	2 cut(s)	3, 401
BssNI	GRCGYC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	594
Bst4CI	ACNGT	2 cut(s)	95, 577
Bst6I	CTCTTC	1 cut(s)	606
BstACI	GRCGYC	1 cut(s)	30
BstAUI	TGTACA	1 cut(s)	468
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	1 cut(s)	648
BstDSI	CCRYGG	1 cut(s)	9
BstEII	GGTNACC	2 cut(s)	40, 652
BstFNI	CGCG	1 cut(s)	562
BstKTI	GATC	2 cut(s)	6, 404
BstMAI	GTCTC	1 cut(s)	139
BstMBI	GATC	2 cut(s)	3, 401
BstMCI	CGRYCG	1 cut(s)	213
BstMWI	GCNNNNNNNGC	6 cut(s)	60, 80, 96, 105, 126, 272
BstNSI	RCATGY	2 cut(s)	279, 647
BstPI	GGTNACC	2 cut(s)	40, 652
BstSFI	CTRYAG	3 cut(s)	91, 267, 312
BstUI	CGCG	1 cut(s)	562
BstV1I	GCAGC	1 cut(s)	527
BstZI	CGGCCG	1 cut(s)	210
BsuI	GTATCC	1 cut(s)	545
BsuRI	GGCC	4 cut(s)	54, 129, 191, 212
BtgI	CCRYGG	1 cut(s)	9
BtrI	CACGTC	1 cut(s)	158
BtsI	GCAGTG	1 cut(s)	510
BtsIMutI	CAGTG	3 cut(s)	100, 371, 510
BtuMI	TCGCGA	1 cut(s)	562
Cac8I	GCNNGC	1 cut(s)	277
Cfr10I	RCCGGY	1 cut(s)	79
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	4 cut(s)	344, 469, 583, 624
CviAII	CATG	4 cut(s)	276, 364, 605, 644
CviQI	GTAC	4 cut(s)	344, 469, 583, 624
DdeI	CTNAG	1 cut(s)	648
DpnI	GATC	2 cut(s)	5, 403
DpnII	GATC	2 cut(s)	3, 401
EaeI	YGGCCR	4 cut(s)	52, 127, 189, 210
EagI	CGGCCG	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	606
EarI	CTCTTC	1 cut(s)	606
EclXI	CGGCCG	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	594
Eco52I	CGGCCG	1 cut(s)	210
Eco57I	CTGAAG	1 cut(s)	227
Eco91I	GGTNACC	2 cut(s)	40, 652
EcoO65I	GGTNACC	2 cut(s)	40, 652
EcoT14I	CCWWGG	1 cut(s)	594
EcoT22I	ATGCAT	1 cut(s)	281
ErhI	CCWWGG	1 cut(s)	594
FaeI	CATG	4 cut(s)	279, 367, 608, 647
FatI	CATG	4 cut(s)	275, 363, 604, 643
Fnu4HI	GCNGC	1 cut(s)	541
Fsp4HI	GCNGC	1 cut(s)	541
FspBI	CTAG	4 cut(s)	284, 290, 308, 347
GluI	GCNGC	1 cut(s)	541
HaeIII	GGCC	4 cut(s)	54, 129, 191, 212
HapII	CCGG	7 cut(s)	45, 55, 64, 80, 126, 192, 213
HgaI	GACGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	4 cut(s)	279, 367, 608, 647
HindIII	AAGCTT	1 cut(s)	635
HinfI	GANTC	3 cut(s)	58, 590, 601
HpaII	CCGG	7 cut(s)	45, 55, 64, 80, 126, 192, 213
HphI	GGTGA	3 cut(s)	52, 241, 620
Hpy188I	TCNGA	3 cut(s)	300, 426, 661
Hpy188III	TCNNGA	1 cut(s)	561
Hpy99I	CGWCG	1 cut(s)	32
HpyCH4III	ACNGT	2 cut(s)	95, 577
HpyCH4IV	ACGT	3 cut(s)	157, 199, 622
HpyCH4V	TGCA	4 cut(s)	279, 629, 680, 686
HpyF10VI	GCNNNNNNNGC	6 cut(s)	60, 80, 96, 105, 126, 272
HpyF3I	CTNAG	1 cut(s)	648
HpySE526I	ACGT	3 cut(s)	157, 199, 622
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	4 cut(s)	279, 367, 608, 647
Kzo9I	GATC	2 cut(s)	3, 401
LguI	GCTCTTC	1 cut(s)	606
LmnI	GCTCC	2 cut(s)	113, 525
Lsp1109I	GCAGC	1 cut(s)	527
LweI	GCATC	1 cut(s)	673
MaeI	CTAG	4 cut(s)	284, 290, 308, 347
MaeII	ACGT	3 cut(s)	157, 199, 622
MaeIII	GTNAC	3 cut(s)	40, 158, 652
MalI	GATC	2 cut(s)	5, 403
MboI	GATC	2 cut(s)	3, 401
MboII	GAAGA	4 cut(s)	233, 234, 362, 623
MluCI	AATT	3 cut(s)	510, 529, 687
MlyI	GAGTC	2 cut(s)	595, 599
Mph1103I	ATGCAT	1 cut(s)	281
MseI	TTAA	2 cut(s)	396, 527
MslI	CAYNNNNRTG	2 cut(s)	156, 551
MspA1I	CMGCKG	1 cut(s)	540
MspI	CCGG	7 cut(s)	45, 55, 64, 80, 126, 192, 213
Mva1269I	GAATGC	2 cut(s)	231, 279
MvnI	CGCG	1 cut(s)	562
MwoI	GCNNNNNNNGC	6 cut(s)	60, 80, 96, 105, 126, 272
NdeII	GATC	2 cut(s)	3, 401
NlaIII	CATG	4 cut(s)	279, 367, 608, 647
NmuCI	GTSAC	2 cut(s)	40, 158
NruI	TCGCGA	1 cut(s)	562
NsiI	ATGCAT	1 cut(s)	281
NspI	RCATGY	2 cut(s)	279, 647
OliI	CACNNNNGTG	1 cut(s)	156
PaeI	GCATGC	1 cut(s)	279
PciSI	GCTCTTC	1 cut(s)	606
PctI	GAATGC	2 cut(s)	231, 279
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	542
PleI	GAGTC	2 cut(s)	595, 598
PpsI	GAGTC	2 cut(s)	595, 598
PspEI	GGTNACC	2 cut(s)	40, 652
RruI	TCGCGA	1 cut(s)	562
RsaI	GTAC	4 cut(s)	345, 470, 584, 625
RsaNI	GTAC	4 cut(s)	344, 469, 583, 624
RseI	CAYNNNNRTG	2 cut(s)	156, 551
SapI	GCTCTTC	1 cut(s)	606
SaqAI	TTAA	2 cut(s)	396, 527
SatI	GCNGC	1 cut(s)	541
Sau3AI	GATC	2 cut(s)	3, 401
SchI	GAGTC	2 cut(s)	595, 599
SfaNI	GCATC	1 cut(s)	673
SfcI	CTRYAG	3 cut(s)	91, 267, 312
SmiMI	CAYNNNNRTG	2 cut(s)	156, 551
SphI	GCATGC	1 cut(s)	279
Sse9I	AATT	3 cut(s)	510, 529, 687
SsiI	CCGC	1 cut(s)	538
SspMI	CTAG	4 cut(s)	284, 290, 308, 347
StyI	CCWWGG	1 cut(s)	594
TaaI	ACNGT	2 cut(s)	95, 577
TaiI	ACGT	3 cut(s)	160, 202, 625
TaqI	TCGA	1 cut(s)	27
TasI	AATT	3 cut(s)	510, 529, 687
TatI	WGTACW	2 cut(s)	468, 582
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	2 cut(s)	396, 527
Tru9I	TTAA	2 cut(s)	396, 527
TscAI	CASTG	3 cut(s)	100, 378, 510
TseFI	GTSAC	2 cut(s)	40, 158
TseI	GCWGC	1 cut(s)	540
Tsp45I	GTSAC	2 cut(s)	40, 158
TspGWI	ACGGA	1 cut(s)	127
TspRI	CASTG	3 cut(s)	100, 378, 510
XceI	RCATGY	2 cut(s)	279, 647
XspI	CTAG	4 cut(s)	284, 290, 308, 347
Zsp2I	ATGCAT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.