RchiOBHm_Chr4g0404701

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002107
Physical Location & Seq
Reverse (-)
24583123 .. 24583593
471 bp
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UTR
Exon/CDS
Intron
PRQ37623

Sequence Viewer

Length: 471 bp
ATGCTGCTTCATCTAGGCTACTGTCTGCTTCTTATAGCATTTCTGGTTCCTTATGTTCAGTTTTTAAAACCCAAGTTCATACTGTCTGATTGCACTATACTCGTACTAATTGAAGCTGCACTTTTCCAAACTTATCTTGCTGTTGTTTGGAACTTAGCACTCATTGTTCTGAAAATCGAGGAAAAATGGGACATGGAGGAGCTAGGGAAAGCCGAACAGCTAATCAAAAGATCTAAGCTACGTGTGTTTTTCCTGAATATTCTTTTCAGAGCGTTCTCTGTTGCTGTGGTCTATGATTTGAACAAGATTGGCCTTAAAGCATTTTCAGGAAGTGAAATAATAATGCCATTGCTTGCTTTAAACTCCATGTCCTTGATGAGGATGTTGTCGCTAATGGTGTATTCAAATCAATACTATGAGTGCAAGGAGACTCATGGAGAAGAGCTTGAACTGCAAGGAAGTATGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

18.0

Weight (kDa)

6.29

Isoelectric Point (pI)

51.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 378
AflIII ACRYGT 1 cut(s) 241
AgsI TTSAA 4 cut(s) 113, 301, 405, 449
AluBI AGCT 5 cut(s) 116, 202, 220, 238, 445
AluI AGCT 5 cut(s) 116, 202, 220, 238, 445
Alw26I GTCTC 1 cut(s) 422
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 2 cut(s) 4, 116
BbvI GCAGC 1 cut(s) 103
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 2 cut(s) 14, 203
BglII AGATCT 1 cut(s) 230
BisI GCNGC 2 cut(s) 5, 117
BlsI GCNGC 2 cut(s) 6, 118
BmiI GGNNCC 1 cut(s) 48
BsaAI YACGTR 1 cut(s) 242
Bsc4I CCNNNNNNNGG 1 cut(s) 378
Bse3DI GCAATG 1 cut(s) 347
BseGI GGATG 1 cut(s) 387
BseLI CCNNNNNNNGG 1 cut(s) 378
BseMI GCAATG 1 cut(s) 347
BseRI GAGGAG 1 cut(s) 212
BseXI GCAGC 1 cut(s) 103
BsgI GTGCAG 1 cut(s) 102
BshFI GGCC 1 cut(s) 312
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 378
BsmAI GTCTC 1 cut(s) 422
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 1 cut(s) 312
Bsp143I GATC 1 cut(s) 230
BspANI GGCC 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 48
BspQI GCTCTTC 1 cut(s) 435
BsrDI GCAATG 1 cut(s) 347
BssMI GATC 1 cut(s) 230
Bst4CI ACNGT 2 cut(s) 23, 84
Bst6I CTCTTC 1 cut(s) 435
BstBAI YACGTR 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 2 cut(s) 154, 234
BstENI CCTNNNNNAGG 1 cut(s) 376
BstF5I GGATG 1 cut(s) 387
BstKTI GATC 1 cut(s) 233
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 1 cut(s) 230
BstMWI GCNNNNNNNGC 1 cut(s) 451
BstV1I GCAGC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 230
BstYI RGATCY 1 cut(s) 230
BsuRI GGCC 1 cut(s) 312
BtsCI GGATG 1 cut(s) 387
Cac8I GCNNGC 1 cut(s) 354
Csp6I GTAC 1 cut(s) 104
CviAII CATG 3 cut(s) 193, 367, 434
CviJI RGCY 8 cut(s) 18, 116, 202, 212, 220, 238, 312, 445
CviKI_1 RGCY 8 cut(s) 18, 116, 202, 212, 220, 238, 312, 445
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 2 cut(s) 154, 234
DpnI GATC 1 cut(s) 232
DpnII GATC 1 cut(s) 230
DraI TTTAAA 2 cut(s) 66, 360
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
EcoNI CCTNNNNNAGG 1 cut(s) 376
EcoT22I ATGCAT 1 cut(s) 468
FaeI CATG 3 cut(s) 196, 370, 437
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FaqI GGGAC 1 cut(s) 203
FatI CATG 3 cut(s) 192, 366, 433
Fnu4HI GCNGC 2 cut(s) 5, 117
FokI GGATG 1 cut(s) 394
Fsp4HI GCNGC 2 cut(s) 5, 117
FspBI CTAG 2 cut(s) 14, 203
GluI GCNGC 2 cut(s) 5, 117
HaeIII GGCC 1 cut(s) 312
Hin1II CATG 3 cut(s) 196, 370, 437
HinfI GANTC 1 cut(s) 430
Hpy188I TCNGA 3 cut(s) 88, 171, 269
Hpy188III TCNNGA 2 cut(s) 253, 327
HpyCH4III ACNGT 2 cut(s) 23, 84
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 5 cut(s) 93, 119, 423, 454, 466
HpyF10VI GCNNNNNNNGC 1 cut(s) 451
HpyF3I CTNAG 2 cut(s) 154, 234
HpySE526I ACGT 1 cut(s) 241
Hsp92II CATG 3 cut(s) 196, 370, 437
Kzo9I GATC 1 cut(s) 230
LguI GCTCTTC 1 cut(s) 435
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 3 cut(s) 29, 266, 312
Lsp1109I GCAGC 1 cut(s) 103
MaeI CTAG 2 cut(s) 14, 203
MaeII ACGT 1 cut(s) 241
MalI GATC 1 cut(s) 232
MboI GATC 1 cut(s) 230
MboII GAAGA 1 cut(s) 452
MflI RGATCY 1 cut(s) 230
MluCI AATT 1 cut(s) 108
MlyI GAGTC 1 cut(s) 424
MnlI CCTC 3 cut(s) 172, 190, 372
Mph1103I ATGCAT 1 cut(s) 468
MseI TTAA 3 cut(s) 65, 315, 359
MwoI GCNNNNNNNGC 1 cut(s) 451
NdeII GATC 1 cut(s) 230
NlaIII CATG 3 cut(s) 196, 370, 437
NlaIV GGNNCC 1 cut(s) 48
NsiI ATGCAT 1 cut(s) 468
PciSI GCTCTTC 1 cut(s) 435
PkrI GCNGC 2 cut(s) 6, 118
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
Ppu21I YACGTR 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 48
PsuI RGATCY 1 cut(s) 230
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
SapI GCTCTTC 1 cut(s) 435
SaqAI TTAA 3 cut(s) 65, 315, 359
SatI GCNGC 2 cut(s) 5, 117
Sau3AI GATC 1 cut(s) 230
SchI GAGTC 1 cut(s) 424
SetI ASST 6 cut(s) 118, 204, 222, 240, 244, 447
Sse9I AATT 1 cut(s) 108
SspI AATATT 1 cut(s) 259
SspMI CTAG 2 cut(s) 14, 203
TaaI ACNGT 2 cut(s) 23, 84
TaiI ACGT 1 cut(s) 244
TaqI TCGA 1 cut(s) 177
TasI AATT 1 cut(s) 108
Tru1I TTAA 3 cut(s) 65, 315, 359
Tru9I TTAA 3 cut(s) 65, 315, 359
TseI GCWGC 2 cut(s) 4, 116
TspDTI ATGAA 1 cut(s) 67
XagI CCTNNNNNAGG 1 cut(s) 376
XspI CTAG 2 cut(s) 14, 203
Zsp2I ATGCAT 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.