Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002107

Physical Location & Seq

Genomic Coordinates Reverse (-)

7568107 .. 7569057

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G095700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGGGTTTCATATGCTTCTGGATTTTCTGAGAATGGTAAGGGACGTCTCGAAACTTTTTCCCAAAAATTTGAAGCTCATGTCTTCCATCACGCTGCTTATAATTTTTCTTGATTCTATCCTCATGGTTTTTTTAAAAATCTGCATCAAAGTACTTTCCACCAAAGCAAAGAGTCTACAAGTTAATAATACCACCACTAGCGCCGAATTGACCAACATTCTGTTTACTATGACAGATTACCTCCGGTTATATGCTGGACTAGCGTTTATTTTCATTTGTGCGTTCTCTTTTATCTCGTTATTCTTCATAACAGCTTCAATCATAGGATCAGCAGTAACATACTGCAGAAAAGACTTATCTACCAAGGAACTTCTATTACGGGCAGTGAAATCGATGAAGAGAACGGTTGTCAGTTGGTTATACATAAGGCTGCTTGATCTAGGCTATGGTCTTCTAGTAGCACTTCTGCTTCTTTTACTAGTGCTGATTTTCAATATTACATTCACTATCCTGGCTTTCTCTATGATCTTATTGGTTGTAGCTCTATTTTTCCGAACTTATCTAGATGTTGTCTGGAATTTAGCCCTCGTTGTTTCGGTACTGGAAGATATATGTGGCATTGAGGCTCTTGGAAAAGCTGCACGCCTTGTCAAGGGATCAAAGCTACGTGGATTTTTTCTGAATCTTTTTGTAGCATTCTCCATGTCTATGTTCAATGGTTTGGTGACGATTGGGACTGTAGCCTTTCCAGAGAATGCAAGAATGATTCCATCTCTCTTCTCATATTCTATAACCTGCCTGATCACAATGTTTTTATACATGTCATACACAGTCCTCTACTATGAGTGCAAGAAGACTCATGGAGAAGAGGTTGAAAGGAAACTAAGCACGGAATATACTAAAGTGGCCTTTACTGAGTCCACTCCACTTCTCAGTGCAGATGCACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

317

Amino Acids

35.66

Weight (kDa)

9.3

Isoelectric Point (pI)

29.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18680 AT2G18690 AT2G18690
malus_domestica	MD16G1263500.v1.1
prunus_persica	Prupe.1G095700_v2.0.a1 Prupe.1G095800_v2.0.a1 Prupe.1G095900_v2.0.a1
pyrus_communis	pycom16g23240
rosa_chinensis	RchiOBHm_Chr4g0404701 RchiOBHm_Chr4g0404711 RchiOBHm_Chr4g0404721
rosa_laevigata	RLG00000008905 RLG00000008906 RLG00000008908 RLG00000008911 RLG00000008912 RLG00000008914
rosa_multiflora	Rmu_sc0001179.1_g000050 Rmu_sc0001179.1_g000051 Rmu_sc0004312.1_g000001 Rmu_sc0005685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017040 Rroxscaffold_5G00348900 Rroxscaffold_5G00348910
rosa_rugosa	Rorug04G0048900 Rorug04G0049000
rosa_samantha	Rh4AG124600 Rh4AG124700 Rh4BG118800 Rh4BG118900 Rh4BG119000 Rh4CG132800 Rh4CG132900 Rh4CG133000 Rh4DG117900 Rh4DG118000 Rh4DG118100 Rh5AG418500 Rh5BG434300 Rh5CG457500 Rh5DG447400
rosa_wichuraiana	Rw4G010090 Rw4G010100 Rw5G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	101
AatII	GACGTC	1 cut(s)	48
Acc36I	ACCTGC	1 cut(s)	803
AccI	GTMKAC	1 cut(s)	175
AclWI	GGATC	2 cut(s)	334, 664
AcsI	RAATTY	2 cut(s)	67, 577
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	2 cut(s)	153, 600
AfiI	CCNNNNNNNGG	1 cut(s)	652
AflIII	ACRYGT	1 cut(s)	819
AgsI	TTSAA	5 cut(s)	73, 318, 493, 715, 875
AhlI	ACTAGT	1 cut(s)	478
AjnI	CCWGG	1 cut(s)	510
AluBI	AGCT	5 cut(s)	76, 314, 542, 638, 664
AluI	AGCT	5 cut(s)	76, 314, 542, 638, 664
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	2 cut(s)	334, 664
AoxI	GGCC	1 cut(s)	906
ApeKI	GCWGC	3 cut(s)	94, 430, 638
ApoI	RAATTY	2 cut(s)	67, 577
AspLEI	GCGC	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	736
BbsI	GAAGAC	3 cut(s)	75, 443, 860
BbvI	GCAGC	3 cut(s)	81, 417, 625
BccI	CCATC	2 cut(s)	95, 778
BcgI	CGANNNNNNTGC	2 cut(s)	372, 406
BciT130I	CCWGG	1 cut(s)	512
BclI	TGATCA	1 cut(s)	801
BcoDI	GTCTC	1 cut(s)	52
BcuI	ACTAGT	1 cut(s)	478
BfaI	CTAG	6 cut(s)	198, 260, 440, 455, 479, 563
BfmI	CTRYAG	2 cut(s)	343, 738
BfoI	RGCGCY	1 cut(s)	204
BfuAI	ACCTGC	1 cut(s)	803
BisI	GCNGC	3 cut(s)	95, 431, 639
BlsI	GCNGC	3 cut(s)	96, 432, 640
BmcAI	AGTACT	1 cut(s)	153
Bme1390I	CCNGG	1 cut(s)	512
BmrFI	CCNGG	1 cut(s)	512
BmsI	GCATC	2 cut(s)	153, 931
BpiI	GAAGAC	3 cut(s)	75, 443, 860
Bsa29I	ATCGAT	1 cut(s)	392
BsaAI	YACGTR	1 cut(s)	668
BsaHI	GRCGYC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	363
BsaWI	WCCGGW	1 cut(s)	243
BsaXI	ACNNNNNCTCC	2 cut(s)	855, 885
Bsc4I	CCNNNNNNNGG	1 cut(s)	652
Bse1I	ACTGG	1 cut(s)	606
BseBI	CCWGG	1 cut(s)	512
BseCI	ATCGAT	1 cut(s)	392
BseDI	CCNNGG	1 cut(s)	363
BseLI	CCNNNNNNNGG	1 cut(s)	652
BseMII	CTCAG	3 cut(s)	20, 906, 946
BseNI	ACTGG	1 cut(s)	606
BseXI	GCAGC	3 cut(s)	81, 417, 625
BsgI	GTGCAG	1 cut(s)	624
BshFI	GGCC	1 cut(s)	908
BshVI	ATCGAT	1 cut(s)	392
BsiSI	CCGG	1 cut(s)	244
BslFI	GGGAC	2 cut(s)	56, 748
BslI	CCNNNNNNNGG	1 cut(s)	652
BsmAI	GTCTC	1 cut(s)	52
BsmBI	CGTCTC	1 cut(s)	52
BsmFI	GGGAC	2 cut(s)	56, 748
BsmI	GAATGC	2 cut(s)	695, 760
BsnI	GGCC	1 cut(s)	908
Bsp143I	GATC	5 cut(s)	326, 436, 525, 656, 801
BspANI	GGCC	1 cut(s)	908
BspCNI	CTCAG	3 cut(s)	21, 907, 945
BspDI	ATCGAT	1 cut(s)	392
BspMAI	CTGCAG	1 cut(s)	347
BspMI	ACCTGC	1 cut(s)	803
BspPI	GGATC	2 cut(s)	334, 664
BsrI	ACTGG	1 cut(s)	606
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	5 cut(s)	326, 436, 525, 656, 801
BssNI	GRCGYC	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	3 cut(s)	406, 739, 832
Bst6I	CTCTTC	3 cut(s)	392, 782, 861
BstACI	GRCGYC	1 cut(s)	45
BstBAI	YACGTR	1 cut(s)	668
BstC8I	GCNNGC	1 cut(s)	643
BstDEI	CTNAG	4 cut(s)	29, 884, 915, 932
BstENI	CCTNNNNNAGG	1 cut(s)	650
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	5 cut(s)	329, 439, 528, 659, 804
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	5 cut(s)	326, 436, 525, 656, 801
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	1 cut(s)	512
BstNSI	RCATGY	1 cut(s)	823
BstSCI	CCNGG	1 cut(s)	510
BstSFI	CTRYAG	2 cut(s)	343, 738
BstV1I	GCAGC	3 cut(s)	81, 417, 625
BstV2I	GAAGAC	3 cut(s)	75, 443, 860
Bsu15I	ATCGAT	1 cut(s)	392
BsuRI	GGCC	1 cut(s)	908
BsuTUI	ATCGAT	1 cut(s)	392
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	2 cut(s)	390, 940
BveI	ACCTGC	1 cut(s)	803
Cac8I	GCNNGC	1 cut(s)	643
CfoI	GCGC	1 cut(s)	203
ClaI	ATCGAT	1 cut(s)	392
Csp6I	GTAC	2 cut(s)	152, 599
CviAII	CATG	6 cut(s)	79, 124, 703, 820, 860, 948
CviQI	GTAC	2 cut(s)	152, 599
DdeI	CTNAG	4 cut(s)	29, 884, 915, 932
DpnI	GATC	5 cut(s)	328, 438, 527, 658, 803
DpnII	GATC	5 cut(s)	326, 436, 525, 656, 801
DraI	TTTAAA	1 cut(s)	135
Eam1104I	CTCTTC	3 cut(s)	392, 782, 861
EarI	CTCTTC	3 cut(s)	392, 782, 861
Eco130I	CCWWGG	1 cut(s)	363
EcoNI	CCTNNNNNAGG	1 cut(s)	650
EcoRII	CCWGG	1 cut(s)	510
EcoT14I	CCWWGG	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	363
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	6 cut(s)	82, 127, 706, 823, 863, 951
FaqI	GGGAC	2 cut(s)	56, 748
FatI	CATG	6 cut(s)	78, 123, 702, 819, 859, 947
FauNDI	CATATG	1 cut(s)	12
FbaI	TGATCA	1 cut(s)	801
FblI	GTMKAC	1 cut(s)	175
Fnu4HI	GCNGC	3 cut(s)	95, 431, 639
Fsp4HI	GCNGC	3 cut(s)	95, 431, 639
FspBI	CTAG	6 cut(s)	198, 260, 440, 455, 479, 563
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	3 cut(s)	95, 431, 639
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	908
HapII	CCGG	1 cut(s)	244
HhaI	GCGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	6 cut(s)	82, 127, 706, 823, 863, 951
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HinfI	GANTC	6 cut(s)	113, 172, 682, 766, 856, 917
HpaII	CCGG	1 cut(s)	244
HphI	GGTGA	1 cut(s)	736
Hpy166II	GTNNAC	3 cut(s)	176, 225, 921
Hpy188I	TCNGA	3 cut(s)	30, 554, 681
Hpy188III	TCNNGA	6 cut(s)	20, 49, 110, 563, 574, 749
Hpy8I	GTNNAC	3 cut(s)	176, 225, 921
HpyCH4III	ACNGT	3 cut(s)	406, 739, 832
HpyCH4IV	ACGT	2 cut(s)	45, 667
HpyCH4V	TGCA	7 cut(s)	144, 345, 641, 758, 849, 938, 944
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	4 cut(s)	29, 884, 915, 932
HpySE526I	ACGT	2 cut(s)	45, 667
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	6 cut(s)	82, 127, 706, 823, 863, 951
HspAI	GCGC	1 cut(s)	201
Ksp22I	TGATCA	1 cut(s)	801
Kzo9I	GATC	5 cut(s)	326, 436, 525, 656, 801
Lsp1109I	GCAGC	3 cut(s)	81, 417, 625
LweI	GCATC	2 cut(s)	153, 931
MaeI	CTAG	6 cut(s)	198, 260, 440, 455, 479, 563
MaeII	ACGT	2 cut(s)	45, 667
MaeIII	GTNAC	2 cut(s)	334, 724
MalI	GATC	5 cut(s)	328, 438, 527, 658, 803
MboI	GATC	5 cut(s)	326, 436, 525, 656, 801
MboII	GAAGA	8 cut(s)	75, 295, 409, 443, 617, 769, 865, 878
MluCI	AATT	4 cut(s)	67, 102, 206, 577
MlyI	GAGTC	3 cut(s)	181, 850, 926
MnlI	CCTC	6 cut(s)	131, 251, 596, 616, 845, 862
MseI	TTAA	2 cut(s)	134, 183
MslI	CAYNNNNRTG	1 cut(s)	707
MspI	CCGG	1 cut(s)	244
MspR9I	CCNGG	1 cut(s)	512
Mva1269I	GAATGC	2 cut(s)	695, 760
MvaI	CCWGG	1 cut(s)	512
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeI	CATATG	1 cut(s)	12
NdeII	GATC	5 cut(s)	326, 436, 525, 656, 801
NlaIII	CATG	6 cut(s)	82, 127, 706, 823, 863, 951
NmuCI	GTSAC	1 cut(s)	724
NspI	RCATGY	1 cut(s)	823
PciI	ACATGT	1 cut(s)	819
PctI	GAATGC	2 cut(s)	695, 760
PfeI	GAWTC	3 cut(s)	113, 682, 766
PkrI	GCNGC	3 cut(s)	96, 432, 640
PleI	GAGTC	3 cut(s)	180, 850, 925
PpsI	GAGTC	3 cut(s)	180, 850, 925
Ppu21I	YACGTR	1 cut(s)	668
PscI	ACATGT	1 cut(s)	819
PsiI	TTATAA	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	510
PsrI	GAACNNNNNNTAC	2 cut(s)	360, 392
PstI	CTGCAG	1 cut(s)	347
RsaI	GTAC	2 cut(s)	153, 600
RsaNI	GTAC	2 cut(s)	152, 599
RseI	CAYNNNNRTG	1 cut(s)	707
SaqAI	TTAA	2 cut(s)	134, 183
SatI	GCNGC	3 cut(s)	95, 431, 639
Sau3AI	GATC	5 cut(s)	326, 436, 525, 656, 801
ScaI	AGTACT	1 cut(s)	153
SchI	GAGTC	3 cut(s)	181, 850, 926
ScrFI	CCNGG	1 cut(s)	512
SfaNI	GCATC	2 cut(s)	153, 931
SfcI	CTRYAG	2 cut(s)	343, 738
SmiMI	CAYNNNNRTG	1 cut(s)	707
SpeI	ACTAGT	1 cut(s)	478
Sse9I	AATT	4 cut(s)	67, 102, 206, 577
SspI	AATATT	1 cut(s)	496
SspMI	CTAG	6 cut(s)	198, 260, 440, 455, 479, 563
StyD4I	CCNGG	1 cut(s)	510
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	3 cut(s)	406, 739, 832
TaiI	ACGT	2 cut(s)	48, 670
TaqI	TCGA	2 cut(s)	50, 392
TasI	AATT	4 cut(s)	67, 102, 206, 577
TatI	WGTACW	1 cut(s)	151
TfiI	GAWTC	3 cut(s)	113, 682, 766
Tru1I	TTAA	2 cut(s)	134, 183
Tru9I	TTAA	2 cut(s)	134, 183
TscAI	CASTG	2 cut(s)	390, 940
TseFI	GTSAC	1 cut(s)	724
TseI	GCWGC	3 cut(s)	94, 430, 638
Tsp45I	GTSAC	1 cut(s)	724
TspDTI	ATGAA	3 cut(s)	262, 295, 410
TspGWI	ACGGA	1 cut(s)	905
TspRI	CASTG	2 cut(s)	390, 940
XagI	CCTNNNNNAGG	1 cut(s)	650
XapI	RAATTY	2 cut(s)	67, 577
XbaI	TCTAGA	1 cut(s)	562
XceI	RCATGY	1 cut(s)	823
XmiI	GTMKAC	1 cut(s)	175
XspI	CTAG	6 cut(s)	198, 260, 440, 455, 479, 563
ZraI	GACGTC	1 cut(s)	46
ZrmI	AGTACT	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.