Rmu_sc0001179.1_g000050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001179.1
OG0002107
Physical Location & Seq
Forward (+)
253562 .. 254077
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001179.1_g000050.1.cds

Sequence Viewer

Length: 516 bp
atgggaaatctaggctacttatcatttctctttgcatttgtttttcctttagtgctgattttcaatcttaagctcaccatatctgctttcactatagtcgcatccattctagctctagttgtcagaacttatctcgctgttgtgtggaacttagcactagttgtttcgatactagaagaaaaatgtggcattgaggcacttgggaaagctggacagcttattaagggatcaaagctacgagggttttttctgaatcttgttatagccactgcctcgttggtgttatttgttttgtttaggactgctgctaaagctatgccagtaaaagcactgataattccattgctcctgttaaattgtatcagctgcctcattactatggtcttgctaatggcatacacagtcctgtactatgagtccaaggccactcatggagaagagcttgaactgcaaggaagcttggaatatgctaaggtttcctctgctacccctcttatcaatgcagatgcagtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

18.53

Weight (kDa)

8.79

Isoelectric Point (pI)

26.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 235
AfaI GTAC 1 cut(s) 410
AflII CTTAAG 1 cut(s) 68
AgsI TTSAA 2 cut(s) 64, 446
AhlI ACTAGT 1 cut(s) 157
AluBI AGCT 9 cut(s) 73, 113, 209, 217, 235, 314, 366, 442, 459
AluI AGCT 9 cut(s) 73, 113, 209, 217, 235, 314, 366, 442, 459
AlwI GGATC 1 cut(s) 235
AoxI GGCC 1 cut(s) 423
ApeKI GCWGC 2 cut(s) 305, 366
AsuHPI GGTGA 1 cut(s) 67
BbvI GCAGC 2 cut(s) 292, 353
BcuI ACTAGT 1 cut(s) 157
BfaI CTAG 5 cut(s) 11, 110, 116, 158, 173
BfmI CTRYAG 1 cut(s) 93
BfrI CTTAAG 1 cut(s) 68
BisI GCNGC 2 cut(s) 306, 367
BlsI GCNGC 2 cut(s) 307, 368
BmsI GCATC 2 cut(s) 110, 496
Bpu10I CCTNAGC 1 cut(s) 471
BsaJI CCNNGG 1 cut(s) 420
Bse1I ACTGG 1 cut(s) 320
Bse3DI GCAATG 1 cut(s) 341
BseDI CCNNGG 1 cut(s) 420
BseGI GGATG 1 cut(s) 101
BseMI GCAATG 1 cut(s) 341
BseNI ACTGG 1 cut(s) 320
BseXI GCAGC 2 cut(s) 292, 353
BshFI GGCC 1 cut(s) 425
BsnI GGCC 1 cut(s) 425
Bsp143I GATC 1 cut(s) 227
BspANI GGCC 1 cut(s) 425
BspPI GGATC 1 cut(s) 235
BspQI GCTCTTC 1 cut(s) 432
BspTI CTTAAG 1 cut(s) 68
BsrDI GCAATG 1 cut(s) 341
BsrI ACTGG 1 cut(s) 320
BssECI CCNNGG 1 cut(s) 420
BssMI GATC 1 cut(s) 227
BssT1I CCWWGG 1 cut(s) 420
Bst4CI ACNGT 1 cut(s) 403
Bst6I CTCTTC 1 cut(s) 432
BstAFI CTTAAG 1 cut(s) 68
BstDEI CTNAG 2 cut(s) 151, 471
BstF5I GGATG 1 cut(s) 101
BstKTI GATC 1 cut(s) 230
BstMBI GATC 1 cut(s) 227
BstMWI GCNNNNNNNGC 2 cut(s) 311, 448
BstSFI CTRYAG 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 292, 353
BsuRI GGCC 1 cut(s) 425
BtsCI GGATG 1 cut(s) 101
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 2 cut(s) 267, 329
Csp6I GTAC 1 cut(s) 409
CviAII CATG 1 cut(s) 431
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 2 cut(s) 151, 471
DpnI GATC 1 cut(s) 229
DpnII GATC 1 cut(s) 227
Eam1104I CTCTTC 1 cut(s) 432
EarI CTCTTC 1 cut(s) 432
Eco130I CCWWGG 1 cut(s) 420
EcoT14I CCWWGG 1 cut(s) 420
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 1 cut(s) 434
FaiI YATR 9 cut(s) 80, 95, 263, 317, 380, 397, 414, 432, 468
FatI CATG 1 cut(s) 430
Fnu4HI GCNGC 2 cut(s) 306, 367
FokI GGATG 1 cut(s) 88
Fsp4HI GCNGC 2 cut(s) 306, 367
FspBI CTAG 5 cut(s) 11, 110, 116, 158, 173
GluI GCNGC 2 cut(s) 306, 367
HaeIII GGCC 1 cut(s) 425
Hin1II CATG 1 cut(s) 434
HindIII AAGCTT 1 cut(s) 457
HinfI GANTC 2 cut(s) 253, 416
HphI GGTGA 1 cut(s) 67
Hpy188I TCNGA 2 cut(s) 125, 252
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4V TGCA 4 cut(s) 35, 451, 503, 509
HpyF10VI GCNNNNNNNGC 2 cut(s) 311, 448
HpyF3I CTNAG 2 cut(s) 151, 471
Hsp92II CATG 1 cut(s) 434
Kzo9I GATC 1 cut(s) 227
LguI GCTCTTC 1 cut(s) 432
LmnI GCTCC 1 cut(s) 351
LpnPI CCDG 4 cut(s) 195, 333, 362, 419
Lsp1109I GCAGC 2 cut(s) 292, 353
LweI GCATC 2 cut(s) 110, 496
MaeI CTAG 5 cut(s) 11, 110, 116, 158, 173
MalI GATC 1 cut(s) 229
MboI GATC 1 cut(s) 227
MboII GAAGA 2 cut(s) 188, 449
MluCI AATT 2 cut(s) 336, 355
MlyI GAGTC 1 cut(s) 425
MnlI CCTC 6 cut(s) 187, 233, 283, 380, 490, 501
MseI TTAA 3 cut(s) 69, 222, 353
MslI CAYNNNNRTG 1 cut(s) 377
MspA1I CMGCKG 1 cut(s) 366
MspCI CTTAAG 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 311, 448
NdeII GATC 1 cut(s) 227
NlaIII CATG 1 cut(s) 434
PciSI GCTCTTC 1 cut(s) 432
PfeI GAWTC 1 cut(s) 253
PkrI GCNGC 2 cut(s) 307, 368
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
PvuII CAGCTG 1 cut(s) 366
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
RseI CAYNNNNRTG 1 cut(s) 377
SapI GCTCTTC 1 cut(s) 432
SaqAI TTAA 3 cut(s) 69, 222, 353
SatI GCNGC 2 cut(s) 306, 367
Sau3AI GATC 1 cut(s) 227
SchI GAGTC 1 cut(s) 425
SfaNI GCATC 2 cut(s) 110, 496
SfcI CTRYAG 1 cut(s) 93
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
SpeI ACTAGT 1 cut(s) 157
Sse9I AATT 2 cut(s) 336, 355
SspMI CTAG 5 cut(s) 11, 110, 116, 158, 173
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 1 cut(s) 403
TaqI TCGA 1 cut(s) 167
TasI AATT 2 cut(s) 336, 355
TatI WGTACW 1 cut(s) 408
TfiI GAWTC 1 cut(s) 253
Tru1I TTAA 3 cut(s) 69, 222, 353
Tru9I TTAA 3 cut(s) 69, 222, 353
TscAI CASTG 2 cut(s) 274, 336
TseI GCWGC 2 cut(s) 305, 366
TspRI CASTG 2 cut(s) 274, 336
Vha464I CTTAAG 1 cut(s) 68
XcmI CCANNNNNNNNNTGG 1 cut(s) 274
XspI CTAG 5 cut(s) 11, 110, 116, 158, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.